Index

A

add_message() (sample_annotator.report_model.AnnotationReport method) all_outputs() (sample_annotator.report_model.AnnotationMultiSampleReport method) annotate() (sample_annotator.sample_annotator.SampleAnnotator method) annotate_all() (sample_annotator.sample_annotator.SampleAnnotator method) annotation_sufficiency_score (sample_annotator.report_model.AnnotationReport attribute)

AnnotationMultiSampleReport (class in sample_annotator.report_model) AnnotationReport (class in sample_annotator.report_model) as_dataframe() (sample_annotator.report_model.AnnotationMultiSampleReport method) (sample_annotator.report_model.AnnotationReport method) as_dict() (sample_annotator.report_model.Message method)

B

BadNull (sample_annotator.report_model.Category attribute)

C

Category (class in sample_annotator.report_model) category (sample_annotator.report_model.Message attribute) checklist (sample_annotator.report_model.PackageCombo attribute)

ControlledVocabulary (sample_annotator.report_model.Category attribute) Core (sample_annotator.report_model.Category attribute) create_tests() (in module sample_annotator.sample_utils)

D

description (sample_annotator.report_model.Message attribute)

E

environmental_package (sample_annotator.report_model.PackageCombo attribute)

F

field (sample_annotator.report_model.Message attribute)

G

Geo (sample_annotator.report_model.Category attribute)

geoengine (sample_annotator.sample_annotator.SampleAnnotator attribute)

I

Identifier (sample_annotator.report_model.Category attribute) Inapplicable (sample_annotator.report_model.Category attribute)

infer_package() (sample_annotator.sample_annotator.SampleAnnotator method) input (sample_annotator.report_model.AnnotationReport attribute)

L

list() (sample_annotator.report_model.Category static method)

M

max_severity() (sample_annotator.report_model.AnnotationReport method) measurement_engine (sample_annotator.sample_annotator.SampleAnnotator attribute) MeasurementSyntax (sample_annotator.report_model.Category attribute) Message (class in sample_annotator.report_model) messages (sample_annotator.report_model.AnnotationReport attribute) messages_by_category() (sample_annotator.report_model.AnnotationReport method)

MissingCore (sample_annotator.report_model.Category attribute) module sample_annotator sample_annotator.report_model sample_annotator.sample_annotator sample_annotator.sample_utils

O

output (sample_annotator.report_model.AnnotationReport attribute)

P

package (sample_annotator.report_model.AnnotationReport attribute) PackageCombo (class in sample_annotator.report_model) passes() (sample_annotator.report_model.AnnotationReport method)

perform_geolocation_inference() (sample_annotator.sample_annotator.SampleAnnotator method) perform_inference() (sample_annotator.sample_annotator.SampleAnnotator method) perform_text_mining() (sample_annotator.sample_annotator.SampleAnnotator method)

R

reports (sample_annotator.report_model.AnnotationMultiSampleReport attribute)

S

sample_annotator module sample_annotator.report_model module sample_annotator.sample_annotator module

sample_annotator.sample_utils module sample_id (sample_annotator.report_model.AnnotationReport attribute) SampleAnnotator (class in sample_annotator.sample_annotator) schema (sample_annotator.sample_annotator.SampleAnnotator attribute) severity (sample_annotator.report_model.Message attribute)

T

target_class (sample_annotator.sample_annotator.SampleAnnotator attribute) tidy_enumerations() (sample_annotator.sample_annotator.SampleAnnotator method)

tidy_keys() (sample_annotator.sample_annotator.SampleAnnotator method) tidy_measurements() (sample_annotator.sample_annotator.SampleAnnotator method) tidy_nulls() (sample_annotator.sample_annotator.SampleAnnotator method)

U

Unclassified (sample_annotator.report_model.Category attribute)

Units (sample_annotator.report_model.Category attribute) UnknownField (sample_annotator.report_model.Category attribute)

V

validate_identifier() (sample_annotator.sample_annotator.SampleAnnotator method)

W

was_repaired (sample_annotator.report_model.Message attribute)