Slot: scaf_logsum

The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase

URI: nmdc:scaf_logsum

Inheritance

• metagenome_assembly_parameter
  • scaf_logsum

Applicable Classes

Name	Description	Modifies Slot
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no
MetatranscriptomeAssembly		no

Properties

• Range: Float

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:scaf_logsum
native	nmdc:scaf_logsum

LinkML Source

name: scaf_logsum
description: The sum of the (length*log(length)) of all scaffolds, times some constant.  Increase
  the contiguity, the score will increase
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: metagenome_assembly_parameter
alias: scaf_logsum
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float