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Slot: type

the class_uri of the class that has been instantiated

URI: rdf:type

Applicable Classes

Name Description Modifies Slot
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
MaterialEntity no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
MagBin no
CollectingBiosamplesFromSite no
Extraction A material separation in which a desired component of an input material is se... no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
MetatranscriptomeAssembly no
Site no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
EnvironmentalMaterialTerm no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
NamedThing a databased entity or concept/class no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
Configuration A set of parameters that define the actions of a process and is shared among ... no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
ProcessedSample no
MetaproteomicsAnalysis no
PeptideQuantification This is used to link a metaproteomics analysis workflow to a specific peptide... no
PlannedProcess no
Doi A centrally registered identifier symbol used to uniquely identify objects gi... no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
Protocol no
OntologyClass A representation of class defined in an external ontology no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
ProteinQuantification This is used to link a metaproteomics analysis workflow to a specific protein no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
Biosample Biological source material which can be characterized by an experiment no
ImageValue An attribute value representing an image no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
Instrument A material entity that is designed to perform a function in a scientific inve... no
GeneProduct A molecule encoded by a gene that has an evolved function no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
PersonValue An attribute value representing a person no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
FunctionalAnnotationAggMember This class is used to store aggregated results from workflows which produce f... no
MetabolomicsAnalysis no
CreditAssociation This class supports binding associated researchers to studies no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
OntologyRelation A relationship between two ontology classes as specified either directly in t... no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
EukEval This class contains information pertaining to evaluating if a Metagenome-Asse... no
ControlledTermValue A controlled term or class from an ontology no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
WorkflowExecution Represents an instance of an execution of a particular workflow no
ControlledIdentifiedTermValue A controlled term or class from an ontology, requiring the presence of term w... no
DataEmitterProcess A process that generates data objects as output no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
Sample A sample is a material entity that can be characterized by an experiment no
GenomeFeature A feature localized to an interval along a genome no
PortionOfSubstance A portion of any matter of defined composition that has discrete existence, w... no
TimestampValue A value that is a timestamp no
MobilePhaseSegment A fluid mixture of substances that flow though a chromatographic stationary p... no
FailureCategorization no
LibraryPreparation no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
TextValue A basic string value no
FiltrationProcess The process of segregation of phases; e no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
DataObject An object that primarily consists of symbols that represent information no
Pooling physical combination of several instances of like material no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
FunctionalAnnotation An assignment of a function term (e no
GeolocationValue A normalized value for a location on the earth's surface no
NomAnalysis no
CalibrationInformation A calibration object that is associated with a process no
MetatranscriptomeAnnotation no
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
AttributeValue The value for any value of a attribute for a sample no
QuantityValue A simple quantity, e no
Study A study summarizes the overall goal of a research initiative and outlines the... no

Properties

Examples

Value
nmdc:Biosample
nmdc:Study

See Also

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self rdf:type

LinkML Source

name: type
description: the class_uri of the class that has been instantiated
notes:
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
structured_aliases:
  workflow_execution_class:
    literal_form: workflow_execution_class
    predicate: NARROW_SYNONYM
    contexts:
    - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- PeptideQuantification
- ProteinQuantification
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- OntologyRelation
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true