Slot: source material identifiers (source_mat_id)

A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2).

URI: MIXS:0000026

Inheritance

• nucleic_acid_sequence_source_field
  • source_mat_id

Applicable Classes

Name	Description	Modifies Slot
Biosample	Biological source material which can be characterized by an experiment	yes

Properties

• Range: TextValue

Aliases

• source material identifiers

Examples

Value
MPI012345

Identifier and Mapping Information

Annotations

property	value
expected_value	for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

LinkML Source

name: source_mat_id
annotations:
  expected_value:
    tag: expected_value
    value: 'for cultures of microorganisms: identifiers for two culture collections;
      for other material a unique arbitrary identifer'
description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID,
  and as opposed to a particular digital record of a material sample) used for extracting
  nucleic acids, and subsequent sequencing. The identifier can refer either to the
  original material collected or to any derived sub-samples. The INSDC qualifiers
  /specimen_voucher, /bio_material, or /culture_collection may or may not share the
  same value as the source_mat_id field. For instance, the /specimen_voucher qualifier
  and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen
  voucher and sampled tissue with the same identifier. However, the /culture_collection
  qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
  would refer to an identifier from some derived culture from which the nucleic acids
  were extracted (e.g. xatc123 or ark:/2154/R2).
title: source material identifiers
examples:
- value: MPI012345
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- source material identifiers
rank: 1000
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000026
alias: source_mat_id
domain_of:
- Biosample
range: TextValue
multivalued: false