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Slot: type

the class_uri of the class that has been instantiated

URI: rdf:type

Applicable Classes

Name Description Modifies Slot
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
Protocol no
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
WorkflowExecution Represents an instance of an execution of a particular workflow no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
FailureCategorization no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
FiltrationProcess The process of segregation of phases; e no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
TextValue A basic string value no
Biosample Biological source material which can be characterized by an experiment no
Configuration A set of parameters that define the actions of a process and is shared among ... no
GeneProduct A molecule encoded by a gene that has an evolved function no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
Instrument A material entity that is designed to perform a function in a scientific inve... no
AttributeValue The value for any value of a attribute for a sample no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
CreditAssociation This class supports binding associated researchers to studies no
QuantityValue A simple quantity, e no
MetatranscriptomeAssembly no
DataObject An object that primarily consists of symbols that represent information no
EukEval This class contains information pertaining to evaluating if a Metagenome-Asse... no
ProteinQuantification This is used to link a metaproteomics analysis workflow to a specific protein no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
LibraryPreparation no
FunctionalAnnotation An assignment of a function term (e no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
TimestampValue A value that is a timestamp no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
Pooling physical combination of several instances of like material no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MagBin no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
ControlledIdentifiedTermValue A controlled term or class from an ontology, requiring the presence of term w... no
OntologyRelation A relationship between two ontology classes as specified either directly in t... no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
MetabolomicsAnalysis no
FunctionalAnnotationAggMember This class is used to store aggregated results from workflows which produce f... no
PeptideQuantification This is used to link a metaproteomics analysis workflow to a specific peptide... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
CalibrationInformation A calibration object that is associated with a process no
NamedThing a databased entity or concept/class no
Study A study summarizes the overall goal of a research initiative and outlines the... no
MetaproteomicsAnalysis no
ProcessedSample no
PropertyAssertion A structured record of data that doesn't fit nicely within the constraints of... no
ImageValue An attribute value representing an image no
Doi A centrally registered identifier symbol used to uniquely identify objects gi... no
PortionOfSubstance A portion of any matter of defined composition that has discrete existence, w... no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
EnvironmentalMaterialTerm no
MaterialEntity no
DataEmitterProcess A process that generates data objects as output no
OntologyClass A representation of class defined in an external ontology no
MobilePhaseSegment A fluid mixture of substances that flow though a chromatographic stationary p... no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
PlannedProcess no
GenomeFeature A feature localized to an interval along a genome no
Sample A sample is a material entity that can be characterized by an experiment no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
Extraction A material separation in which a desired component of an input material is se... no
PersonValue An attribute value representing a person no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
NomAnalysis no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
GeolocationValue A normalized value for a location on the earth's surface no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
CollectingBiosamplesFromSite no
MetatranscriptomeAnnotation no
ControlledTermValue A controlled term or class from an ontology no
Site no

Properties

Examples

Value
nmdc:Biosample
nmdc:Study

See Also

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self rdf:type

LinkML Source

name: type
description: the class_uri of the class that has been instantiated
notes:
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
structured_aliases:
  workflow_execution_class:
    literal_form: workflow_execution_class
    predicate: NARROW_SYNONYM
    contexts:
    - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- PeptideQuantification
- ProteinQuantification
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- OntologyRelation
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true