External Notebook Examples

This page highlights external notebook exemplars from the nmdc_notebooks repository. Use them as end-to-end learning paths for discovery, integration, and analysis workflows using this package.

If you find any issues with the notebooks, please consider contributing a fix or opening an issue in the nmdc_notebooks repository.

Discovery and Metadata Exploration

• Bioscales Biogeochemical Metadata

• NEON Soil Metadata

• Taxonomy and Metadata Analysis

Visualization and Data Interpretation

• Visualization of NOM Data

Multi-omics Integration and Enrichment

• Integrating Metagenome-Metatranscriptome Data

• Integrating ‘Omics Types Analysis

• Over-representation Analysis

Related Guides

• Quick Start for quick class selection and workflow guidance

• Using MongoDB filters for Python filter recipes and troubleshooting