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Enum: AnalysisTypeEnum

URI: nmdc_sub_schema:AnalysisTypeEnum

Permissible Values

Value Meaning Description
metabolomics None Mass spectrometry-based analysis of metabolites
lipidomics None Mass spectrometry-based analysis of lipids
metagenomics None Standard short-read metagenomic sequencing
metagenomics_long_read None Long-read metagenomic sequencing
metaproteomics None Mass spectrometry-based analysis of proteins from a mixed community
metatranscriptomics None Short-read metatranscriptomic sequencing of RNA from a mixed community
natural organic matter None Analysis of natural organic matter (NOM), such as by Fourier-transform ion cy...
bulk chemistry None Analysis of bulk chemical properties of a sample, such as pH, conductivity, t...
amplicon sequencing assay OBI:0002767
isolate genome sequencing None Sequencing of DNA from an isolated organism, such as a pure culture
isolate transcriptome sequencing None Sequencing of RNA from an isolated organism, such as a pure culture

Slots

Name Description
analysis_type Select all the data types associated or available for this biosample

Identifier and Mapping Information

Schema Source

LinkML Source

name: AnalysisTypeEnum
from_schema: https://example.com/nmdc_submission_schema
rank: 1000
permissible_values:
  metabolomics:
    text: metabolomics
    description: Mass spectrometry-based analysis of metabolites.
  lipidomics:
    text: lipidomics
    description: Mass spectrometry-based analysis of lipids.
  metagenomics:
    text: metagenomics
    description: Standard short-read metagenomic sequencing
    title: Metagenomics
  metagenomics_long_read:
    text: metagenomics_long_read
    description: Long-read metagenomic sequencing
    title: Metagenomics (long read)
  metaproteomics:
    text: metaproteomics
    description: Mass spectrometry-based analysis of proteins from a mixed community.
  metatranscriptomics:
    text: metatranscriptomics
    description: Short-read metatranscriptomic sequencing of RNA from a mixed community.
  natural organic matter:
    text: natural organic matter
    description: Analysis of natural organic matter (NOM), such as by Fourier-transform
      ion cyclotron resonance mass spectrometry (FTICR-MS).
  bulk chemistry:
    text: bulk chemistry
    description: Analysis of bulk chemical properties of a sample, such as pH, conductivity,
      total carbon, total nitrogen, etc.
  amplicon sequencing assay:
    text: amplicon sequencing assay
    meaning: OBI:0002767
    title: Amplicon sequencing assay
  isolate genome sequencing:
    text: isolate genome sequencing
    description: Sequencing of DNA from an isolated organism, such as a pure culture.
    title: Isolate genome sequencing
    broad_mappings:
    - OBI:0002117
  isolate transcriptome sequencing:
    text: isolate transcriptome sequencing
    description: Sequencing of RNA from an isolated organism, such as a pure culture.
    title: Isolate transcriptome sequencing
    broad_mappings:
    - OBI:0001177