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Slot: was_informed_by

The primary DataGeneration subclass that the WorkflowExecution subclass depends on.

URI: nmdc:was_informed_by

Applicable Classes

Name Description Modifies Slot
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... yes
MetaproteomicsAnalysis yes
MetatranscriptomeAnnotation yes
MetagenomeSequencing Initial sequencing activity that precedes any analysis yes
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... yes
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... yes
WorkflowExecution Represents an instance of an execution of a particular workflow yes
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... yes
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... yes
NomAnalysis yes
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... yes
MetatranscriptomeAssembly yes
MetabolomicsAnalysis yes

Properties

Comments

  • For version 1 of the proteomics workflow there are input files both from the NucleotideSequencing and MassSpectrometry, the MassSpectrometry record is considered the primary class to reference.

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
narrow prov:wasInformedBy

LinkML Source

name: was_informed_by
description: The primary DataGeneration subclass that the WorkflowExecution subclass
  depends on.
comments:
- For version 1 of the proteomics workflow there are input files both from the NucleotideSequencing
  and MassSpectrometry, the MassSpectrometry record is considered the primary class
  to reference.
from_schema: https://w3id.org/nmdc/nmdc
structured_aliases:
  was_informed_by:
    literal_form: was_informed_by
    predicate: EXACT_SYNONYM
    contexts:
    - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
narrow_mappings:
- prov:wasInformedBy
rank: 1000
alias: was_informed_by
domain_of:
- WorkflowExecution
range: DataGeneration
multivalued: true