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Slot: type

the class_uri of the class that has been instantiated

URI: rdf:type

Applicable Classes

Name Description Modifies Slot
ProtocolExecution A PlannedProces that has PlannedProcess parts no
Instrument A material entity that is designed to perform a function in a scientific inve... no
NomAnalysis no
QuantityValue A simple quantity, e no
Biosample Biological source material which can be characterized by an experiment no
TimestampValue A value that is a timestamp no
ControlledTermValue A controlled term or class from an ontology no
ImageValue An attribute value representing an image no
Pooling physical combination of several instances of like material no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
MaterialEntity no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
OntologyRelation A relationship between two ontology classes as specified either directly in t... no
DataObject An object that primarily consists of symbols that represent information no
MetatranscriptomeAssembly no
ControlledIdentifiedTermValue A controlled term or class from an ontology, requiring the presence of term w... no
AttributeValue The value for any value of a attribute for a sample no
NamedThing a databased entity or concept/class no
CalibrationInformation A calibration object that is associated with a process no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
Study A study summarizes the overall goal of a research initiative and outlines the... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
MagBin no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
Doi A centrally registered identifier symbol used to uniquely identify objects gi... no
PortionOfSubstance A portion of any matter of defined composition that has discrete existence, w... no
PersonValue An attribute value representing a person no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
Sample A sample is a material entity that can be characterized by an experiment no
FunctionalAnnotation An assignment of a function term (e no
CollectingBiosamplesFromSite no
MetaproteomicsAnalysis no
FunctionalAnnotationAggMember no
EnvironmentalMaterialTerm no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
DataEmitterProcess A process that generates data objects as output no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
MetabolomicsAnalysis no
CreditAssociation This class supports binding associated researchers to studies no
Configuration A set of parameters that define the actions of a process and is shared among ... no
MetatranscriptomeAnnotation no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
FailureCategorization no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
ProteinQuantification This is used to link a metaproteomics analysis workflow to a specific protein no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
GeolocationValue A normalized value for a location on the earth's surface no
Protocol no
Extraction A material separation in which a desired component of an input material is se... no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
FiltrationProcess The process of segregation of phases; e no
WorkflowExecution Represents an instance of an execution of a particular workflow no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
LibraryPreparation no
TextValue A basic string value no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
OntologyClass A representation of class defined in an external ontology no
MobilePhaseSegment A fluid mixture of substances that flow though a chromatographic stationary p... no
EukEval This class contains information pertaining to evaluating if a Metagenome-Asse... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
ProcessedSample no
GenomeFeature A feature localized to an interval along a genome no
Site no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
PeptideQuantification This is used to link a metaproteomics analysis workflow to a specific peptide... no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
GeneProduct A molecule encoded by a gene that has an evolved function no
PlannedProcess no

Properties

Examples

Value
nmdc:Biosample
nmdc:Study

See Also

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self rdf:type

LinkML Source

name: type
description: the class_uri of the class that has been instantiated
notes:
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
structured_aliases:
  workflow_execution_class:
    literal_form: workflow_execution_class
    predicate: NARROW_SYNONYM
    contexts:
    - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- PeptideQuantification
- ProteinQuantification
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- OntologyRelation
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true