Slot: scaf_n90
Given a set of scaffolds, each with its own length, the N90 count is defined as the smallest number of scaffolds whose length sum makes up 90% of genome size.
URI: nmdc:scaf_n90
Inheritance
- metagenome_assembly_parameter
- scaf_n90
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MetagenomeAssembly | A workflow execution activity that converts sequencing reads into an assemble... | no |
| MetatranscriptomeAssembly | no |
Properties
- Range: Float
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc:scaf_n90 |
| native | nmdc:scaf_n90 |
LinkML Source
name: scaf_n90
description: Given a set of scaffolds, each with its own length, the N90 count is
defined as the smallest number of scaffolds whose length sum makes up 90% of genome
size.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: metagenome_assembly_parameter
alias: scaf_n90
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float