Slot: source material identifiers (source_mat_id)
A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2).
URI: MIXS:0000026
Inheritance
Applicable Classes
| Name |
Description |
Modifies Slot |
| Biosample |
Biological source material which can be characterized by an experiment |
yes |
Properties
Examples
Annotations
| property |
value |
| expected_value |
for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer |
Schema Source
Mappings
| Mapping Type |
Mapped Value |
| self |
MIXS:0000026 |
LinkML Source
name: source_mat_id
annotations:
expected_value:
tag: expected_value
value: 'for cultures of microorganisms: identifiers for two culture collections;
for other material a unique arbitrary identifer'
description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID,
and as opposed to a particular digital record of a material sample) used for extracting
nucleic acids, and subsequent sequencing. The identifier can refer either to the
original material collected or to any derived sub-samples. The INSDC qualifiers
/specimen_voucher, /bio_material, or /culture_collection may or may not share the
same value as the source_mat_id field. For instance, the /specimen_voucher qualifier
and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen
voucher and sampled tissue with the same identifier. However, the /culture_collection
qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
would refer to an identifier from some derived culture from which the nucleic acids
were extracted (e.g. xatc123 or ark:/2154/R2).
title: source material identifiers
examples:
- value: MPI012345
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000026
alias: source_mat_id
domain_of:
- Biosample
range: TextValue
multivalued: false