Class: Built Env (BuiltEnvInterface)
built_env dh_interface
URI: nmdc_sub_schema:BuiltEnvInterface
classDiagram
class BuiltEnvInterface
DhMultiviewCommonColumnsMixin <|-- BuiltEnvInterface
SampIdNewTermsMixin <|-- BuiltEnvInterface
DhInterface <|-- BuiltEnvInterface
BuiltEnvInterface : abs_air_humidity
BuiltEnvInterface : address
BuiltEnvInterface : adj_room
BuiltEnvInterface : aero_struc
BuiltEnvInterface : air_temp
BuiltEnvInterface : alt
BuiltEnvInterface : amount_light
BuiltEnvInterface : analysis_type
BuiltEnvInterface --|> AnalysisTypeEnum : analysis_type
BuiltEnvInterface : arch_struc
BuiltEnvInterface --|> arch_struc_enum : arch_struc
BuiltEnvInterface : avg_dew_point
BuiltEnvInterface : avg_occup
BuiltEnvInterface : avg_temp
BuiltEnvInterface : bathroom_count
BuiltEnvInterface : bedroom_count
BuiltEnvInterface : build_docs
BuiltEnvInterface --|> build_docs_enum : build_docs
BuiltEnvInterface : build_occup_type
BuiltEnvInterface --|> build_occup_type_enum : build_occup_type
BuiltEnvInterface : building_setting
BuiltEnvInterface --|> building_setting_enum : building_setting
BuiltEnvInterface : built_struc_age
BuiltEnvInterface : built_struc_set
BuiltEnvInterface : built_struc_type
BuiltEnvInterface : carb_dioxide
BuiltEnvInterface : ceil_area
BuiltEnvInterface : ceil_cond
BuiltEnvInterface --|> ceil_cond_enum : ceil_cond
BuiltEnvInterface : ceil_finish_mat
BuiltEnvInterface --|> ceil_finish_mat_enum : ceil_finish_mat
BuiltEnvInterface : ceil_struc
BuiltEnvInterface : ceil_texture
BuiltEnvInterface --|> ceil_texture_enum : ceil_texture
BuiltEnvInterface : ceil_thermal_mass
BuiltEnvInterface : ceil_type
BuiltEnvInterface --|> ceil_type_enum : ceil_type
BuiltEnvInterface : ceil_water_mold
BuiltEnvInterface : collection_date
BuiltEnvInterface : cool_syst_id
BuiltEnvInterface : date_last_rain
BuiltEnvInterface : depth
BuiltEnvInterface : dew_point
BuiltEnvInterface : door_comp_type
BuiltEnvInterface --|> door_comp_type_enum : door_comp_type
BuiltEnvInterface : door_cond
BuiltEnvInterface --|> door_cond_enum : door_cond
BuiltEnvInterface : door_direct
BuiltEnvInterface --|> door_direct_enum : door_direct
BuiltEnvInterface : door_loc
BuiltEnvInterface --|> door_loc_enum : door_loc
BuiltEnvInterface : door_mat
BuiltEnvInterface --|> door_mat_enum : door_mat
BuiltEnvInterface : door_move
BuiltEnvInterface --|> door_move_enum : door_move
BuiltEnvInterface : door_size
BuiltEnvInterface : door_type
BuiltEnvInterface --|> door_type_enum : door_type
BuiltEnvInterface : door_type_metal
BuiltEnvInterface --|> door_type_metal_enum : door_type_metal
BuiltEnvInterface : door_type_wood
BuiltEnvInterface --|> door_type_wood_enum : door_type_wood
BuiltEnvInterface : door_water_mold
BuiltEnvInterface : drawings
BuiltEnvInterface --|> drawings_enum : drawings
BuiltEnvInterface : ecosystem
BuiltEnvInterface --|> EcosystemEnum : ecosystem
BuiltEnvInterface : ecosystem_category
BuiltEnvInterface --|> EcosystemCategoryEnum : ecosystem_category
BuiltEnvInterface : ecosystem_subtype
BuiltEnvInterface --|> EcosystemSubtypeEnum : ecosystem_subtype
BuiltEnvInterface : ecosystem_type
BuiltEnvInterface --|> EcosystemTypeEnum : ecosystem_type
BuiltEnvInterface : elev
BuiltEnvInterface : elevator
BuiltEnvInterface : env_broad_scale
BuiltEnvInterface : env_local_scale
BuiltEnvInterface : env_medium
BuiltEnvInterface : escalator
BuiltEnvInterface : exp_duct
BuiltEnvInterface : exp_pipe
BuiltEnvInterface : experimental_factor
BuiltEnvInterface : ext_door
BuiltEnvInterface : ext_wall_orient
BuiltEnvInterface --|> ext_wall_orient_enum : ext_wall_orient
BuiltEnvInterface : ext_window_orient
BuiltEnvInterface --|> ext_window_orient_enum : ext_window_orient
BuiltEnvInterface : filter_type
BuiltEnvInterface --|> filter_type_enum : filter_type
BuiltEnvInterface : fireplace_type
BuiltEnvInterface : floor_age
BuiltEnvInterface : floor_area
BuiltEnvInterface : floor_cond
BuiltEnvInterface --|> floor_cond_enum : floor_cond
BuiltEnvInterface : floor_count
BuiltEnvInterface : floor_finish_mat
BuiltEnvInterface --|> floor_finish_mat_enum : floor_finish_mat
BuiltEnvInterface : floor_struc
BuiltEnvInterface --|> floor_struc_enum : floor_struc
BuiltEnvInterface : floor_thermal_mass
BuiltEnvInterface : floor_water_mold
BuiltEnvInterface --|> floor_water_mold_enum : floor_water_mold
BuiltEnvInterface : freq_clean
BuiltEnvInterface : freq_cook
BuiltEnvInterface : furniture
BuiltEnvInterface --|> furniture_enum : furniture
BuiltEnvInterface : gender_restroom
BuiltEnvInterface --|> gender_restroom_enum : gender_restroom
BuiltEnvInterface : geo_loc_name
BuiltEnvInterface : hall_count
BuiltEnvInterface : handidness
BuiltEnvInterface --|> handidness_enum : handidness
BuiltEnvInterface : heat_cool_type
BuiltEnvInterface --|> heat_cool_type_enum : heat_cool_type
BuiltEnvInterface : heat_deliv_loc
BuiltEnvInterface --|> heat_deliv_loc_enum : heat_deliv_loc
BuiltEnvInterface : heat_sys_deliv_meth
BuiltEnvInterface : heat_system_id
BuiltEnvInterface : height_carper_fiber
BuiltEnvInterface : indoor_space
BuiltEnvInterface --|> indoor_space_enum : indoor_space
BuiltEnvInterface : indoor_surf
BuiltEnvInterface --|> indoor_surf_enum : indoor_surf
BuiltEnvInterface : inside_lux
BuiltEnvInterface : int_wall_cond
BuiltEnvInterface --|> int_wall_cond_enum : int_wall_cond
BuiltEnvInterface : last_clean
BuiltEnvInterface : lat_lon
BuiltEnvInterface : light_type
BuiltEnvInterface --|> light_type_enum : light_type
BuiltEnvInterface : max_occup
BuiltEnvInterface : mech_struc
BuiltEnvInterface --|> mech_struc_enum : mech_struc
BuiltEnvInterface : number_pets
BuiltEnvInterface : number_plants
BuiltEnvInterface : number_resident
BuiltEnvInterface : occup_density_samp
BuiltEnvInterface : occup_document
BuiltEnvInterface --|> occup_document_enum : occup_document
BuiltEnvInterface : occup_samp
BuiltEnvInterface : organism_count
BuiltEnvInterface : pres_animal_insect
BuiltEnvInterface : quad_pos
BuiltEnvInterface --|> quad_pos_enum : quad_pos
BuiltEnvInterface : rel_air_humidity
BuiltEnvInterface : rel_humidity_out
BuiltEnvInterface : rel_samp_loc
BuiltEnvInterface --|> rel_samp_loc_enum : rel_samp_loc
BuiltEnvInterface : room_air_exch_rate
BuiltEnvInterface : room_architec_elem
BuiltEnvInterface : room_condt
BuiltEnvInterface --|> room_condt_enum : room_condt
BuiltEnvInterface : room_connected
BuiltEnvInterface --|> room_connected_enum : room_connected
BuiltEnvInterface : room_count
BuiltEnvInterface : room_dim
BuiltEnvInterface : room_door_dist
BuiltEnvInterface : room_door_share
BuiltEnvInterface : room_hallway
BuiltEnvInterface : room_loc
BuiltEnvInterface --|> room_loc_enum : room_loc
BuiltEnvInterface : room_moist_dam_hist
BuiltEnvInterface : room_net_area
BuiltEnvInterface : room_occup
BuiltEnvInterface : room_samp_pos
BuiltEnvInterface --|> room_samp_pos_enum : room_samp_pos
BuiltEnvInterface : room_type
BuiltEnvInterface --|> room_type_enum : room_type
BuiltEnvInterface : room_vol
BuiltEnvInterface : room_wall_share
BuiltEnvInterface : room_window_count
BuiltEnvInterface : samp_floor
BuiltEnvInterface --|> samp_floor_enum : samp_floor
BuiltEnvInterface : samp_name
BuiltEnvInterface : samp_room_id
BuiltEnvInterface : samp_sort_meth
BuiltEnvInterface : samp_time_out
BuiltEnvInterface : samp_weather
BuiltEnvInterface --|> samp_weather_enum : samp_weather
BuiltEnvInterface : sample_link
BuiltEnvInterface : season
BuiltEnvInterface : season_use
BuiltEnvInterface --|> season_use_enum : season_use
BuiltEnvInterface : shad_dev_water_mold
BuiltEnvInterface : shading_device_cond
BuiltEnvInterface --|> shading_device_cond_enum : shading_device_cond
BuiltEnvInterface : shading_device_loc
BuiltEnvInterface : shading_device_mat
BuiltEnvInterface : shading_device_type
BuiltEnvInterface --|> shading_device_type_enum : shading_device_type
BuiltEnvInterface : size_frac
BuiltEnvInterface : source_mat_id
BuiltEnvInterface : space_typ_state
BuiltEnvInterface : specific
BuiltEnvInterface --|> specific_enum : specific
BuiltEnvInterface : specific_ecosystem
BuiltEnvInterface --|> SpecificEcosystemEnum : specific_ecosystem
BuiltEnvInterface : specific_humidity
BuiltEnvInterface : substructure_type
BuiltEnvInterface --|> substructure_type_enum : substructure_type
BuiltEnvInterface : surf_air_cont
BuiltEnvInterface --|> surf_air_cont_enum : surf_air_cont
BuiltEnvInterface : surf_humidity
BuiltEnvInterface : surf_material
BuiltEnvInterface --|> surf_material_enum : surf_material
BuiltEnvInterface : surf_moisture
BuiltEnvInterface : surf_moisture_ph
BuiltEnvInterface : surf_temp
BuiltEnvInterface : temp
BuiltEnvInterface : temp_out
BuiltEnvInterface : train_line
BuiltEnvInterface --|> train_line_enum : train_line
BuiltEnvInterface : train_stat_loc
BuiltEnvInterface --|> train_stat_loc_enum : train_stat_loc
BuiltEnvInterface : train_stop_loc
BuiltEnvInterface --|> train_stop_loc_enum : train_stop_loc
BuiltEnvInterface : typ_occup_density
BuiltEnvInterface : ventilation_type
BuiltEnvInterface : vis_media
BuiltEnvInterface --|> vis_media_enum : vis_media
BuiltEnvInterface : wall_area
BuiltEnvInterface : wall_const_type
BuiltEnvInterface --|> wall_const_type_enum : wall_const_type
BuiltEnvInterface : wall_finish_mat
BuiltEnvInterface --|> wall_finish_mat_enum : wall_finish_mat
BuiltEnvInterface : wall_height
BuiltEnvInterface : wall_loc
BuiltEnvInterface --|> wall_loc_enum : wall_loc
BuiltEnvInterface : wall_surf_treatment
BuiltEnvInterface --|> wall_surf_treatment_enum : wall_surf_treatment
BuiltEnvInterface : wall_texture
BuiltEnvInterface --|> wall_texture_enum : wall_texture
BuiltEnvInterface : wall_thermal_mass
BuiltEnvInterface : wall_water_mold
BuiltEnvInterface : water_feat_size
BuiltEnvInterface : water_feat_type
BuiltEnvInterface --|> water_feat_type_enum : water_feat_type
BuiltEnvInterface : weekday
BuiltEnvInterface --|> weekday_enum : weekday
BuiltEnvInterface : window_cond
BuiltEnvInterface --|> window_cond_enum : window_cond
BuiltEnvInterface : window_cover
BuiltEnvInterface --|> window_cover_enum : window_cover
BuiltEnvInterface : window_horiz_pos
BuiltEnvInterface --|> window_horiz_pos_enum : window_horiz_pos
BuiltEnvInterface : window_loc
BuiltEnvInterface --|> window_loc_enum : window_loc
BuiltEnvInterface : window_mat
BuiltEnvInterface --|> window_mat_enum : window_mat
BuiltEnvInterface : window_open_freq
BuiltEnvInterface : window_size
BuiltEnvInterface : window_status
BuiltEnvInterface : window_type
BuiltEnvInterface --|> window_type_enum : window_type
BuiltEnvInterface : window_vert_pos
BuiltEnvInterface --|> window_vert_pos_enum : window_vert_pos
BuiltEnvInterface : window_water_mold
Inheritance
- DhInterface
- BuiltEnvInterface [ DhMultiviewCommonColumnsMixin SampIdNewTermsMixin]
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
abs_air_humidity | 0..1 String |
Actual mass of water vapor - mh20 - present in the air water vapor mixture | direct |
address | 0..1 String |
The street name and building number where the sampling occurred | direct |
adj_room | 0..1 String |
List of rooms (room number, room name) immediately adjacent to the sampling r... | direct |
aero_struc | 0..1 String |
Aerospace structures typically consist of thin plates with stiffeners for the... | direct |
air_temp | 0..1 String |
Temperature of the air at the time of sampling | direct |
alt | 0..1 recommended String |
Altitude is a term used to identify heights of objects such as airplanes, spa... | direct |
amount_light | 0..1 String |
The unit of illuminance and luminous emittance, measuring luminous flux per u... | direct |
arch_struc | 0..1 ArchStrucEnum |
An architectural structure is a human-made, free-standing, immobile outdoor c... | direct |
avg_dew_point | 0..1 String |
The average of dew point measures taken at the beginning of every hour over a... | direct |
avg_occup | 0..1 String |
Daily average occupancy of room | direct |
avg_temp | 0..1 String |
The average of temperatures taken at the beginning of every hour over a 24 ho... | direct |
bathroom_count | 0..1 String |
The number of bathrooms in the building | direct |
bedroom_count | 0..1 String |
The number of bedrooms in the building | direct |
build_docs | 0..1 BuildDocsEnum |
The building design, construction and operation documents | direct |
build_occup_type | 0..* BuildOccupTypeEnum |
The primary function for which a building or discrete part of a building is i... | direct |
building_setting | 0..1 BuildingSettingEnum |
A location (geography) where a building is set | direct |
built_struc_age | 0..1 String |
The age of the built structure since construction | direct |
built_struc_set | 0..1 String |
The characterization of the location of the built structure as high or low hu... | direct |
built_struc_type | 0..1 String |
A physical structure that is a body or assemblage of bodies in space to form ... | direct |
carb_dioxide | 0..1 String |
Carbon dioxide (gas) amount or concentration at the time of sampling | direct |
ceil_area | 0..1 String |
The area of the ceiling space within the room | direct |
ceil_cond | 0..1 CeilCondEnum |
The physical condition of the ceiling at the time of sampling; photos or vide... | direct |
ceil_finish_mat | 0..1 CeilFinishMatEnum |
The type of material used to finish a ceiling | direct |
ceil_struc | 0..1 String |
The construction format of the ceiling | direct |
ceil_texture | 0..1 CeilTextureEnum |
The feel, appearance, or consistency of a ceiling surface | direct |
ceil_thermal_mass | 0..1 String |
The ability of the ceiling to provide inertia against temperature fluctuation... | direct |
ceil_type | 0..1 CeilTypeEnum |
The type of ceiling according to the ceiling's appearance or construction | direct |
ceil_water_mold | 0..1 String |
Signs of the presence of mold or mildew on the ceiling | direct |
collection_date | 1..1 String |
The date of sampling | direct |
cool_syst_id | 0..1 String |
The cooling system identifier | direct |
date_last_rain | 0..1 String |
The date of the last time it rained | direct |
depth | 0..1 recommended String |
The vertical distance below local surface, e | direct |
dew_point | 0..1 String |
The temperature to which a given parcel of humid air must be cooled, at const... | direct |
door_comp_type | 0..1 DoorCompTypeEnum |
The composite type of the door | direct |
door_cond | 0..1 DoorCondEnum |
The phsical condition of the door | direct |
door_direct | 0..1 DoorDirectEnum |
The direction the door opens | direct |
door_loc | 0..1 DoorLocEnum |
The relative location of the door in the room | direct |
door_mat | 0..1 DoorMatEnum |
The material the door is composed of | direct |
door_move | 0..1 DoorMoveEnum |
The type of movement of the door | direct |
door_size | 0..1 String |
The size of the door | direct |
door_type | 0..1 DoorTypeEnum |
The type of door material | direct |
door_type_metal | 0..1 DoorTypeMetalEnum |
The type of metal door | direct |
door_type_wood | 0..1 DoorTypeWoodEnum |
The type of wood door | direct |
door_water_mold | 0..1 String |
Signs of the presence of mold or mildew on a door | direct |
drawings | 0..1 DrawingsEnum |
The buildings architectural drawings; if design is chosen, indicate phase-con... | direct |
ecosystem | 0..1 recommended EcosystemEnum |
An ecosystem is a combination of a physical environment (abiotic factors) and... | direct |
ecosystem_category | 0..1 recommended EcosystemCategoryEnum |
Ecosystem categories represent divisions within the ecosystem based on specif... | direct |
ecosystem_subtype | 0..1 recommended EcosystemSubtypeEnum |
Ecosystem subtypes represent further subdivision of Ecosystem types into more... | direct |
ecosystem_type | 0..1 recommended EcosystemTypeEnum |
Ecosystem types represent things having common characteristics within the Eco... | direct |
elev | 1..1 Float |
Elevation of the sampling site is its height above a fixed reference point, m... | direct |
elevator | 0..1 String |
The number of elevators within the built structure | direct |
env_broad_scale | 1..1 String |
In this field, report which major environmental system your sample or specime... | direct |
env_local_scale | 1..1 String |
Report the entity or entities which are in the sample or specimen’s local vic... | direct |
env_medium | 1..1 String |
Report the environmental material(s) immediately surrounding the sample or sp... | direct |
escalator | 0..1 String |
The number of escalators within the built structure | direct |
exp_duct | 0..1 String |
The amount of exposed ductwork in the room | direct |
exp_pipe | 0..1 String |
The number of exposed pipes in the room | direct |
experimental_factor | 0..1 String |
Experimental factors are essentially the variable aspects of an experiment de... | direct |
ext_door | 0..1 String |
The number of exterior doors in the built structure | direct |
ext_wall_orient | 0..1 ExtWallOrientEnum |
The orientation of the exterior wall | direct |
ext_window_orient | 0..1 ExtWindowOrientEnum |
The compass direction the exterior window of the room is facing | direct |
filter_type | 0..* FilterTypeEnum |
A device which removes solid particulates or airborne molecular contaminants | direct |
fireplace_type | 0..1 String |
A firebox with chimney | direct |
floor_age | 0..1 String |
The time period since installment of the carpet or flooring | direct |
floor_area | 0..1 String |
The area of the floor space within the room | direct |
floor_cond | 0..1 FloorCondEnum |
The physical condition of the floor at the time of sampling; photos or video ... | direct |
floor_count | 0..1 String |
The number of floors in the building, including basements and mechanical pent... | direct |
floor_finish_mat | 0..1 FloorFinishMatEnum |
The floor covering type; the finished surface that is walked on | direct |
floor_struc | 0..1 FloorStrucEnum |
Refers to the structural elements and subfloor upon which the finish flooring... | direct |
floor_thermal_mass | 0..1 String |
The ability of the floor to provide inertia against temperature fluctuations | direct |
floor_water_mold | 0..1 FloorWaterMoldEnum |
Signs of the presence of mold or mildew in a room | direct |
freq_clean | 0..1 String |
The number of times the sample location is cleaned | direct |
freq_cook | 0..1 String |
The number of times a meal is cooked per week | direct |
furniture | 0..1 FurnitureEnum |
The types of furniture present in the sampled room | direct |
gender_restroom | 0..1 GenderRestroomEnum |
The gender type of the restroom | direct |
geo_loc_name | 1..1 String |
The geographical origin of the sample as defined by the country or sea name f... | direct |
hall_count | 0..1 String |
The total count of hallways and cooridors in the built structure | direct |
handidness | 0..1 HandidnessEnum |
The handidness of the individual sampled | direct |
heat_cool_type | 0..* HeatCoolTypeEnum |
Methods of conditioning or heating a room or building | direct |
heat_deliv_loc | 0..1 HeatDelivLocEnum |
The location of heat delivery within the room | direct |
heat_sys_deliv_meth | 0..1 String |
The method by which the heat is delivered through the system | direct |
heat_system_id | 0..1 String |
The heating system identifier | direct |
height_carper_fiber | 0..1 String |
The average carpet fiber height in the indoor environment | direct |
indoor_space | 0..1 IndoorSpaceEnum |
A distinguishable space within a structure, the purpose for which discrete ar... | direct |
indoor_surf | 0..1 IndoorSurfEnum |
Type of indoor surface | direct |
inside_lux | 0..1 String |
The recorded value at sampling time (power density) | direct |
int_wall_cond | 0..1 IntWallCondEnum |
The physical condition of the wall at the time of sampling; photos or video p... | direct |
last_clean | 0..1 String |
The last time the floor was cleaned (swept, mopped, vacuumed) | direct |
lat_lon | 1..1 String |
The geographical origin of the sample as defined by latitude and longitude | direct |
light_type | 0..* LightTypeEnum |
Application of light to achieve some practical or aesthetic effect | direct |
max_occup | 0..1 String |
The maximum amount of people allowed in the indoor environment | direct |
mech_struc | 0..1 MechStrucEnum |
mechanical structure: a moving structure | direct |
number_pets | 0..1 String |
The number of pets residing in the sampled space | direct |
number_plants | 0..1 String |
The number of plant(s) in the sampling space | direct |
number_resident | 0..1 String |
The number of individuals currently occupying in the sampling location | direct |
occup_density_samp | 0..1 String |
Average number of occupants at time of sampling per square footage | direct |
occup_document | 0..1 OccupDocumentEnum |
The type of documentation of occupancy | direct |
occup_samp | 0..1 String |
Number of occupants present at time of sample within the given space | direct |
organism_count | 0..1 String |
Total cell count of any organism (or group of organisms) per gram, volume or ... | direct |
pres_animal_insect | 0..1 String |
The type and number of animals or insects present in the sampling space | direct |
quad_pos | 0..1 QuadPosEnum |
The quadrant position of the sampling room within the building | direct |
rel_air_humidity | 0..1 String |
Partial vapor and air pressure, density of the vapor and air, or by the actua... | direct |
rel_humidity_out | 0..1 String |
The recorded outside relative humidity value at the time of sampling | direct |
rel_samp_loc | 0..1 RelSampLocEnum |
The sampling location within the train car | direct |
room_air_exch_rate | 0..1 String |
The rate at which outside air replaces indoor air in a given space | direct |
room_architec_elem | 0..1 String |
The unique details and component parts that, together, form the architecture ... | direct |
room_condt | 0..1 RoomCondtEnum |
The condition of the room at the time of sampling | direct |
room_connected | 0..1 RoomConnectedEnum |
List of rooms connected to the sampling room by a doorway | direct |
room_count | 0..1 String |
The total count of rooms in the built structure including all room types | direct |
room_dim | 0..1 String |
The length, width and height of sampling room | direct |
room_door_dist | 0..1 String |
Distance between doors (meters) in the hallway between the sampling room and ... | direct |
room_door_share | 0..1 String |
List of room(s) (room number, room name) sharing a door with the sampling roo... | direct |
room_hallway | 0..1 String |
List of room(s) (room number, room name) located in the same hallway as sampl... | direct |
room_loc | 0..1 RoomLocEnum |
The position of the room within the building | direct |
room_moist_dam_hist | 0..1 Integer |
The history of moisture damage or mold in the past 12 months | direct |
room_net_area | 0..1 String |
The net floor area of sampling room | direct |
room_occup | 0..1 String |
Count of room occupancy at time of sampling | direct |
room_samp_pos | 0..1 RoomSampPosEnum |
The horizontal sampling position in the room relative to architectural elemen... | direct |
room_type | 0..1 RoomTypeEnum |
The main purpose or activity of the sampling room | direct |
room_vol | 0..1 String |
Volume of sampling room | direct |
room_wall_share | 0..1 String |
List of room(s) (room number, room name) sharing a wall with the sampling roo... | direct |
room_window_count | 0..1 Integer |
Number of windows in the room | direct |
samp_floor | 0..1 SampFloorEnum |
The floor of the building, where the sampling room is located | direct |
samp_room_id | 0..1 String |
Sampling room number | direct |
samp_sort_meth | 0..1 String |
Method by which samples are sorted; open face filter collecting total suspend... | direct |
samp_time_out | 0..1 String |
The recent and long term history of outside sampling | direct |
samp_weather | 0..1 SampWeatherEnum |
The weather on the sampling day | direct |
sample_link | 0..1 recommended String |
A unique identifier to assign parent-child, subsample, or sibling samples | direct |
season | 0..1 String |
The season when sampling occurred | direct |
season_use | 0..1 SeasonUseEnum |
The seasons the space is occupied | direct |
shad_dev_water_mold | 0..1 String |
Signs of the presence of mold or mildew on the shading device | direct |
shading_device_cond | 0..1 ShadingDeviceCondEnum |
The physical condition of the shading device at the time of sampling | direct |
shading_device_loc | 0..1 String |
The location of the shading device in relation to the built structure | direct |
shading_device_mat | 0..1 String |
The material the shading device is composed of | direct |
shading_device_type | 0..1 ShadingDeviceTypeEnum |
The type of shading device | direct |
size_frac | 0..1 String |
Filtering pore size used in sample preparation | direct |
space_typ_state | 0..1 String |
Customary or normal state of the space | direct |
specific | 0..1 SpecificEnum |
The building specifications | direct |
specific_ecosystem | 0..1 recommended SpecificEcosystemEnum |
Specific ecosystems represent specific features of the environment like aphot... | direct |
specific_humidity | 0..1 String |
The mass of water vapour in a unit mass of moist air, usually expressed as gr... | direct |
substructure_type | 0..* SubstructureTypeEnum |
The substructure or under building is that largely hidden section of the buil... | direct |
surf_air_cont | 0..* SurfAirContEnum |
Contaminant identified on surface | direct |
surf_humidity | 0..1 String |
Surfaces: water activity as a function of air and material moisture | direct |
surf_material | 0..1 SurfMaterialEnum |
Surface materials at the point of sampling | direct |
surf_moisture | 0..1 String |
Water held on a surface | direct |
surf_moisture_ph | 0..1 Double |
ph measurement of surface | direct |
surf_temp | 0..1 String |
Temperature of the surface at the time of sampling | direct |
temp | 0..1 String |
Temperature of the sample at the time of sampling | direct |
temp_out | 0..1 String |
The recorded temperature value at sampling time outside | direct |
train_line | 0..1 TrainLineEnum |
The subway line name | direct |
train_stat_loc | 0..1 TrainStatLocEnum |
The train station collection location | direct |
train_stop_loc | 0..1 TrainStopLocEnum |
The train stop collection location | direct |
typ_occup_density | 0..1 Double |
Customary or normal density of occupants | direct |
ventilation_type | 0..1 String |
Ventilation system used in the sampled premises | direct |
vis_media | 0..1 VisMediaEnum |
The building visual media | direct |
wall_area | 0..1 String |
The total area of the sampled room's walls | direct |
wall_const_type | 0..1 WallConstTypeEnum |
The building class of the wall defined by the composition of the building ele... | direct |
wall_finish_mat | 0..1 WallFinishMatEnum |
The material utilized to finish the outer most layer of the wall | direct |
wall_height | 0..1 String |
The average height of the walls in the sampled room | direct |
wall_loc | 0..1 WallLocEnum |
The relative location of the wall within the room | direct |
wall_surf_treatment | 0..1 WallSurfTreatmentEnum |
The surface treatment of interior wall | direct |
wall_texture | 0..1 WallTextureEnum |
The feel, appearance, or consistency of a wall surface | direct |
wall_thermal_mass | 0..1 String |
The ability of the wall to provide inertia against temperature fluctuations | direct |
wall_water_mold | 0..1 String |
Signs of the presence of mold or mildew on a wall | direct |
water_feat_size | 0..1 String |
The size of the water feature | direct |
water_feat_type | 0..1 WaterFeatTypeEnum |
The type of water feature present within the building being sampled | direct |
weekday | 0..1 WeekdayEnum |
The day of the week when sampling occurred | direct |
window_cond | 0..1 WindowCondEnum |
The physical condition of the window at the time of sampling | direct |
window_cover | 0..1 WindowCoverEnum |
The type of window covering | direct |
window_horiz_pos | 0..1 WindowHorizPosEnum |
The horizontal position of the window on the wall | direct |
window_loc | 0..1 WindowLocEnum |
The relative location of the window within the room | direct |
window_mat | 0..1 WindowMatEnum |
The type of material used to finish a window | direct |
window_open_freq | 0..1 String |
The number of times windows are opened per week | direct |
window_size | 0..1 String |
The window's length and width | direct |
window_status | 0..1 String |
Defines whether the windows were open or closed during environmental testing | direct |
window_type | 0..1 WindowTypeEnum |
The type of windows | direct |
window_vert_pos | 0..1 WindowVertPosEnum |
The vertical position of the window on the wall | direct |
window_water_mold | 0..1 String |
Signs of the presence of mold or mildew on the window | direct |
analysis_type | 1..* AnalysisTypeEnum |
Select all the data types associated or available for this biosample | DhMultiviewCommonColumnsMixin |
samp_name | 1..1 String |
A local identifier or name that for the material sample collected | DhMultiviewCommonColumnsMixin |
source_mat_id | 0..1 String |
A globally unique identifier assigned to the biological sample | DhMultiviewCommonColumnsMixin |
Usages
used by | used in | type | used |
---|---|---|---|
SampleData | built_env_data | range | BuiltEnvInterface |
Identifier and Mapping Information
Annotations
property | value |
---|---|
excel_worksheet_name | built environment |
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | nmdc_sub_schema:BuiltEnvInterface |
native | nmdc_sub_schema:BuiltEnvInterface |
LinkML Source
Direct
name: BuiltEnvInterface
annotations:
excel_worksheet_name:
tag: excel_worksheet_name
value: built environment
description: built_env dh_interface
title: Built Env
from_schema: https://example.com/nmdc_submission_schema
is_a: DhInterface
mixins:
- DhMultiviewCommonColumnsMixin
- SampIdNewTermsMixin
slots:
- abs_air_humidity
- address
- adj_room
- aero_struc
- air_temp
- alt
- amount_light
- arch_struc
- avg_dew_point
- avg_occup
- avg_temp
- bathroom_count
- bedroom_count
- build_docs
- build_occup_type
- building_setting
- built_struc_age
- built_struc_set
- built_struc_type
- carb_dioxide
- ceil_area
- ceil_cond
- ceil_finish_mat
- ceil_struc
- ceil_texture
- ceil_thermal_mass
- ceil_type
- ceil_water_mold
- collection_date
- cool_syst_id
- date_last_rain
- depth
- dew_point
- door_comp_type
- door_cond
- door_direct
- door_loc
- door_mat
- door_move
- door_size
- door_type
- door_type_metal
- door_type_wood
- door_water_mold
- drawings
- ecosystem
- ecosystem_category
- ecosystem_subtype
- ecosystem_type
- elev
- elevator
- env_broad_scale
- env_local_scale
- env_medium
- escalator
- exp_duct
- exp_pipe
- experimental_factor
- ext_door
- ext_wall_orient
- ext_window_orient
- filter_type
- fireplace_type
- floor_age
- floor_area
- floor_cond
- floor_count
- floor_finish_mat
- floor_struc
- floor_thermal_mass
- floor_water_mold
- freq_clean
- freq_cook
- furniture
- gender_restroom
- geo_loc_name
- hall_count
- handidness
- heat_cool_type
- heat_deliv_loc
- heat_sys_deliv_meth
- heat_system_id
- height_carper_fiber
- indoor_space
- indoor_surf
- inside_lux
- int_wall_cond
- last_clean
- lat_lon
- light_type
- max_occup
- mech_struc
- number_pets
- number_plants
- number_resident
- occup_density_samp
- occup_document
- occup_samp
- organism_count
- pres_animal_insect
- quad_pos
- rel_air_humidity
- rel_humidity_out
- rel_samp_loc
- room_air_exch_rate
- room_architec_elem
- room_condt
- room_connected
- room_count
- room_dim
- room_door_dist
- room_door_share
- room_hallway
- room_loc
- room_moist_dam_hist
- room_net_area
- room_occup
- room_samp_pos
- room_type
- room_vol
- room_wall_share
- room_window_count
- samp_floor
- samp_room_id
- samp_sort_meth
- samp_time_out
- samp_weather
- sample_link
- season
- season_use
- shad_dev_water_mold
- shading_device_cond
- shading_device_loc
- shading_device_mat
- shading_device_type
- size_frac
- space_typ_state
- specific
- specific_ecosystem
- specific_humidity
- substructure_type
- surf_air_cont
- surf_humidity
- surf_material
- surf_moisture
- surf_moisture_ph
- surf_temp
- temp
- temp_out
- train_line
- train_stat_loc
- train_stop_loc
- typ_occup_density
- ventilation_type
- vis_media
- wall_area
- wall_const_type
- wall_finish_mat
- wall_height
- wall_loc
- wall_surf_treatment
- wall_texture
- wall_thermal_mass
- wall_water_mold
- water_feat_size
- water_feat_type
- weekday
- window_cond
- window_cover
- window_horiz_pos
- window_loc
- window_mat
- window_open_freq
- window_size
- window_status
- window_type
- window_vert_pos
- window_water_mold
slot_usage:
abs_air_humidity:
name: abs_air_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram per gram, kilogram per kilogram, kilogram, pound
occurrence:
tag: occurrence
value: '1'
description: Actual mass of water vapor - mh20 - present in the air water vapor
mixture
title: absolute air humidity
examples:
- value: 9 gram per gram
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- absolute air humidity
rank: 61
is_a: core field
slot_uri: MIXS:0000122
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
address:
name: address
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The street name and building number where the sampling occurred.
title: address
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- address
rank: 62
is_a: core field
string_serialization: '{integer}{text}'
slot_uri: MIXS:0000218
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
adj_room:
name: adj_room
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of rooms (room number, room name) immediately adjacent to the
sampling room
title: adjacent rooms
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- adjacent rooms
rank: 63
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000219
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
aero_struc:
name: aero_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Aerospace structures typically consist of thin plates with stiffeners
for the external surfaces, bulkheads and frames to support the shape and fasteners
such as welds, rivets, screws and bolts to hold the components together
title: aerospace structure
examples:
- value: plane
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- aerospace structure
rank: 64
is_a: core field
string_serialization: '[plane|glider]'
slot_uri: MIXS:0000773
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
air_temp:
name: air_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: Temperature of the air at the time of sampling
title: air temperature
examples:
- value: 20 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- air temperature
rank: 65
is_a: core field
slot_uri: MIXS:0000124
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
alt:
name: alt
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Altitude is a term used to identify heights of objects such as airplanes,
space shuttles, rockets, atmospheric balloons and heights of places such as
atmospheric layers and clouds. It is used to measure the height of an object
which is above the earth's surface. In this context, the altitude measurement
is the vertical distance between the earth's surface above sea level and the
sampled position in the air
title: altitude
examples:
- value: 100 meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- altitude
rank: 26
is_a: environment field
slot_uri: MIXS:0000094
multivalued: false
owner: Biosample
domain_of:
- agriculture
- air
- built environment
- core
- food-animal and animal feed
- food-farm environment
- food-food production facility
- food-human foods
- host-associated
- human-associated
- human-gut
- human-oral
- human-skin
- human-vaginal
- hydrocarbon resources-cores
- hydrocarbon resources-fluids_swabs
- microbial mat_biofilm
- miscellaneous natural or artificial environment
- plant-associated
- sediment
- soil
- symbiont-associated
- wastewater_sludge
- water
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HostAssociatedInterface
- MiscEnvsInterface
slot_group: mixs_modified_section
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
amount_light:
name: amount_light
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: lux, lumens per square meter
occurrence:
tag: occurrence
value: '1'
description: The unit of illuminance and luminous emittance, measuring luminous
flux per unit area
title: amount of light
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- amount of light
rank: 66
is_a: core field
slot_uri: MIXS:0000140
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
arch_struc:
name: arch_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: An architectural structure is a human-made, free-standing, immobile
outdoor construction
title: architectural structure
examples:
- value: shed
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- architectural structure
rank: 67
is_a: core field
slot_uri: MIXS:0000774
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: arch_struc_enum
avg_dew_point:
name: avg_dew_point
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The average of dew point measures taken at the beginning of every
hour over a 24 hour period on the sampling day
title: average dew point
examples:
- value: 25.5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average dew point
rank: 68
is_a: core field
slot_uri: MIXS:0000141
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
avg_occup:
name: avg_occup
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Daily average occupancy of room. Indicate the number of person(s)
daily occupying the sampling room.
title: average daily occupancy
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average daily occupancy
rank: 69
is_a: core field
slot_uri: MIXS:0000775
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
avg_temp:
name: avg_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The average of temperatures taken at the beginning of every hour
over a 24 hour period on the sampling day
title: average temperature
examples:
- value: 12.5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average temperature
rank: 70
is_a: core field
slot_uri: MIXS:0000142
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
bathroom_count:
name: bathroom_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of bathrooms in the building
title: bathroom count
examples:
- value: '1'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- bathroom count
rank: 71
is_a: core field
slot_uri: MIXS:0000776
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
bedroom_count:
name: bedroom_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of bedrooms in the building
title: bedroom count
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- bedroom count
rank: 72
is_a: core field
slot_uri: MIXS:0000777
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
build_docs:
name: build_docs
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building design, construction and operation documents
title: design, construction, and operation documents
examples:
- value: maintenance plans
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- design, construction, and operation documents
rank: 73
is_a: core field
slot_uri: MIXS:0000787
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: build_docs_enum
build_occup_type:
name: build_occup_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: The primary function for which a building or discrete part of a building
is intended to be used
title: building occupancy type
examples:
- value: market
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- building occupancy type
rank: 74
is_a: core field
slot_uri: MIXS:0000761
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: build_occup_type_enum
building_setting:
name: building_setting
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A location (geography) where a building is set
title: building setting
examples:
- value: rural
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- building setting
rank: 75
is_a: core field
slot_uri: MIXS:0000768
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: building_setting_enum
built_struc_age:
name: built_struc_age
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: year
occurrence:
tag: occurrence
value: '1'
description: The age of the built structure since construction
title: built structure age
examples:
- value: '15'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure age
rank: 76
is_a: core field
slot_uri: MIXS:0000145
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
built_struc_set:
name: built_struc_set
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The characterization of the location of the built structure as high
or low human density
title: built structure setting
examples:
- value: rural
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure setting
rank: 77
is_a: core field
string_serialization: '[urban|rural]'
slot_uri: MIXS:0000778
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
built_struc_type:
name: built_struc_type
annotations:
expected_value:
tag: expected_value
value: free text
occurrence:
tag: occurrence
value: '1'
description: A physical structure that is a body or assemblage of bodies in space
to form a system capable of supporting loads
title: built structure type
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure type
rank: 78
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000721
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
carb_dioxide:
name: carb_dioxide
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: micromole per liter, parts per million
occurrence:
tag: occurrence
value: '1'
description: Carbon dioxide (gas) amount or concentration at the time of sampling
title: carbon dioxide
examples:
- value: 410 parts per million
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- carbon dioxide
rank: 50
is_a: core field
slot_uri: MIXS:0000097
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_area:
name: ceil_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The area of the ceiling space within the room
title: ceiling area
examples:
- value: 25 square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling area
rank: 79
is_a: core field
slot_uri: MIXS:0000148
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_cond:
name: ceil_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the ceiling at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: ceiling condition
examples:
- value: damaged
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling condition
rank: 80
is_a: core field
slot_uri: MIXS:0000779
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_cond_enum
ceil_finish_mat:
name: ceil_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of material used to finish a ceiling
title: ceiling finish material
examples:
- value: stucco
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling finish material
rank: 81
is_a: core field
slot_uri: MIXS:0000780
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_finish_mat_enum
ceil_struc:
name: ceil_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The construction format of the ceiling
title: ceiling structure
examples:
- value: concrete
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling structure
rank: 82
is_a: core field
string_serialization: '[wood frame|concrete]'
slot_uri: MIXS:0000782
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
ceil_texture:
name: ceil_texture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The feel, appearance, or consistency of a ceiling surface
title: ceiling texture
examples:
- value: popcorn
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling texture
rank: 83
is_a: core field
slot_uri: MIXS:0000783
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_texture_enum
ceil_thermal_mass:
name: ceil_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the ceiling to provide inertia against temperature
fluctuations. Generally this means concrete that is exposed. A metal deck that
supports a concrete slab will act thermally as long as it is exposed to room
air flow
title: ceiling thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling thermal mass
rank: 84
is_a: core field
slot_uri: MIXS:0000143
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_type:
name: ceil_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of ceiling according to the ceiling's appearance or construction
title: ceiling type
examples:
- value: coffered
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling type
rank: 85
is_a: core field
slot_uri: MIXS:0000784
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_type_enum
ceil_water_mold:
name: ceil_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the ceiling
title: ceiling signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling signs of water/mold
rank: 86
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000781
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
collection_date:
name: collection_date
annotations:
expected_value:
tag: expected_value
value: date and time
description: The date of sampling
title: collection date
notes:
- MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only
- Use modified term (amended definition)
examples:
- value: '2021-04-15'
- value: 2021-04
- value: '2021'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- collection date
rank: 3
is_a: environment field
string_serialization: '{date, arbitrary precision}'
slot_uri: MIXS:0000011
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: ^[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?$
cool_syst_id:
name: cool_syst_id
annotations:
expected_value:
tag: expected_value
value: unique identifier
occurrence:
tag: occurrence
value: '1'
description: The cooling system identifier
title: cooling system identifier
examples:
- value: '12345'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- cooling system identifier
rank: 87
is_a: core field
slot_uri: MIXS:0000785
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
date_last_rain:
name: date_last_rain
annotations:
expected_value:
tag: expected_value
value: timestamp
occurrence:
tag: occurrence
value: '1'
description: The date of the last time it rained
title: date last rain
examples:
- value: 2018-05-11:T14:30Z
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- date last rain
rank: 88
is_a: core field
slot_uri: MIXS:0000786
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
depth:
name: depth
annotations:
expected_value:
tag: expected_value
value: measurement value
description: The vertical distance below local surface, e.g. for sediment or soil
samples depth is measured from sediment or soil surface, respectively. Depth
can be reported as an interval for subsurface samples.
title: depth, meters
notes:
- Use modified term
comments:
- All depths must be reported in meters. Provide the numerical portion only.
examples:
- value: 0 - 0.1
- value: '1'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- depth
rank: 9
is_a: environment field
string_serialization: '{float}|{float}-{float}'
slot_uri: MIXS:0000018
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?(\s*-\s*[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?)?$
dew_point:
name: dew_point
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The temperature to which a given parcel of humid air must be cooled,
at constant barometric pressure, for water vapor to condense into water.
title: dew point
examples:
- value: 22 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- dew point
rank: 89
is_a: core field
slot_uri: MIXS:0000129
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
door_comp_type:
name: door_comp_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The composite type of the door
title: door type, composite
examples:
- value: revolving
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, composite
rank: 90
is_a: core field
slot_uri: MIXS:0000795
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_comp_type_enum
door_cond:
name: door_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The phsical condition of the door
title: door condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door condition
rank: 91
is_a: core field
slot_uri: MIXS:0000788
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_cond_enum
door_direct:
name: door_direct
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The direction the door opens
title: door direction of opening
examples:
- value: inward
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door direction of opening
rank: 92
is_a: core field
slot_uri: MIXS:0000789
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_direct_enum
door_loc:
name: door_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the door in the room
title: door location
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door location
rank: 93
is_a: core field
slot_uri: MIXS:0000790
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_loc_enum
door_mat:
name: door_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The material the door is composed of
title: door material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door material
rank: 94
is_a: core field
slot_uri: MIXS:0000791
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_mat_enum
door_move:
name: door_move
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of movement of the door
title: door movement
examples:
- value: swinging
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door movement
rank: 95
is_a: core field
slot_uri: MIXS:0000792
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_move_enum
door_size:
name: door_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The size of the door
title: door area or size
examples:
- value: 2.5 square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door area or size
rank: 96
is_a: core field
slot_uri: MIXS:0000158
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
door_type:
name: door_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of door material
title: door type
examples:
- value: wooden
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type
rank: 97
is_a: core field
slot_uri: MIXS:0000794
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_enum
door_type_metal:
name: door_type_metal
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of metal door
title: door type, metal
examples:
- value: hollow
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, metal
rank: 98
is_a: core field
slot_uri: MIXS:0000796
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_metal_enum
door_type_wood:
name: door_type_wood
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of wood door
title: door type, wood
examples:
- value: battened
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, wood
rank: 99
is_a: core field
slot_uri: MIXS:0000797
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_wood_enum
door_water_mold:
name: door_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on a door
title: door signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door signs of water/mold
rank: 100
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000793
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
drawings:
name: drawings
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The buildings architectural drawings; if design is chosen, indicate
phase-conceptual, schematic, design development, and construction documents
title: drawings
examples:
- value: sketch
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- drawings
rank: 101
is_a: core field
slot_uri: MIXS:0000798
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: drawings_enum
ecosystem:
name: ecosystem
description: An ecosystem is a combination of a physical environment (abiotic
factors) and all the organisms (biotic factors) that interact with this environment.
Ecosystem is in position 1/5 in a GOLD path.
comments:
- The abiotic factors play a profound role on the type and composition of organisms
in a given environment. The GOLD Ecosystem at the top of the five-level classification
system is aimed at capturing the broader environment from which an organism
or environmental sample is collected. The three broad groups under Ecosystem
are Environmental, Host-associated, and Engineered. They represent samples collected
from a natural environment or from another organism or from engineered environments
like bioreactors respectively.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 9
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemEnum
recommended: true
ecosystem_category:
name: ecosystem_category
description: Ecosystem categories represent divisions within the ecosystem based
on specific characteristics of the environment from where an organism or sample
is isolated. Ecosystem category is in position 2/5 in a GOLD path.
comments:
- The Environmental ecosystem (for example) is divided into Air, Aquatic and Terrestrial.
Ecosystem categories for Host-associated samples can be individual hosts or
phyla and for engineered samples it may be manipulated environments like bioreactors,
solid waste etc.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 10
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemCategoryEnum
recommended: true
ecosystem_subtype:
name: ecosystem_subtype
description: Ecosystem subtypes represent further subdivision of Ecosystem types
into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD
path.
comments:
- Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided
(for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in
the Ecosystem subtype category.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 12
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemSubtypeEnum
recommended: true
ecosystem_type:
name: ecosystem_type
description: Ecosystem types represent things having common characteristics within
the Ecosystem Category. These common characteristics based grouping is still
broad but specific to the characteristics of a given environment. Ecosystem
type is in position 3/5 in a GOLD path.
comments:
- The Aquatic ecosystem category (for example) may have ecosystem types like Marine
or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor
air as different Ecosystem Types. In the case of Host-associated samples, ecosystem
type can represent Respiratory system, Digestive system, Roots etc.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 11
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemTypeEnum
recommended: true
elev:
name: elev
description: Elevation of the sampling site is its height above a fixed reference
point, most commonly the mean sea level. Elevation is mainly used when referring
to points on the earth's surface, while altitude is used for points above the
surface, such as an aircraft in flight or a spacecraft in orbit.
title: elevation, meters
comments:
- All elevations must be reported in meters. Provide the numerical portion only.
- Please use https://www.advancedconverter.com/map-tools/find-altitude-by-coordinates,
if needed, to help estimate the elevation based on latitude and longitude coordinates.
examples:
- value: '225'
- value: '0'
- value: '1250'
from_schema: https://w3id.org/nmdc/nmdc
rank: 6
is_a: environment field
slot_uri: MIXS:0000093
multivalued: false
owner: Biosample
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: float
required: true
elevator:
name: elevator
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of elevators within the built structure
title: elevator count
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- elevator count
rank: 102
is_a: core field
slot_uri: MIXS:0000799
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
env_broad_scale:
name: env_broad_scale
description: 'In this field, report which major environmental system your sample
or specimen came from. The systems identified should have a coarse spatial grain,
to provide the general environmental context of where the sampling was done
(e.g. were you in the desert or a rainforest?). We recommend using subclasses
of ENVO''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. Format
(one term): termLabel [termID], Format (multiple terms): termLabel [termID]|termLabel
[termID]|termLabel [termID]. Example: Annotating a water sample from the photic
zone in middle of the Atlantic Ocean, consider: oceanic epipelagic zone biome
[ENVO:01000033]. Example: Annotating a sample from the Amazon rainforest consider:
tropical moist broadleaf forest biome [ENVO:01000228]. If needed, request new
terms on the ENVO tracker, identified here: http://www.obofoundry.org/ontology/envo.html'
title: broad-scale environmental context
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
from_schema: https://w3id.org/nmdc/nmdc
rank: 6
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
env_local_scale:
name: env_local_scale
description: 'Report the entity or entities which are in the sample or specimen’s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial
grain than your entry for env_broad_scale. Terms, such as anatomical sites,
from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
title: local environmental context
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
examples:
- value: canopy [ENVO:00000047]
- value: herb and fern layer [ENVO:01000337]
- value: litter layer [ENVO:01000338]
- value: understory [01000335]
- value: shrub layer [ENVO:01000336]
from_schema: https://w3id.org/nmdc/nmdc
rank: 7
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000013
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
env_medium:
name: env_medium
description: 'Report the environmental material(s) immediately surrounding the
sample or specimen at the time of sampling. We recommend using subclasses of
''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
. Terms from other OBO ontologies are permissible as long as they reference
mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
(e.g. a tree, a leaf, a table top).'
title: environmental medium
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
examples:
- value: soil [ENVO:00001998]
from_schema: https://w3id.org/nmdc/nmdc
rank: 8
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
escalator:
name: escalator
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of escalators within the built structure
title: escalator count
examples:
- value: '4'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- escalator count
rank: 103
is_a: core field
slot_uri: MIXS:0000800
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
exp_duct:
name: exp_duct
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The amount of exposed ductwork in the room
title: exposed ductwork
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exposed ductwork
rank: 104
is_a: core field
slot_uri: MIXS:0000144
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
exp_pipe:
name: exp_pipe
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of exposed pipes in the room
title: exposed pipes
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exposed pipes
rank: 105
is_a: core field
slot_uri: MIXS:0000220
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
experimental_factor:
name: experimental_factor
annotations:
expected_value:
tag: expected_value
value: text or EFO and/or OBI
description: Experimental factors are essentially the variable aspects of an experiment
design which can be used to describe an experiment, or set of experiments, in
an increasingly detailed manner. This field accepts ontology terms from Experimental
Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For
a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO;
for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI
title: experimental factor
examples:
- value: time series design [EFO:EFO_0001779]
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- experimental factor
rank: 12
is_a: investigation field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000008
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_section
range: string
ext_door:
name: ext_door
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of exterior doors in the built structure
title: exterior door count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exterior door count
rank: 106
is_a: core field
slot_uri: MIXS:0000170
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
ext_wall_orient:
name: ext_wall_orient
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The orientation of the exterior wall
title: orientations of exterior wall
examples:
- value: northwest
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- orientations of exterior wall
rank: 107
is_a: core field
slot_uri: MIXS:0000817
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ext_wall_orient_enum
ext_window_orient:
name: ext_window_orient
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The compass direction the exterior window of the room is facing
title: orientations of exterior window
examples:
- value: southwest
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- orientations of exterior window
rank: 108
is_a: core field
slot_uri: MIXS:0000818
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ext_window_orient_enum
filter_type:
name: filter_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: A device which removes solid particulates or airborne molecular contaminants
title: filter type
examples:
- value: HEPA
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- filter type
rank: 109
is_a: core field
slot_uri: MIXS:0000765
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: filter_type_enum
fireplace_type:
name: fireplace_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A firebox with chimney
title: fireplace type
examples:
- value: wood burning
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- fireplace type
rank: 110
is_a: core field
string_serialization: '[gas burning|wood burning]'
slot_uri: MIXS:0000802
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
floor_age:
name: floor_age
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: years, weeks, days
occurrence:
tag: occurrence
value: '1'
description: The time period since installment of the carpet or flooring
title: floor age
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor age
rank: 111
is_a: core field
slot_uri: MIXS:0000164
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_area:
name: floor_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The area of the floor space within the room
title: floor area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor area
rank: 112
is_a: core field
slot_uri: MIXS:0000165
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_cond:
name: floor_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the floor at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: floor condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor condition
rank: 113
is_a: core field
slot_uri: MIXS:0000803
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_cond_enum
floor_count:
name: floor_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of floors in the building, including basements and mechanical
penthouse
title: floor count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor count
rank: 114
is_a: core field
slot_uri: MIXS:0000225
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
floor_finish_mat:
name: floor_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The floor covering type; the finished surface that is walked on
title: floor finish material
examples:
- value: carpet
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor finish material
rank: 115
is_a: core field
slot_uri: MIXS:0000804
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_finish_mat_enum
floor_struc:
name: floor_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Refers to the structural elements and subfloor upon which the finish
flooring is installed
title: floor structure
examples:
- value: concrete
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor structure
rank: 116
is_a: core field
slot_uri: MIXS:0000806
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_struc_enum
floor_thermal_mass:
name: floor_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the floor to provide inertia against temperature fluctuations
title: floor thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor thermal mass
rank: 117
is_a: core field
slot_uri: MIXS:0000166
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_water_mold:
name: floor_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew in a room
title: floor signs of water/mold
examples:
- value: ceiling discoloration
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor signs of water/mold
rank: 118
is_a: core field
slot_uri: MIXS:0000805
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_water_mold_enum
freq_clean:
name: freq_clean
annotations:
expected_value:
tag: expected_value
value: enumeration or {text}
occurrence:
tag: occurrence
value: '1'
description: The number of times the sample location is cleaned. Frequency of
cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually.
title: frequency of cleaning
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- frequency of cleaning
rank: 119
is_a: core field
slot_uri: MIXS:0000226
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
freq_cook:
name: freq_cook
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of times a meal is cooked per week
title: frequency of cooking
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- frequency of cooking
rank: 120
is_a: core field
slot_uri: MIXS:0000227
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
furniture:
name: furniture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The types of furniture present in the sampled room
title: furniture
examples:
- value: chair
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- furniture
rank: 121
is_a: core field
slot_uri: MIXS:0000807
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: furniture_enum
gender_restroom:
name: gender_restroom
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The gender type of the restroom
title: gender of restroom
examples:
- value: male
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- gender of restroom
rank: 122
is_a: core field
slot_uri: MIXS:0000808
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: gender_restroom_enum
geo_loc_name:
name: geo_loc_name
annotations:
expected_value:
tag: expected_value
value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
name'
description: The geographical origin of the sample as defined by the country or
sea name followed by specific region name.
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- geographic location (country and/or sea,region)
rank: 4
is_a: environment field
string_serialization: '{text}: {text}, {text}'
slot_uri: MIXS:0000010
multivalued: false
owner: Biosample
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: '^[^:, ][^:]*: [^:, ][^,]*, [^:, ].*$'
hall_count:
name: hall_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The total count of hallways and cooridors in the built structure
title: hallway/corridor count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- hallway/corridor count
rank: 123
is_a: core field
slot_uri: MIXS:0000228
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
handidness:
name: handidness
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The handidness of the individual sampled
title: handidness
examples:
- value: right handedness
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- handidness
rank: 124
is_a: core field
slot_uri: MIXS:0000809
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: handidness_enum
heat_cool_type:
name: heat_cool_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Methods of conditioning or heating a room or building
title: heating and cooling system type
examples:
- value: heat pump
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating and cooling system type
rank: 125
is_a: core field
slot_uri: MIXS:0000766
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: heat_cool_type_enum
heat_deliv_loc:
name: heat_deliv_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The location of heat delivery within the room
title: heating delivery locations
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating delivery locations
rank: 126
is_a: core field
slot_uri: MIXS:0000810
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: heat_deliv_loc_enum
heat_sys_deliv_meth:
name: heat_sys_deliv_meth
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The method by which the heat is delivered through the system
title: heating system delivery method
examples:
- value: radiant
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating system delivery method
rank: 127
is_a: core field
string_serialization: '[conductive|radiant]'
slot_uri: MIXS:0000812
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
heat_system_id:
name: heat_system_id
annotations:
expected_value:
tag: expected_value
value: unique identifier
occurrence:
tag: occurrence
value: '1'
description: The heating system identifier
title: heating system identifier
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating system identifier
rank: 128
is_a: core field
slot_uri: MIXS:0000833
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
height_carper_fiber:
name: height_carper_fiber
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: centimeter
occurrence:
tag: occurrence
value: '1'
description: The average carpet fiber height in the indoor environment
title: height carpet fiber mat
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- height carpet fiber mat
rank: 129
is_a: core field
slot_uri: MIXS:0000167
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
indoor_space:
name: indoor_space
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A distinguishable space within a structure, the purpose for which
discrete areas of a building is used
title: indoor space
examples:
- value: foyer
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- indoor space
rank: 130
is_a: core field
slot_uri: MIXS:0000763
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: indoor_space_enum
indoor_surf:
name: indoor_surf
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Type of indoor surface
title: indoor surface
examples:
- value: wall
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- indoor surface
rank: 131
is_a: core field
slot_uri: MIXS:0000764
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: indoor_surf_enum
inside_lux:
name: inside_lux
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: kilowatt per square metre
occurrence:
tag: occurrence
value: '1'
description: The recorded value at sampling time (power density)
title: inside lux light
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- inside lux light
rank: 132
is_a: core field
slot_uri: MIXS:0000168
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
int_wall_cond:
name: int_wall_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the wall at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: interior wall condition
examples:
- value: damaged
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- interior wall condition
rank: 133
is_a: core field
slot_uri: MIXS:0000813
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: int_wall_cond_enum
last_clean:
name: last_clean
annotations:
expected_value:
tag: expected_value
value: timestamp
occurrence:
tag: occurrence
value: '1'
description: The last time the floor was cleaned (swept, mopped, vacuumed)
title: last time swept/mopped/vacuumed
examples:
- value: 2018-05-11:T14:30Z
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- last time swept/mopped/vacuumed
rank: 134
is_a: core field
slot_uri: MIXS:0000814
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
lat_lon:
name: lat_lon
description: The geographical origin of the sample as defined by latitude and
longitude. The values should be reported in decimal degrees and in WGS84 system
title: geographic location (latitude and longitude)
notes:
- This is currently a required field but it's not clear if this should be required
for human hosts
from_schema: https://w3id.org/nmdc/nmdc
rank: 5
is_a: environment field
string_serialization: '{lat lon}'
slot_uri: MIXS:0000009
multivalued: false
owner: Biosample
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: ^[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?)\s[-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)$
light_type:
name: light_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Application of light to achieve some practical or aesthetic effect.
Lighting includes the use of both artificial light sources such as lamps and
light fixtures, as well as natural illumination by capturing daylight. Can also
include absence of light
title: light type
examples:
- value: desk lamp
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- light type
rank: 135
is_a: core field
slot_uri: MIXS:0000769
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: light_type_enum
max_occup:
name: max_occup
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The maximum amount of people allowed in the indoor environment
title: maximum occupancy
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- maximum occupancy
rank: 136
is_a: core field
slot_uri: MIXS:0000229
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
mech_struc:
name: mech_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: 'mechanical structure: a moving structure'
title: mechanical structure
examples:
- value: elevator
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- mechanical structure
rank: 137
is_a: core field
slot_uri: MIXS:0000815
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: mech_struc_enum
number_pets:
name: number_pets
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of pets residing in the sampled space
title: number of pets
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of pets
rank: 138
is_a: core field
slot_uri: MIXS:0000231
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
number_plants:
name: number_plants
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of plant(s) in the sampling space
title: number of houseplants
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of houseplants
rank: 139
is_a: core field
slot_uri: MIXS:0000230
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
number_resident:
name: number_resident
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of individuals currently occupying in the sampling location
title: number of residents
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of residents
rank: 140
is_a: core field
slot_uri: MIXS:0000232
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
occup_density_samp:
name: occup_density_samp
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Average number of occupants at time of sampling per square footage
title: occupant density at sampling
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupant density at sampling
rank: 141
is_a: core field
slot_uri: MIXS:0000217
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
occup_document:
name: occup_document
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of documentation of occupancy
title: occupancy documentation
examples:
- value: estimate
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupancy documentation
rank: 142
is_a: core field
slot_uri: MIXS:0000816
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: occup_document_enum
occup_samp:
name: occup_samp
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Number of occupants present at time of sample within the given space
title: occupancy at sampling
examples:
- value: '10'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupancy at sampling
rank: 143
is_a: core field
slot_uri: MIXS:0000772
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
organism_count:
name: organism_count
annotations:
expected_value:
tag: expected_value
value: organism name;measurement value;enumeration
preferred_unit:
tag: preferred_unit
value: number of cells per cubic meter, number of cells per milliliter, number
of cells per cubic centimeter
occurrence:
tag: occurrence
value: m
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- organism count
rank: 30
is_a: core field
slot_uri: MIXS:0000103
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_core_section
range: string
pattern: ^([-+]?[0-9]*\.?[0-9]+ +\S.*\|)*([-+]?[0-9]*\.?[0-9]+ +\S.*)$
pres_animal_insect:
name: pres_animal_insect
annotations:
expected_value:
tag: expected_value
value: enumeration;count
occurrence:
tag: occurrence
value: '1'
description: The type and number of animals or insects present in the sampling
space.
title: presence of pets, animals, or insects
examples:
- value: cat;5
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- presence of pets, animals, or insects
rank: 144
is_a: core field
slot_uri: MIXS:0000819
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^(cat|dog|rodent|snake|other);\d+$
quad_pos:
name: quad_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The quadrant position of the sampling room within the building
title: quadrant position
examples:
- value: West side
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- quadrant position
rank: 145
is_a: core field
slot_uri: MIXS:0000820
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: quad_pos_enum
rel_air_humidity:
name: rel_air_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: percentage
occurrence:
tag: occurrence
value: '1'
description: Partial vapor and air pressure, density of the vapor and air, or
by the actual mass of the vapor and air
title: relative air humidity
examples:
- value: 80%
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- relative air humidity
rank: 146
is_a: core field
slot_uri: MIXS:0000121
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
rel_humidity_out:
name: rel_humidity_out
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram of air, kilogram of air
occurrence:
tag: occurrence
value: '1'
description: The recorded outside relative humidity value at the time of sampling
title: outside relative humidity
examples:
- value: 12 per kilogram of air
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- outside relative humidity
rank: 147
is_a: core field
slot_uri: MIXS:0000188
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
rel_samp_loc:
name: rel_samp_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The sampling location within the train car
title: relative sampling location
examples:
- value: center of car
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- relative sampling location
rank: 148
is_a: core field
slot_uri: MIXS:0000821
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: rel_samp_loc_enum
room_air_exch_rate:
name: room_air_exch_rate
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: liter per hour
occurrence:
tag: occurrence
value: '1'
description: The rate at which outside air replaces indoor air in a given space
title: room air exchange rate
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room air exchange rate
rank: 149
is_a: core field
slot_uri: MIXS:0000169
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
room_architec_elem:
name: room_architec_elem
annotations:
expected_value:
tag: expected_value
value: free text
occurrence:
tag: occurrence
value: '1'
description: The unique details and component parts that, together, form the architecture
of a distinguisahable space within a built structure
title: room architectural elements
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room architectural elements
rank: 150
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000233
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_condt:
name: room_condt
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The condition of the room at the time of sampling
title: room condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room condition
rank: 151
is_a: core field
slot_uri: MIXS:0000822
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_condt_enum
room_connected:
name: room_connected
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: List of rooms connected to the sampling room by a doorway
title: rooms connected by a doorway
examples:
- value: office
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms connected by a doorway
rank: 152
is_a: core field
slot_uri: MIXS:0000826
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_connected_enum
room_count:
name: room_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The total count of rooms in the built structure including all room
types
title: room count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room count
rank: 153
is_a: core field
slot_uri: MIXS:0000234
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_dim:
name: room_dim
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: meter
occurrence:
tag: occurrence
value: '1'
description: The length, width and height of sampling room
title: room dimensions
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room dimensions
rank: 154
is_a: core field
string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}'
slot_uri: MIXS:0000192
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_door_dist:
name: room_door_dist
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: meter
occurrence:
tag: occurrence
value: '1'
description: Distance between doors (meters) in the hallway between the sampling
room and adjacent rooms
title: room door distance
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room door distance
rank: 155
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000193
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_door_share:
name: room_door_share
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) sharing a door with the
sampling room
title: rooms that share a door with sampling room
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that share a door with sampling room
rank: 156
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000242
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_hallway:
name: room_hallway
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) located in the same hallway
as sampling room
title: rooms that are on the same hallway
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that are on the same hallway
rank: 157
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000238
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_loc:
name: room_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The position of the room within the building
title: room location in building
examples:
- value: interior room
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room location in building
rank: 158
is_a: core field
slot_uri: MIXS:0000823
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_loc_enum
room_moist_dam_hist:
name: room_moist_dam_hist
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The history of moisture damage or mold in the past 12 months. Number
of events of moisture damage or mold observed
title: room moisture damage or mold history
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room moisture damage or mold history
rank: 159
is_a: core field
slot_uri: MIXS:0000235
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: integer
room_net_area:
name: room_net_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square feet, square meter
occurrence:
tag: occurrence
value: '1'
description: The net floor area of sampling room. Net area excludes wall thicknesses
title: room net area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room net area
rank: 160
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000194
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_occup:
name: room_occup
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Count of room occupancy at time of sampling
title: room occupancy
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room occupancy
rank: 161
is_a: core field
slot_uri: MIXS:0000236
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
room_samp_pos:
name: room_samp_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The horizontal sampling position in the room relative to architectural
elements
title: room sampling position
examples:
- value: south corner
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room sampling position
rank: 162
is_a: core field
slot_uri: MIXS:0000824
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_samp_pos_enum
room_type:
name: room_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The main purpose or activity of the sampling room. A room is any
distinguishable space within a structure
title: room type
examples:
- value: bathroom
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room type
rank: 163
is_a: core field
slot_uri: MIXS:0000825
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_type_enum
room_vol:
name: room_vol
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: cubic feet, cubic meter
occurrence:
tag: occurrence
value: '1'
description: Volume of sampling room
title: room volume
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room volume
rank: 164
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000195
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_wall_share:
name: room_wall_share
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) sharing a wall with the
sampling room
title: rooms that share a wall with sampling room
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that share a wall with sampling room
rank: 165
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000243
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_window_count:
name: room_window_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Number of windows in the room
title: room window count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room window count
rank: 166
is_a: core field
slot_uri: MIXS:0000237
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: integer
samp_floor:
name: samp_floor
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The floor of the building, where the sampling room is located
title: sampling floor
examples:
- value: 4th floor
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling floor
rank: 167
is_a: core field
slot_uri: MIXS:0000828
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: samp_floor_enum
samp_room_id:
name: samp_room_id
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Sampling room number. This ID should be consistent with the designations
on the building floor plans
title: sampling room ID or name
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling room ID or name
rank: 168
is_a: core field
slot_uri: MIXS:0000244
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_sort_meth:
name: samp_sort_meth
annotations:
expected_value:
tag: expected_value
value: description of method
occurrence:
tag: occurrence
value: m
description: Method by which samples are sorted; open face filter collecting total
suspended particles, prefilter to remove particles larger than X micrometers
in diameter, where common values of X would be 10 and 2.5 full size sorting
in a cascade impactor.
title: sample size sorting method
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sample size sorting method
rank: 169
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000216
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_time_out:
name: samp_time_out
annotations:
expected_value:
tag: expected_value
value: time
preferred_unit:
tag: preferred_unit
value: hour
occurrence:
tag: occurrence
value: '1'
description: The recent and long term history of outside sampling
title: sampling time outside
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling time outside
rank: 170
is_a: core field
slot_uri: MIXS:0000196
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_weather:
name: samp_weather
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The weather on the sampling day
title: sampling day weather
examples:
- value: foggy
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling day weather
rank: 171
is_a: core field
slot_uri: MIXS:0000827
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: samp_weather_enum
sample_link:
name: sample_link
description: A unique identifier to assign parent-child, subsample, or sibling
samples. This is relevant when a sample or other material was used to generate
the new sample.
title: sample linkage
notes:
- 'also tempted to include SampIdNewTermsMixin but if len(slot_usage.keys()) >
1 and "placeholder" in slot_usage.keys():AttributeError: ''list'' object has
no attribute ''keys'''
comments:
- 'This field allows multiple entries separated by ; (Examples: Soil collected
from the field will link with the soil used in an incubation. The soil a plant
was grown in links to the plant sample. An original culture sample was transferred
to a new vial and generated a new sample)'
examples:
- value: IGSN:DSJ0284
from_schema: https://w3id.org/nmdc/nmdc
rank: 5
string_serialization: '{text}:{text}'
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
- SampIdNewTermsMixin
slot_group: sample_id_section
range: string
recommended: true
pattern: '[^\:\n\r]+\:[^\:\n\r]+'
season:
name: season
annotations:
expected_value:
tag: expected_value
value: NCIT:C94729
occurrence:
tag: occurrence
value: '1'
description: The season when sampling occurred. Any of the four periods into which
the year is divided by the equinoxes and solstices. This field accepts terms
listed under season (http://purl.obolibrary.org/obo/NCIT_C94729).
title: season
examples:
- value: autumn [NCIT:C94733]
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- season
rank: 172
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000829
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
season_use:
name: season_use
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The seasons the space is occupied
title: seasonal use
examples:
- value: Winter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- seasonal use
rank: 173
is_a: core field
slot_uri: MIXS:0000830
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: season_use_enum
shad_dev_water_mold:
name: shad_dev_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the shading device
title: shading device signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device signs of water/mold
rank: 174
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000834
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_cond:
name: shading_device_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the shading device at the time of sampling
title: shading device condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device condition
rank: 175
is_a: core field
slot_uri: MIXS:0000831
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: shading_device_cond_enum
shading_device_loc:
name: shading_device_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The location of the shading device in relation to the built structure
title: shading device location
examples:
- value: exterior
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device location
rank: 176
is_a: core field
string_serialization: '[exterior|interior]'
slot_uri: MIXS:0000832
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_mat:
name: shading_device_mat
annotations:
expected_value:
tag: expected_value
value: material name
occurrence:
tag: occurrence
value: '1'
description: The material the shading device is composed of
title: shading device material
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device material
rank: 177
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000245
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_type:
name: shading_device_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of shading device
title: shading device type
examples:
- value: slatted aluminum awning
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device type
rank: 178
is_a: core field
slot_uri: MIXS:0000835
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: shading_device_type_enum
size_frac:
name: size_frac
annotations:
expected_value:
tag: expected_value
value: filter size value range
description: Filtering pore size used in sample preparation
title: size fraction selected
examples:
- value: 0-0.22 micrometer
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- size fraction selected
rank: 285
is_a: nucleic acid sequence source field
string_serialization: '{float}-{float} {unit}'
slot_uri: MIXS:0000017
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_core_section
range: string
space_typ_state:
name: space_typ_state
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Customary or normal state of the space
title: space typical state
examples:
- value: typically occupied
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- space typical state
rank: 179
is_a: core field
string_serialization: '[typically occupied|typically unoccupied]'
slot_uri: MIXS:0000770
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
specific:
name: specific
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: 'The building specifications. If design is chosen, indicate phase:
conceptual, schematic, design development, construction documents'
title: specifications
examples:
- value: construction
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- specifications
rank: 180
is_a: core field
slot_uri: MIXS:0000836
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: specific_enum
specific_ecosystem:
name: specific_ecosystem
description: Specific ecosystems represent specific features of the environment
like aphotic zone in an ocean or gastric mucosa within a host digestive system.
Specific ecosystem is in position 5/5 in a GOLD path.
comments:
- Specific ecosystems help to define samples based on very specific characteristics
of an environment under the five-level classification system.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 13
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: SpecificEcosystemEnum
recommended: true
specific_humidity:
name: specific_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram of air, kilogram of air
occurrence:
tag: occurrence
value: '1'
description: The mass of water vapour in a unit mass of moist air, usually expressed
as grams of vapour per kilogram of air, or, in air conditioning, as grains per
pound.
title: specific humidity
examples:
- value: 15 per kilogram of air
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- specific humidity
rank: 181
is_a: core field
slot_uri: MIXS:0000214
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
substructure_type:
name: substructure_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: The substructure or under building is that largely hidden section
of the building which is built off the foundations to the ground floor level
title: substructure type
examples:
- value: basement
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- substructure type
rank: 182
is_a: core field
slot_uri: MIXS:0000767
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: substructure_type_enum
surf_air_cont:
name: surf_air_cont
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Contaminant identified on surface
title: surface-air contaminant
examples:
- value: radon
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface-air contaminant
rank: 183
is_a: core field
slot_uri: MIXS:0000759
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: surf_air_cont_enum
surf_humidity:
name: surf_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: percentage
occurrence:
tag: occurrence
value: '1'
description: 'Surfaces: water activity as a function of air and material moisture'
title: surface humidity
examples:
- value: 10%
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface humidity
rank: 184
is_a: core field
slot_uri: MIXS:0000123
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
surf_material:
name: surf_material
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Surface materials at the point of sampling
title: surface material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface material
rank: 185
is_a: core field
slot_uri: MIXS:0000758
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: surf_material_enum
surf_moisture:
name: surf_moisture
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: parts per million, gram per cubic meter, gram per square meter
occurrence:
tag: occurrence
value: '1'
description: Water held on a surface
title: surface moisture
examples:
- value: 0.01 gram per square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface moisture
rank: 186
is_a: core field
slot_uri: MIXS:0000128
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
surf_moisture_ph:
name: surf_moisture_ph
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: ph measurement of surface
title: surface moisture pH
examples:
- value: '7'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface moisture pH
rank: 187
is_a: core field
slot_uri: MIXS:0000760
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: double
surf_temp:
name: surf_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: Temperature of the surface at the time of sampling
title: surface temperature
examples:
- value: 15 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface temperature
rank: 188
is_a: core field
slot_uri: MIXS:0000125
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
temp:
name: temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
description: Temperature of the sample at the time of sampling.
title: temperature
examples:
- value: 25 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- temperature
rank: 37
is_a: environment field
slot_uri: MIXS:0000113
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
temp_out:
name: temp_out
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The recorded temperature value at sampling time outside
title: temperature outside house
examples:
- value: 5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- temperature outside house
rank: 189
is_a: core field
slot_uri: MIXS:0000197
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
train_line:
name: train_line
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The subway line name
title: train line
examples:
- value: red
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train line
rank: 190
is_a: core field
slot_uri: MIXS:0000837
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_line_enum
train_stat_loc:
name: train_stat_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The train station collection location
title: train station collection location
examples:
- value: forest hills
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train station collection location
rank: 191
is_a: core field
slot_uri: MIXS:0000838
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_stat_loc_enum
train_stop_loc:
name: train_stop_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The train stop collection location
title: train stop collection location
examples:
- value: end
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train stop collection location
rank: 192
is_a: core field
slot_uri: MIXS:0000839
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_stop_loc_enum
typ_occup_density:
name: typ_occup_density
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Customary or normal density of occupants
title: typical occupant density
examples:
- value: '25'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- typical occupant density
rank: 193
is_a: core field
slot_uri: MIXS:0000771
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: double
ventilation_type:
name: ventilation_type
annotations:
expected_value:
tag: expected_value
value: ventilation type name
occurrence:
tag: occurrence
value: '1'
description: Ventilation system used in the sampled premises
title: ventilation type
examples:
- value: Operable windows
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ventilation type
rank: 57
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000756
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
vis_media:
name: vis_media
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building visual media
title: visual media
examples:
- value: 3D scans
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- visual media
rank: 194
is_a: core field
slot_uri: MIXS:0000840
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: vis_media_enum
wall_area:
name: wall_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The total area of the sampled room's walls
title: wall area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall area
rank: 195
is_a: core field
slot_uri: MIXS:0000198
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_const_type:
name: wall_const_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building class of the wall defined by the composition of the
building elements and fire-resistance rating.
title: wall construction type
examples:
- value: fire resistive
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall construction type
rank: 196
is_a: core field
slot_uri: MIXS:0000841
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_const_type_enum
wall_finish_mat:
name: wall_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The material utilized to finish the outer most layer of the wall
title: wall finish material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall finish material
rank: 197
is_a: core field
slot_uri: MIXS:0000842
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_finish_mat_enum
wall_height:
name: wall_height
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: centimeter
occurrence:
tag: occurrence
value: '1'
description: The average height of the walls in the sampled room
title: wall height
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall height
rank: 198
is_a: core field
slot_uri: MIXS:0000221
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_loc:
name: wall_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the wall within the room
title: wall location
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall location
rank: 199
is_a: core field
slot_uri: MIXS:0000843
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_loc_enum
wall_surf_treatment:
name: wall_surf_treatment
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The surface treatment of interior wall
title: wall surface treatment
examples:
- value: paneling
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall surface treatment
rank: 200
is_a: core field
slot_uri: MIXS:0000845
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_surf_treatment_enum
wall_texture:
name: wall_texture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The feel, appearance, or consistency of a wall surface
title: wall texture
examples:
- value: popcorn
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall texture
rank: 201
is_a: core field
slot_uri: MIXS:0000846
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_texture_enum
wall_thermal_mass:
name: wall_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the wall to provide inertia against temperature fluctuations.
Generally this means concrete or concrete block that is either exposed or covered
only with paint
title: wall thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall thermal mass
rank: 202
is_a: core field
slot_uri: MIXS:0000222
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_water_mold:
name: wall_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on a wall
title: wall signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall signs of water/mold
rank: 203
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000844
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
water_feat_size:
name: water_feat_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The size of the water feature
title: water feature size
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- water feature size
rank: 204
is_a: core field
slot_uri: MIXS:0000223
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
water_feat_type:
name: water_feat_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of water feature present within the building being sampled
title: water feature type
examples:
- value: stream
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- water feature type
rank: 205
is_a: core field
slot_uri: MIXS:0000847
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: water_feat_type_enum
weekday:
name: weekday
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The day of the week when sampling occurred
title: weekday
examples:
- value: Sunday
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- weekday
rank: 206
is_a: core field
slot_uri: MIXS:0000848
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: weekday_enum
window_cond:
name: window_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the window at the time of sampling
title: window condition
examples:
- value: rupture
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window condition
rank: 207
is_a: core field
slot_uri: MIXS:0000849
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_cond_enum
window_cover:
name: window_cover
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of window covering
title: window covering
examples:
- value: curtains
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window covering
rank: 208
is_a: core field
slot_uri: MIXS:0000850
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_cover_enum
window_horiz_pos:
name: window_horiz_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The horizontal position of the window on the wall
title: window horizontal position
examples:
- value: middle
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window horizontal position
rank: 209
is_a: core field
slot_uri: MIXS:0000851
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_horiz_pos_enum
window_loc:
name: window_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the window within the room
title: window location
examples:
- value: west
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window location
rank: 210
is_a: core field
slot_uri: MIXS:0000852
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_loc_enum
window_mat:
name: window_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of material used to finish a window
title: window material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window material
rank: 211
is_a: core field
slot_uri: MIXS:0000853
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_mat_enum
window_open_freq:
name: window_open_freq
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of times windows are opened per week
title: window open frequency
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window open frequency
rank: 212
is_a: core field
slot_uri: MIXS:0000246
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_size:
name: window_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: inch, meter
occurrence:
tag: occurrence
value: '1'
description: The window's length and width
title: window area/size
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window area/size
rank: 213
is_a: core field
string_serialization: '{float} {unit} x {float} {unit}'
slot_uri: MIXS:0000224
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_status:
name: window_status
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Defines whether the windows were open or closed during environmental
testing
title: window status
examples:
- value: open
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window status
rank: 214
is_a: core field
string_serialization: '[closed|open]'
slot_uri: MIXS:0000855
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_type:
name: window_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of windows
title: window type
examples:
- value: fixed window
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window type
rank: 215
is_a: core field
slot_uri: MIXS:0000856
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_type_enum
window_vert_pos:
name: window_vert_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The vertical position of the window on the wall
title: window vertical position
examples:
- value: middle
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window vertical position
rank: 216
is_a: core field
slot_uri: MIXS:0000857
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_vert_pos_enum
window_water_mold:
name: window_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the window.
title: window signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window signs of water/mold
rank: 217
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000854
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
horizon_meth:
name: horizon_meth
title: horizon method
oxy_stat_samp:
name: oxy_stat_samp
range: OxyStatSampEnum
Induced
name: BuiltEnvInterface
annotations:
excel_worksheet_name:
tag: excel_worksheet_name
value: built environment
description: built_env dh_interface
title: Built Env
from_schema: https://example.com/nmdc_submission_schema
is_a: DhInterface
mixins:
- DhMultiviewCommonColumnsMixin
- SampIdNewTermsMixin
slot_usage:
abs_air_humidity:
name: abs_air_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram per gram, kilogram per kilogram, kilogram, pound
occurrence:
tag: occurrence
value: '1'
description: Actual mass of water vapor - mh20 - present in the air water vapor
mixture
title: absolute air humidity
examples:
- value: 9 gram per gram
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- absolute air humidity
rank: 61
is_a: core field
slot_uri: MIXS:0000122
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
address:
name: address
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The street name and building number where the sampling occurred.
title: address
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- address
rank: 62
is_a: core field
string_serialization: '{integer}{text}'
slot_uri: MIXS:0000218
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
adj_room:
name: adj_room
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of rooms (room number, room name) immediately adjacent to the
sampling room
title: adjacent rooms
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- adjacent rooms
rank: 63
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000219
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
aero_struc:
name: aero_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Aerospace structures typically consist of thin plates with stiffeners
for the external surfaces, bulkheads and frames to support the shape and fasteners
such as welds, rivets, screws and bolts to hold the components together
title: aerospace structure
examples:
- value: plane
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- aerospace structure
rank: 64
is_a: core field
string_serialization: '[plane|glider]'
slot_uri: MIXS:0000773
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
air_temp:
name: air_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: Temperature of the air at the time of sampling
title: air temperature
examples:
- value: 20 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- air temperature
rank: 65
is_a: core field
slot_uri: MIXS:0000124
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
alt:
name: alt
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Altitude is a term used to identify heights of objects such as airplanes,
space shuttles, rockets, atmospheric balloons and heights of places such as
atmospheric layers and clouds. It is used to measure the height of an object
which is above the earth's surface. In this context, the altitude measurement
is the vertical distance between the earth's surface above sea level and the
sampled position in the air
title: altitude
examples:
- value: 100 meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- altitude
rank: 26
is_a: environment field
slot_uri: MIXS:0000094
multivalued: false
owner: Biosample
domain_of:
- agriculture
- air
- built environment
- core
- food-animal and animal feed
- food-farm environment
- food-food production facility
- food-human foods
- host-associated
- human-associated
- human-gut
- human-oral
- human-skin
- human-vaginal
- hydrocarbon resources-cores
- hydrocarbon resources-fluids_swabs
- microbial mat_biofilm
- miscellaneous natural or artificial environment
- plant-associated
- sediment
- soil
- symbiont-associated
- wastewater_sludge
- water
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HostAssociatedInterface
- MiscEnvsInterface
slot_group: mixs_modified_section
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
amount_light:
name: amount_light
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: lux, lumens per square meter
occurrence:
tag: occurrence
value: '1'
description: The unit of illuminance and luminous emittance, measuring luminous
flux per unit area
title: amount of light
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- amount of light
rank: 66
is_a: core field
slot_uri: MIXS:0000140
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
arch_struc:
name: arch_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: An architectural structure is a human-made, free-standing, immobile
outdoor construction
title: architectural structure
examples:
- value: shed
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- architectural structure
rank: 67
is_a: core field
slot_uri: MIXS:0000774
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: arch_struc_enum
avg_dew_point:
name: avg_dew_point
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The average of dew point measures taken at the beginning of every
hour over a 24 hour period on the sampling day
title: average dew point
examples:
- value: 25.5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average dew point
rank: 68
is_a: core field
slot_uri: MIXS:0000141
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
avg_occup:
name: avg_occup
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Daily average occupancy of room. Indicate the number of person(s)
daily occupying the sampling room.
title: average daily occupancy
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average daily occupancy
rank: 69
is_a: core field
slot_uri: MIXS:0000775
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
avg_temp:
name: avg_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The average of temperatures taken at the beginning of every hour
over a 24 hour period on the sampling day
title: average temperature
examples:
- value: 12.5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average temperature
rank: 70
is_a: core field
slot_uri: MIXS:0000142
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
bathroom_count:
name: bathroom_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of bathrooms in the building
title: bathroom count
examples:
- value: '1'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- bathroom count
rank: 71
is_a: core field
slot_uri: MIXS:0000776
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
bedroom_count:
name: bedroom_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of bedrooms in the building
title: bedroom count
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- bedroom count
rank: 72
is_a: core field
slot_uri: MIXS:0000777
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
build_docs:
name: build_docs
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building design, construction and operation documents
title: design, construction, and operation documents
examples:
- value: maintenance plans
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- design, construction, and operation documents
rank: 73
is_a: core field
slot_uri: MIXS:0000787
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: build_docs_enum
build_occup_type:
name: build_occup_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: The primary function for which a building or discrete part of a building
is intended to be used
title: building occupancy type
examples:
- value: market
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- building occupancy type
rank: 74
is_a: core field
slot_uri: MIXS:0000761
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: build_occup_type_enum
building_setting:
name: building_setting
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A location (geography) where a building is set
title: building setting
examples:
- value: rural
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- building setting
rank: 75
is_a: core field
slot_uri: MIXS:0000768
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: building_setting_enum
built_struc_age:
name: built_struc_age
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: year
occurrence:
tag: occurrence
value: '1'
description: The age of the built structure since construction
title: built structure age
examples:
- value: '15'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure age
rank: 76
is_a: core field
slot_uri: MIXS:0000145
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
built_struc_set:
name: built_struc_set
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The characterization of the location of the built structure as high
or low human density
title: built structure setting
examples:
- value: rural
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure setting
rank: 77
is_a: core field
string_serialization: '[urban|rural]'
slot_uri: MIXS:0000778
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
built_struc_type:
name: built_struc_type
annotations:
expected_value:
tag: expected_value
value: free text
occurrence:
tag: occurrence
value: '1'
description: A physical structure that is a body or assemblage of bodies in space
to form a system capable of supporting loads
title: built structure type
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure type
rank: 78
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000721
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
carb_dioxide:
name: carb_dioxide
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: micromole per liter, parts per million
occurrence:
tag: occurrence
value: '1'
description: Carbon dioxide (gas) amount or concentration at the time of sampling
title: carbon dioxide
examples:
- value: 410 parts per million
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- carbon dioxide
rank: 50
is_a: core field
slot_uri: MIXS:0000097
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_area:
name: ceil_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The area of the ceiling space within the room
title: ceiling area
examples:
- value: 25 square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling area
rank: 79
is_a: core field
slot_uri: MIXS:0000148
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_cond:
name: ceil_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the ceiling at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: ceiling condition
examples:
- value: damaged
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling condition
rank: 80
is_a: core field
slot_uri: MIXS:0000779
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_cond_enum
ceil_finish_mat:
name: ceil_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of material used to finish a ceiling
title: ceiling finish material
examples:
- value: stucco
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling finish material
rank: 81
is_a: core field
slot_uri: MIXS:0000780
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_finish_mat_enum
ceil_struc:
name: ceil_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The construction format of the ceiling
title: ceiling structure
examples:
- value: concrete
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling structure
rank: 82
is_a: core field
string_serialization: '[wood frame|concrete]'
slot_uri: MIXS:0000782
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
ceil_texture:
name: ceil_texture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The feel, appearance, or consistency of a ceiling surface
title: ceiling texture
examples:
- value: popcorn
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling texture
rank: 83
is_a: core field
slot_uri: MIXS:0000783
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_texture_enum
ceil_thermal_mass:
name: ceil_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the ceiling to provide inertia against temperature
fluctuations. Generally this means concrete that is exposed. A metal deck that
supports a concrete slab will act thermally as long as it is exposed to room
air flow
title: ceiling thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling thermal mass
rank: 84
is_a: core field
slot_uri: MIXS:0000143
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_type:
name: ceil_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of ceiling according to the ceiling's appearance or construction
title: ceiling type
examples:
- value: coffered
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling type
rank: 85
is_a: core field
slot_uri: MIXS:0000784
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_type_enum
ceil_water_mold:
name: ceil_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the ceiling
title: ceiling signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling signs of water/mold
rank: 86
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000781
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
collection_date:
name: collection_date
annotations:
expected_value:
tag: expected_value
value: date and time
description: The date of sampling
title: collection date
notes:
- MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only
- Use modified term (amended definition)
examples:
- value: '2021-04-15'
- value: 2021-04
- value: '2021'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- collection date
rank: 3
is_a: environment field
string_serialization: '{date, arbitrary precision}'
slot_uri: MIXS:0000011
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: ^[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?$
cool_syst_id:
name: cool_syst_id
annotations:
expected_value:
tag: expected_value
value: unique identifier
occurrence:
tag: occurrence
value: '1'
description: The cooling system identifier
title: cooling system identifier
examples:
- value: '12345'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- cooling system identifier
rank: 87
is_a: core field
slot_uri: MIXS:0000785
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
date_last_rain:
name: date_last_rain
annotations:
expected_value:
tag: expected_value
value: timestamp
occurrence:
tag: occurrence
value: '1'
description: The date of the last time it rained
title: date last rain
examples:
- value: 2018-05-11:T14:30Z
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- date last rain
rank: 88
is_a: core field
slot_uri: MIXS:0000786
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
depth:
name: depth
annotations:
expected_value:
tag: expected_value
value: measurement value
description: The vertical distance below local surface, e.g. for sediment or soil
samples depth is measured from sediment or soil surface, respectively. Depth
can be reported as an interval for subsurface samples.
title: depth, meters
notes:
- Use modified term
comments:
- All depths must be reported in meters. Provide the numerical portion only.
examples:
- value: 0 - 0.1
- value: '1'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- depth
rank: 9
is_a: environment field
string_serialization: '{float}|{float}-{float}'
slot_uri: MIXS:0000018
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?(\s*-\s*[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?)?$
dew_point:
name: dew_point
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The temperature to which a given parcel of humid air must be cooled,
at constant barometric pressure, for water vapor to condense into water.
title: dew point
examples:
- value: 22 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- dew point
rank: 89
is_a: core field
slot_uri: MIXS:0000129
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
door_comp_type:
name: door_comp_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The composite type of the door
title: door type, composite
examples:
- value: revolving
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, composite
rank: 90
is_a: core field
slot_uri: MIXS:0000795
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_comp_type_enum
door_cond:
name: door_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The phsical condition of the door
title: door condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door condition
rank: 91
is_a: core field
slot_uri: MIXS:0000788
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_cond_enum
door_direct:
name: door_direct
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The direction the door opens
title: door direction of opening
examples:
- value: inward
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door direction of opening
rank: 92
is_a: core field
slot_uri: MIXS:0000789
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_direct_enum
door_loc:
name: door_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the door in the room
title: door location
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door location
rank: 93
is_a: core field
slot_uri: MIXS:0000790
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_loc_enum
door_mat:
name: door_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The material the door is composed of
title: door material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door material
rank: 94
is_a: core field
slot_uri: MIXS:0000791
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_mat_enum
door_move:
name: door_move
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of movement of the door
title: door movement
examples:
- value: swinging
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door movement
rank: 95
is_a: core field
slot_uri: MIXS:0000792
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_move_enum
door_size:
name: door_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The size of the door
title: door area or size
examples:
- value: 2.5 square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door area or size
rank: 96
is_a: core field
slot_uri: MIXS:0000158
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
door_type:
name: door_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of door material
title: door type
examples:
- value: wooden
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type
rank: 97
is_a: core field
slot_uri: MIXS:0000794
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_enum
door_type_metal:
name: door_type_metal
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of metal door
title: door type, metal
examples:
- value: hollow
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, metal
rank: 98
is_a: core field
slot_uri: MIXS:0000796
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_metal_enum
door_type_wood:
name: door_type_wood
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of wood door
title: door type, wood
examples:
- value: battened
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, wood
rank: 99
is_a: core field
slot_uri: MIXS:0000797
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_wood_enum
door_water_mold:
name: door_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on a door
title: door signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door signs of water/mold
rank: 100
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000793
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
drawings:
name: drawings
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The buildings architectural drawings; if design is chosen, indicate
phase-conceptual, schematic, design development, and construction documents
title: drawings
examples:
- value: sketch
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- drawings
rank: 101
is_a: core field
slot_uri: MIXS:0000798
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: drawings_enum
ecosystem:
name: ecosystem
description: An ecosystem is a combination of a physical environment (abiotic
factors) and all the organisms (biotic factors) that interact with this environment.
Ecosystem is in position 1/5 in a GOLD path.
comments:
- The abiotic factors play a profound role on the type and composition of organisms
in a given environment. The GOLD Ecosystem at the top of the five-level classification
system is aimed at capturing the broader environment from which an organism
or environmental sample is collected. The three broad groups under Ecosystem
are Environmental, Host-associated, and Engineered. They represent samples collected
from a natural environment or from another organism or from engineered environments
like bioreactors respectively.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 9
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemEnum
recommended: true
ecosystem_category:
name: ecosystem_category
description: Ecosystem categories represent divisions within the ecosystem based
on specific characteristics of the environment from where an organism or sample
is isolated. Ecosystem category is in position 2/5 in a GOLD path.
comments:
- The Environmental ecosystem (for example) is divided into Air, Aquatic and Terrestrial.
Ecosystem categories for Host-associated samples can be individual hosts or
phyla and for engineered samples it may be manipulated environments like bioreactors,
solid waste etc.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 10
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemCategoryEnum
recommended: true
ecosystem_subtype:
name: ecosystem_subtype
description: Ecosystem subtypes represent further subdivision of Ecosystem types
into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD
path.
comments:
- Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided
(for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in
the Ecosystem subtype category.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 12
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemSubtypeEnum
recommended: true
ecosystem_type:
name: ecosystem_type
description: Ecosystem types represent things having common characteristics within
the Ecosystem Category. These common characteristics based grouping is still
broad but specific to the characteristics of a given environment. Ecosystem
type is in position 3/5 in a GOLD path.
comments:
- The Aquatic ecosystem category (for example) may have ecosystem types like Marine
or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor
air as different Ecosystem Types. In the case of Host-associated samples, ecosystem
type can represent Respiratory system, Digestive system, Roots etc.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 11
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemTypeEnum
recommended: true
elev:
name: elev
description: Elevation of the sampling site is its height above a fixed reference
point, most commonly the mean sea level. Elevation is mainly used when referring
to points on the earth's surface, while altitude is used for points above the
surface, such as an aircraft in flight or a spacecraft in orbit.
title: elevation, meters
comments:
- All elevations must be reported in meters. Provide the numerical portion only.
- Please use https://www.advancedconverter.com/map-tools/find-altitude-by-coordinates,
if needed, to help estimate the elevation based on latitude and longitude coordinates.
examples:
- value: '225'
- value: '0'
- value: '1250'
from_schema: https://w3id.org/nmdc/nmdc
rank: 6
is_a: environment field
slot_uri: MIXS:0000093
multivalued: false
owner: Biosample
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: float
required: true
elevator:
name: elevator
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of elevators within the built structure
title: elevator count
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- elevator count
rank: 102
is_a: core field
slot_uri: MIXS:0000799
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
env_broad_scale:
name: env_broad_scale
description: 'In this field, report which major environmental system your sample
or specimen came from. The systems identified should have a coarse spatial grain,
to provide the general environmental context of where the sampling was done
(e.g. were you in the desert or a rainforest?). We recommend using subclasses
of ENVO''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. Format
(one term): termLabel [termID], Format (multiple terms): termLabel [termID]|termLabel
[termID]|termLabel [termID]. Example: Annotating a water sample from the photic
zone in middle of the Atlantic Ocean, consider: oceanic epipelagic zone biome
[ENVO:01000033]. Example: Annotating a sample from the Amazon rainforest consider:
tropical moist broadleaf forest biome [ENVO:01000228]. If needed, request new
terms on the ENVO tracker, identified here: http://www.obofoundry.org/ontology/envo.html'
title: broad-scale environmental context
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
from_schema: https://w3id.org/nmdc/nmdc
rank: 6
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
env_local_scale:
name: env_local_scale
description: 'Report the entity or entities which are in the sample or specimen’s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial
grain than your entry for env_broad_scale. Terms, such as anatomical sites,
from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
title: local environmental context
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
examples:
- value: canopy [ENVO:00000047]
- value: herb and fern layer [ENVO:01000337]
- value: litter layer [ENVO:01000338]
- value: understory [01000335]
- value: shrub layer [ENVO:01000336]
from_schema: https://w3id.org/nmdc/nmdc
rank: 7
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000013
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
env_medium:
name: env_medium
description: 'Report the environmental material(s) immediately surrounding the
sample or specimen at the time of sampling. We recommend using subclasses of
''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
. Terms from other OBO ontologies are permissible as long as they reference
mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
(e.g. a tree, a leaf, a table top).'
title: environmental medium
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
examples:
- value: soil [ENVO:00001998]
from_schema: https://w3id.org/nmdc/nmdc
rank: 8
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
escalator:
name: escalator
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of escalators within the built structure
title: escalator count
examples:
- value: '4'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- escalator count
rank: 103
is_a: core field
slot_uri: MIXS:0000800
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
exp_duct:
name: exp_duct
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The amount of exposed ductwork in the room
title: exposed ductwork
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exposed ductwork
rank: 104
is_a: core field
slot_uri: MIXS:0000144
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
exp_pipe:
name: exp_pipe
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of exposed pipes in the room
title: exposed pipes
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exposed pipes
rank: 105
is_a: core field
slot_uri: MIXS:0000220
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
experimental_factor:
name: experimental_factor
annotations:
expected_value:
tag: expected_value
value: text or EFO and/or OBI
description: Experimental factors are essentially the variable aspects of an experiment
design which can be used to describe an experiment, or set of experiments, in
an increasingly detailed manner. This field accepts ontology terms from Experimental
Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For
a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO;
for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI
title: experimental factor
examples:
- value: time series design [EFO:EFO_0001779]
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- experimental factor
rank: 12
is_a: investigation field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000008
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_section
range: string
ext_door:
name: ext_door
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of exterior doors in the built structure
title: exterior door count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exterior door count
rank: 106
is_a: core field
slot_uri: MIXS:0000170
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
ext_wall_orient:
name: ext_wall_orient
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The orientation of the exterior wall
title: orientations of exterior wall
examples:
- value: northwest
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- orientations of exterior wall
rank: 107
is_a: core field
slot_uri: MIXS:0000817
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ext_wall_orient_enum
ext_window_orient:
name: ext_window_orient
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The compass direction the exterior window of the room is facing
title: orientations of exterior window
examples:
- value: southwest
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- orientations of exterior window
rank: 108
is_a: core field
slot_uri: MIXS:0000818
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ext_window_orient_enum
filter_type:
name: filter_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: A device which removes solid particulates or airborne molecular contaminants
title: filter type
examples:
- value: HEPA
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- filter type
rank: 109
is_a: core field
slot_uri: MIXS:0000765
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: filter_type_enum
fireplace_type:
name: fireplace_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A firebox with chimney
title: fireplace type
examples:
- value: wood burning
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- fireplace type
rank: 110
is_a: core field
string_serialization: '[gas burning|wood burning]'
slot_uri: MIXS:0000802
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
floor_age:
name: floor_age
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: years, weeks, days
occurrence:
tag: occurrence
value: '1'
description: The time period since installment of the carpet or flooring
title: floor age
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor age
rank: 111
is_a: core field
slot_uri: MIXS:0000164
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_area:
name: floor_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The area of the floor space within the room
title: floor area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor area
rank: 112
is_a: core field
slot_uri: MIXS:0000165
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_cond:
name: floor_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the floor at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: floor condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor condition
rank: 113
is_a: core field
slot_uri: MIXS:0000803
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_cond_enum
floor_count:
name: floor_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of floors in the building, including basements and mechanical
penthouse
title: floor count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor count
rank: 114
is_a: core field
slot_uri: MIXS:0000225
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
floor_finish_mat:
name: floor_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The floor covering type; the finished surface that is walked on
title: floor finish material
examples:
- value: carpet
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor finish material
rank: 115
is_a: core field
slot_uri: MIXS:0000804
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_finish_mat_enum
floor_struc:
name: floor_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Refers to the structural elements and subfloor upon which the finish
flooring is installed
title: floor structure
examples:
- value: concrete
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor structure
rank: 116
is_a: core field
slot_uri: MIXS:0000806
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_struc_enum
floor_thermal_mass:
name: floor_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the floor to provide inertia against temperature fluctuations
title: floor thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor thermal mass
rank: 117
is_a: core field
slot_uri: MIXS:0000166
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_water_mold:
name: floor_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew in a room
title: floor signs of water/mold
examples:
- value: ceiling discoloration
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor signs of water/mold
rank: 118
is_a: core field
slot_uri: MIXS:0000805
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_water_mold_enum
freq_clean:
name: freq_clean
annotations:
expected_value:
tag: expected_value
value: enumeration or {text}
occurrence:
tag: occurrence
value: '1'
description: The number of times the sample location is cleaned. Frequency of
cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually.
title: frequency of cleaning
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- frequency of cleaning
rank: 119
is_a: core field
slot_uri: MIXS:0000226
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
freq_cook:
name: freq_cook
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of times a meal is cooked per week
title: frequency of cooking
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- frequency of cooking
rank: 120
is_a: core field
slot_uri: MIXS:0000227
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
furniture:
name: furniture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The types of furniture present in the sampled room
title: furniture
examples:
- value: chair
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- furniture
rank: 121
is_a: core field
slot_uri: MIXS:0000807
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: furniture_enum
gender_restroom:
name: gender_restroom
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The gender type of the restroom
title: gender of restroom
examples:
- value: male
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- gender of restroom
rank: 122
is_a: core field
slot_uri: MIXS:0000808
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: gender_restroom_enum
geo_loc_name:
name: geo_loc_name
annotations:
expected_value:
tag: expected_value
value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
name'
description: The geographical origin of the sample as defined by the country or
sea name followed by specific region name.
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- geographic location (country and/or sea,region)
rank: 4
is_a: environment field
string_serialization: '{text}: {text}, {text}'
slot_uri: MIXS:0000010
multivalued: false
owner: Biosample
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: '^[^:, ][^:]*: [^:, ][^,]*, [^:, ].*$'
hall_count:
name: hall_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The total count of hallways and cooridors in the built structure
title: hallway/corridor count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- hallway/corridor count
rank: 123
is_a: core field
slot_uri: MIXS:0000228
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
handidness:
name: handidness
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The handidness of the individual sampled
title: handidness
examples:
- value: right handedness
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- handidness
rank: 124
is_a: core field
slot_uri: MIXS:0000809
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: handidness_enum
heat_cool_type:
name: heat_cool_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Methods of conditioning or heating a room or building
title: heating and cooling system type
examples:
- value: heat pump
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating and cooling system type
rank: 125
is_a: core field
slot_uri: MIXS:0000766
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: heat_cool_type_enum
heat_deliv_loc:
name: heat_deliv_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The location of heat delivery within the room
title: heating delivery locations
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating delivery locations
rank: 126
is_a: core field
slot_uri: MIXS:0000810
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: heat_deliv_loc_enum
heat_sys_deliv_meth:
name: heat_sys_deliv_meth
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The method by which the heat is delivered through the system
title: heating system delivery method
examples:
- value: radiant
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating system delivery method
rank: 127
is_a: core field
string_serialization: '[conductive|radiant]'
slot_uri: MIXS:0000812
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
heat_system_id:
name: heat_system_id
annotations:
expected_value:
tag: expected_value
value: unique identifier
occurrence:
tag: occurrence
value: '1'
description: The heating system identifier
title: heating system identifier
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating system identifier
rank: 128
is_a: core field
slot_uri: MIXS:0000833
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
height_carper_fiber:
name: height_carper_fiber
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: centimeter
occurrence:
tag: occurrence
value: '1'
description: The average carpet fiber height in the indoor environment
title: height carpet fiber mat
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- height carpet fiber mat
rank: 129
is_a: core field
slot_uri: MIXS:0000167
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
indoor_space:
name: indoor_space
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A distinguishable space within a structure, the purpose for which
discrete areas of a building is used
title: indoor space
examples:
- value: foyer
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- indoor space
rank: 130
is_a: core field
slot_uri: MIXS:0000763
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: indoor_space_enum
indoor_surf:
name: indoor_surf
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Type of indoor surface
title: indoor surface
examples:
- value: wall
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- indoor surface
rank: 131
is_a: core field
slot_uri: MIXS:0000764
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: indoor_surf_enum
inside_lux:
name: inside_lux
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: kilowatt per square metre
occurrence:
tag: occurrence
value: '1'
description: The recorded value at sampling time (power density)
title: inside lux light
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- inside lux light
rank: 132
is_a: core field
slot_uri: MIXS:0000168
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
int_wall_cond:
name: int_wall_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the wall at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: interior wall condition
examples:
- value: damaged
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- interior wall condition
rank: 133
is_a: core field
slot_uri: MIXS:0000813
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: int_wall_cond_enum
last_clean:
name: last_clean
annotations:
expected_value:
tag: expected_value
value: timestamp
occurrence:
tag: occurrence
value: '1'
description: The last time the floor was cleaned (swept, mopped, vacuumed)
title: last time swept/mopped/vacuumed
examples:
- value: 2018-05-11:T14:30Z
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- last time swept/mopped/vacuumed
rank: 134
is_a: core field
slot_uri: MIXS:0000814
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
lat_lon:
name: lat_lon
description: The geographical origin of the sample as defined by latitude and
longitude. The values should be reported in decimal degrees and in WGS84 system
title: geographic location (latitude and longitude)
notes:
- This is currently a required field but it's not clear if this should be required
for human hosts
from_schema: https://w3id.org/nmdc/nmdc
rank: 5
is_a: environment field
string_serialization: '{lat lon}'
slot_uri: MIXS:0000009
multivalued: false
owner: Biosample
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: ^[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?)\s[-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)$
light_type:
name: light_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Application of light to achieve some practical or aesthetic effect.
Lighting includes the use of both artificial light sources such as lamps and
light fixtures, as well as natural illumination by capturing daylight. Can also
include absence of light
title: light type
examples:
- value: desk lamp
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- light type
rank: 135
is_a: core field
slot_uri: MIXS:0000769
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: light_type_enum
max_occup:
name: max_occup
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The maximum amount of people allowed in the indoor environment
title: maximum occupancy
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- maximum occupancy
rank: 136
is_a: core field
slot_uri: MIXS:0000229
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
mech_struc:
name: mech_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: 'mechanical structure: a moving structure'
title: mechanical structure
examples:
- value: elevator
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- mechanical structure
rank: 137
is_a: core field
slot_uri: MIXS:0000815
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: mech_struc_enum
number_pets:
name: number_pets
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of pets residing in the sampled space
title: number of pets
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of pets
rank: 138
is_a: core field
slot_uri: MIXS:0000231
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
number_plants:
name: number_plants
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of plant(s) in the sampling space
title: number of houseplants
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of houseplants
rank: 139
is_a: core field
slot_uri: MIXS:0000230
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
number_resident:
name: number_resident
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of individuals currently occupying in the sampling location
title: number of residents
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of residents
rank: 140
is_a: core field
slot_uri: MIXS:0000232
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
occup_density_samp:
name: occup_density_samp
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Average number of occupants at time of sampling per square footage
title: occupant density at sampling
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupant density at sampling
rank: 141
is_a: core field
slot_uri: MIXS:0000217
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
occup_document:
name: occup_document
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of documentation of occupancy
title: occupancy documentation
examples:
- value: estimate
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupancy documentation
rank: 142
is_a: core field
slot_uri: MIXS:0000816
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: occup_document_enum
occup_samp:
name: occup_samp
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Number of occupants present at time of sample within the given space
title: occupancy at sampling
examples:
- value: '10'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupancy at sampling
rank: 143
is_a: core field
slot_uri: MIXS:0000772
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
organism_count:
name: organism_count
annotations:
expected_value:
tag: expected_value
value: organism name;measurement value;enumeration
preferred_unit:
tag: preferred_unit
value: number of cells per cubic meter, number of cells per milliliter, number
of cells per cubic centimeter
occurrence:
tag: occurrence
value: m
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- organism count
rank: 30
is_a: core field
slot_uri: MIXS:0000103
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_core_section
range: string
pattern: ^([-+]?[0-9]*\.?[0-9]+ +\S.*\|)*([-+]?[0-9]*\.?[0-9]+ +\S.*)$
pres_animal_insect:
name: pres_animal_insect
annotations:
expected_value:
tag: expected_value
value: enumeration;count
occurrence:
tag: occurrence
value: '1'
description: The type and number of animals or insects present in the sampling
space.
title: presence of pets, animals, or insects
examples:
- value: cat;5
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- presence of pets, animals, or insects
rank: 144
is_a: core field
slot_uri: MIXS:0000819
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^(cat|dog|rodent|snake|other);\d+$
quad_pos:
name: quad_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The quadrant position of the sampling room within the building
title: quadrant position
examples:
- value: West side
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- quadrant position
rank: 145
is_a: core field
slot_uri: MIXS:0000820
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: quad_pos_enum
rel_air_humidity:
name: rel_air_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: percentage
occurrence:
tag: occurrence
value: '1'
description: Partial vapor and air pressure, density of the vapor and air, or
by the actual mass of the vapor and air
title: relative air humidity
examples:
- value: 80%
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- relative air humidity
rank: 146
is_a: core field
slot_uri: MIXS:0000121
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
rel_humidity_out:
name: rel_humidity_out
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram of air, kilogram of air
occurrence:
tag: occurrence
value: '1'
description: The recorded outside relative humidity value at the time of sampling
title: outside relative humidity
examples:
- value: 12 per kilogram of air
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- outside relative humidity
rank: 147
is_a: core field
slot_uri: MIXS:0000188
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
rel_samp_loc:
name: rel_samp_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The sampling location within the train car
title: relative sampling location
examples:
- value: center of car
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- relative sampling location
rank: 148
is_a: core field
slot_uri: MIXS:0000821
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: rel_samp_loc_enum
room_air_exch_rate:
name: room_air_exch_rate
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: liter per hour
occurrence:
tag: occurrence
value: '1'
description: The rate at which outside air replaces indoor air in a given space
title: room air exchange rate
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room air exchange rate
rank: 149
is_a: core field
slot_uri: MIXS:0000169
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
room_architec_elem:
name: room_architec_elem
annotations:
expected_value:
tag: expected_value
value: free text
occurrence:
tag: occurrence
value: '1'
description: The unique details and component parts that, together, form the architecture
of a distinguisahable space within a built structure
title: room architectural elements
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room architectural elements
rank: 150
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000233
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_condt:
name: room_condt
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The condition of the room at the time of sampling
title: room condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room condition
rank: 151
is_a: core field
slot_uri: MIXS:0000822
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_condt_enum
room_connected:
name: room_connected
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: List of rooms connected to the sampling room by a doorway
title: rooms connected by a doorway
examples:
- value: office
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms connected by a doorway
rank: 152
is_a: core field
slot_uri: MIXS:0000826
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_connected_enum
room_count:
name: room_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The total count of rooms in the built structure including all room
types
title: room count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room count
rank: 153
is_a: core field
slot_uri: MIXS:0000234
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_dim:
name: room_dim
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: meter
occurrence:
tag: occurrence
value: '1'
description: The length, width and height of sampling room
title: room dimensions
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room dimensions
rank: 154
is_a: core field
string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}'
slot_uri: MIXS:0000192
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_door_dist:
name: room_door_dist
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: meter
occurrence:
tag: occurrence
value: '1'
description: Distance between doors (meters) in the hallway between the sampling
room and adjacent rooms
title: room door distance
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room door distance
rank: 155
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000193
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_door_share:
name: room_door_share
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) sharing a door with the
sampling room
title: rooms that share a door with sampling room
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that share a door with sampling room
rank: 156
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000242
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_hallway:
name: room_hallway
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) located in the same hallway
as sampling room
title: rooms that are on the same hallway
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that are on the same hallway
rank: 157
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000238
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_loc:
name: room_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The position of the room within the building
title: room location in building
examples:
- value: interior room
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room location in building
rank: 158
is_a: core field
slot_uri: MIXS:0000823
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_loc_enum
room_moist_dam_hist:
name: room_moist_dam_hist
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The history of moisture damage or mold in the past 12 months. Number
of events of moisture damage or mold observed
title: room moisture damage or mold history
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room moisture damage or mold history
rank: 159
is_a: core field
slot_uri: MIXS:0000235
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: integer
room_net_area:
name: room_net_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square feet, square meter
occurrence:
tag: occurrence
value: '1'
description: The net floor area of sampling room. Net area excludes wall thicknesses
title: room net area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room net area
rank: 160
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000194
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_occup:
name: room_occup
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Count of room occupancy at time of sampling
title: room occupancy
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room occupancy
rank: 161
is_a: core field
slot_uri: MIXS:0000236
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
room_samp_pos:
name: room_samp_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The horizontal sampling position in the room relative to architectural
elements
title: room sampling position
examples:
- value: south corner
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room sampling position
rank: 162
is_a: core field
slot_uri: MIXS:0000824
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_samp_pos_enum
room_type:
name: room_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The main purpose or activity of the sampling room. A room is any
distinguishable space within a structure
title: room type
examples:
- value: bathroom
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room type
rank: 163
is_a: core field
slot_uri: MIXS:0000825
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_type_enum
room_vol:
name: room_vol
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: cubic feet, cubic meter
occurrence:
tag: occurrence
value: '1'
description: Volume of sampling room
title: room volume
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room volume
rank: 164
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000195
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_wall_share:
name: room_wall_share
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) sharing a wall with the
sampling room
title: rooms that share a wall with sampling room
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that share a wall with sampling room
rank: 165
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000243
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_window_count:
name: room_window_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Number of windows in the room
title: room window count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room window count
rank: 166
is_a: core field
slot_uri: MIXS:0000237
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: integer
samp_floor:
name: samp_floor
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The floor of the building, where the sampling room is located
title: sampling floor
examples:
- value: 4th floor
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling floor
rank: 167
is_a: core field
slot_uri: MIXS:0000828
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: samp_floor_enum
samp_room_id:
name: samp_room_id
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Sampling room number. This ID should be consistent with the designations
on the building floor plans
title: sampling room ID or name
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling room ID or name
rank: 168
is_a: core field
slot_uri: MIXS:0000244
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_sort_meth:
name: samp_sort_meth
annotations:
expected_value:
tag: expected_value
value: description of method
occurrence:
tag: occurrence
value: m
description: Method by which samples are sorted; open face filter collecting total
suspended particles, prefilter to remove particles larger than X micrometers
in diameter, where common values of X would be 10 and 2.5 full size sorting
in a cascade impactor.
title: sample size sorting method
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sample size sorting method
rank: 169
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000216
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_time_out:
name: samp_time_out
annotations:
expected_value:
tag: expected_value
value: time
preferred_unit:
tag: preferred_unit
value: hour
occurrence:
tag: occurrence
value: '1'
description: The recent and long term history of outside sampling
title: sampling time outside
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling time outside
rank: 170
is_a: core field
slot_uri: MIXS:0000196
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_weather:
name: samp_weather
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The weather on the sampling day
title: sampling day weather
examples:
- value: foggy
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling day weather
rank: 171
is_a: core field
slot_uri: MIXS:0000827
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: samp_weather_enum
sample_link:
name: sample_link
description: A unique identifier to assign parent-child, subsample, or sibling
samples. This is relevant when a sample or other material was used to generate
the new sample.
title: sample linkage
notes:
- 'also tempted to include SampIdNewTermsMixin but if len(slot_usage.keys()) >
1 and "placeholder" in slot_usage.keys():AttributeError: ''list'' object has
no attribute ''keys'''
comments:
- 'This field allows multiple entries separated by ; (Examples: Soil collected
from the field will link with the soil used in an incubation. The soil a plant
was grown in links to the plant sample. An original culture sample was transferred
to a new vial and generated a new sample)'
examples:
- value: IGSN:DSJ0284
from_schema: https://w3id.org/nmdc/nmdc
rank: 5
string_serialization: '{text}:{text}'
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
- SampIdNewTermsMixin
slot_group: sample_id_section
range: string
recommended: true
pattern: '[^\:\n\r]+\:[^\:\n\r]+'
season:
name: season
annotations:
expected_value:
tag: expected_value
value: NCIT:C94729
occurrence:
tag: occurrence
value: '1'
description: The season when sampling occurred. Any of the four periods into which
the year is divided by the equinoxes and solstices. This field accepts terms
listed under season (http://purl.obolibrary.org/obo/NCIT_C94729).
title: season
examples:
- value: autumn [NCIT:C94733]
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- season
rank: 172
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000829
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
season_use:
name: season_use
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The seasons the space is occupied
title: seasonal use
examples:
- value: Winter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- seasonal use
rank: 173
is_a: core field
slot_uri: MIXS:0000830
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: season_use_enum
shad_dev_water_mold:
name: shad_dev_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the shading device
title: shading device signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device signs of water/mold
rank: 174
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000834
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_cond:
name: shading_device_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the shading device at the time of sampling
title: shading device condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device condition
rank: 175
is_a: core field
slot_uri: MIXS:0000831
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: shading_device_cond_enum
shading_device_loc:
name: shading_device_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The location of the shading device in relation to the built structure
title: shading device location
examples:
- value: exterior
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device location
rank: 176
is_a: core field
string_serialization: '[exterior|interior]'
slot_uri: MIXS:0000832
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_mat:
name: shading_device_mat
annotations:
expected_value:
tag: expected_value
value: material name
occurrence:
tag: occurrence
value: '1'
description: The material the shading device is composed of
title: shading device material
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device material
rank: 177
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000245
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_type:
name: shading_device_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of shading device
title: shading device type
examples:
- value: slatted aluminum awning
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device type
rank: 178
is_a: core field
slot_uri: MIXS:0000835
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: shading_device_type_enum
size_frac:
name: size_frac
annotations:
expected_value:
tag: expected_value
value: filter size value range
description: Filtering pore size used in sample preparation
title: size fraction selected
examples:
- value: 0-0.22 micrometer
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- size fraction selected
rank: 285
is_a: nucleic acid sequence source field
string_serialization: '{float}-{float} {unit}'
slot_uri: MIXS:0000017
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_core_section
range: string
space_typ_state:
name: space_typ_state
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Customary or normal state of the space
title: space typical state
examples:
- value: typically occupied
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- space typical state
rank: 179
is_a: core field
string_serialization: '[typically occupied|typically unoccupied]'
slot_uri: MIXS:0000770
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
specific:
name: specific
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: 'The building specifications. If design is chosen, indicate phase:
conceptual, schematic, design development, construction documents'
title: specifications
examples:
- value: construction
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- specifications
rank: 180
is_a: core field
slot_uri: MIXS:0000836
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: specific_enum
specific_ecosystem:
name: specific_ecosystem
description: Specific ecosystems represent specific features of the environment
like aphotic zone in an ocean or gastric mucosa within a host digestive system.
Specific ecosystem is in position 5/5 in a GOLD path.
comments:
- Specific ecosystems help to define samples based on very specific characteristics
of an environment under the five-level classification system.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 13
is_a: gold_path_field
owner: Biosample
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: SpecificEcosystemEnum
recommended: true
specific_humidity:
name: specific_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram of air, kilogram of air
occurrence:
tag: occurrence
value: '1'
description: The mass of water vapour in a unit mass of moist air, usually expressed
as grams of vapour per kilogram of air, or, in air conditioning, as grains per
pound.
title: specific humidity
examples:
- value: 15 per kilogram of air
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- specific humidity
rank: 181
is_a: core field
slot_uri: MIXS:0000214
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
substructure_type:
name: substructure_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: The substructure or under building is that largely hidden section
of the building which is built off the foundations to the ground floor level
title: substructure type
examples:
- value: basement
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- substructure type
rank: 182
is_a: core field
slot_uri: MIXS:0000767
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: substructure_type_enum
surf_air_cont:
name: surf_air_cont
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Contaminant identified on surface
title: surface-air contaminant
examples:
- value: radon
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface-air contaminant
rank: 183
is_a: core field
slot_uri: MIXS:0000759
multivalued: true
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: surf_air_cont_enum
surf_humidity:
name: surf_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: percentage
occurrence:
tag: occurrence
value: '1'
description: 'Surfaces: water activity as a function of air and material moisture'
title: surface humidity
examples:
- value: 10%
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface humidity
rank: 184
is_a: core field
slot_uri: MIXS:0000123
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
surf_material:
name: surf_material
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Surface materials at the point of sampling
title: surface material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface material
rank: 185
is_a: core field
slot_uri: MIXS:0000758
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: surf_material_enum
surf_moisture:
name: surf_moisture
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: parts per million, gram per cubic meter, gram per square meter
occurrence:
tag: occurrence
value: '1'
description: Water held on a surface
title: surface moisture
examples:
- value: 0.01 gram per square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface moisture
rank: 186
is_a: core field
slot_uri: MIXS:0000128
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
surf_moisture_ph:
name: surf_moisture_ph
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: ph measurement of surface
title: surface moisture pH
examples:
- value: '7'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface moisture pH
rank: 187
is_a: core field
slot_uri: MIXS:0000760
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: double
surf_temp:
name: surf_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: Temperature of the surface at the time of sampling
title: surface temperature
examples:
- value: 15 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface temperature
rank: 188
is_a: core field
slot_uri: MIXS:0000125
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
temp:
name: temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
description: Temperature of the sample at the time of sampling.
title: temperature
examples:
- value: 25 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- temperature
rank: 37
is_a: environment field
slot_uri: MIXS:0000113
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
temp_out:
name: temp_out
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The recorded temperature value at sampling time outside
title: temperature outside house
examples:
- value: 5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- temperature outside house
rank: 189
is_a: core field
slot_uri: MIXS:0000197
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
train_line:
name: train_line
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The subway line name
title: train line
examples:
- value: red
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train line
rank: 190
is_a: core field
slot_uri: MIXS:0000837
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_line_enum
train_stat_loc:
name: train_stat_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The train station collection location
title: train station collection location
examples:
- value: forest hills
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train station collection location
rank: 191
is_a: core field
slot_uri: MIXS:0000838
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_stat_loc_enum
train_stop_loc:
name: train_stop_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The train stop collection location
title: train stop collection location
examples:
- value: end
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train stop collection location
rank: 192
is_a: core field
slot_uri: MIXS:0000839
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_stop_loc_enum
typ_occup_density:
name: typ_occup_density
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Customary or normal density of occupants
title: typical occupant density
examples:
- value: '25'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- typical occupant density
rank: 193
is_a: core field
slot_uri: MIXS:0000771
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: double
ventilation_type:
name: ventilation_type
annotations:
expected_value:
tag: expected_value
value: ventilation type name
occurrence:
tag: occurrence
value: '1'
description: Ventilation system used in the sampled premises
title: ventilation type
examples:
- value: Operable windows
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ventilation type
rank: 57
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000756
multivalued: false
owner: Biosample
domain_of:
- Biosample
- AirInterface
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
vis_media:
name: vis_media
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building visual media
title: visual media
examples:
- value: 3D scans
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- visual media
rank: 194
is_a: core field
slot_uri: MIXS:0000840
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: vis_media_enum
wall_area:
name: wall_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The total area of the sampled room's walls
title: wall area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall area
rank: 195
is_a: core field
slot_uri: MIXS:0000198
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_const_type:
name: wall_const_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building class of the wall defined by the composition of the
building elements and fire-resistance rating.
title: wall construction type
examples:
- value: fire resistive
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall construction type
rank: 196
is_a: core field
slot_uri: MIXS:0000841
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_const_type_enum
wall_finish_mat:
name: wall_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The material utilized to finish the outer most layer of the wall
title: wall finish material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall finish material
rank: 197
is_a: core field
slot_uri: MIXS:0000842
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_finish_mat_enum
wall_height:
name: wall_height
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: centimeter
occurrence:
tag: occurrence
value: '1'
description: The average height of the walls in the sampled room
title: wall height
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall height
rank: 198
is_a: core field
slot_uri: MIXS:0000221
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_loc:
name: wall_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the wall within the room
title: wall location
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall location
rank: 199
is_a: core field
slot_uri: MIXS:0000843
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_loc_enum
wall_surf_treatment:
name: wall_surf_treatment
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The surface treatment of interior wall
title: wall surface treatment
examples:
- value: paneling
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall surface treatment
rank: 200
is_a: core field
slot_uri: MIXS:0000845
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_surf_treatment_enum
wall_texture:
name: wall_texture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The feel, appearance, or consistency of a wall surface
title: wall texture
examples:
- value: popcorn
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall texture
rank: 201
is_a: core field
slot_uri: MIXS:0000846
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_texture_enum
wall_thermal_mass:
name: wall_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the wall to provide inertia against temperature fluctuations.
Generally this means concrete or concrete block that is either exposed or covered
only with paint
title: wall thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall thermal mass
rank: 202
is_a: core field
slot_uri: MIXS:0000222
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_water_mold:
name: wall_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on a wall
title: wall signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall signs of water/mold
rank: 203
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000844
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
water_feat_size:
name: water_feat_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The size of the water feature
title: water feature size
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- water feature size
rank: 204
is_a: core field
slot_uri: MIXS:0000223
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
water_feat_type:
name: water_feat_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of water feature present within the building being sampled
title: water feature type
examples:
- value: stream
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- water feature type
rank: 205
is_a: core field
slot_uri: MIXS:0000847
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: water_feat_type_enum
weekday:
name: weekday
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The day of the week when sampling occurred
title: weekday
examples:
- value: Sunday
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- weekday
rank: 206
is_a: core field
slot_uri: MIXS:0000848
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: weekday_enum
window_cond:
name: window_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the window at the time of sampling
title: window condition
examples:
- value: rupture
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window condition
rank: 207
is_a: core field
slot_uri: MIXS:0000849
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_cond_enum
window_cover:
name: window_cover
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of window covering
title: window covering
examples:
- value: curtains
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window covering
rank: 208
is_a: core field
slot_uri: MIXS:0000850
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_cover_enum
window_horiz_pos:
name: window_horiz_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The horizontal position of the window on the wall
title: window horizontal position
examples:
- value: middle
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window horizontal position
rank: 209
is_a: core field
slot_uri: MIXS:0000851
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_horiz_pos_enum
window_loc:
name: window_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the window within the room
title: window location
examples:
- value: west
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window location
rank: 210
is_a: core field
slot_uri: MIXS:0000852
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_loc_enum
window_mat:
name: window_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of material used to finish a window
title: window material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window material
rank: 211
is_a: core field
slot_uri: MIXS:0000853
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_mat_enum
window_open_freq:
name: window_open_freq
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of times windows are opened per week
title: window open frequency
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window open frequency
rank: 212
is_a: core field
slot_uri: MIXS:0000246
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_size:
name: window_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: inch, meter
occurrence:
tag: occurrence
value: '1'
description: The window's length and width
title: window area/size
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window area/size
rank: 213
is_a: core field
string_serialization: '{float} {unit} x {float} {unit}'
slot_uri: MIXS:0000224
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_status:
name: window_status
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Defines whether the windows were open or closed during environmental
testing
title: window status
examples:
- value: open
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window status
rank: 214
is_a: core field
string_serialization: '[closed|open]'
slot_uri: MIXS:0000855
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_type:
name: window_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of windows
title: window type
examples:
- value: fixed window
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window type
rank: 215
is_a: core field
slot_uri: MIXS:0000856
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_type_enum
window_vert_pos:
name: window_vert_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The vertical position of the window on the wall
title: window vertical position
examples:
- value: middle
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window vertical position
rank: 216
is_a: core field
slot_uri: MIXS:0000857
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_vert_pos_enum
window_water_mold:
name: window_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the window.
title: window signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window signs of water/mold
rank: 217
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000854
multivalued: false
owner: Biosample
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
horizon_meth:
name: horizon_meth
title: horizon method
oxy_stat_samp:
name: oxy_stat_samp
range: OxyStatSampEnum
attributes:
abs_air_humidity:
name: abs_air_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram per gram, kilogram per kilogram, kilogram, pound
occurrence:
tag: occurrence
value: '1'
description: Actual mass of water vapor - mh20 - present in the air water vapor
mixture
title: absolute air humidity
examples:
- value: 9 gram per gram
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- absolute air humidity
rank: 61
is_a: core field
slot_uri: MIXS:0000122
multivalued: false
alias: abs_air_humidity
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
address:
name: address
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The street name and building number where the sampling occurred.
title: address
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- address
rank: 62
is_a: core field
string_serialization: '{integer}{text}'
slot_uri: MIXS:0000218
multivalued: false
alias: address
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
adj_room:
name: adj_room
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of rooms (room number, room name) immediately adjacent to the
sampling room
title: adjacent rooms
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- adjacent rooms
rank: 63
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000219
multivalued: false
alias: adj_room
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
aero_struc:
name: aero_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Aerospace structures typically consist of thin plates with stiffeners
for the external surfaces, bulkheads and frames to support the shape and fasteners
such as welds, rivets, screws and bolts to hold the components together
title: aerospace structure
examples:
- value: plane
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- aerospace structure
rank: 64
is_a: core field
string_serialization: '[plane|glider]'
slot_uri: MIXS:0000773
multivalued: false
alias: aero_struc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
air_temp:
name: air_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: Temperature of the air at the time of sampling
title: air temperature
examples:
- value: 20 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- air temperature
rank: 65
is_a: core field
slot_uri: MIXS:0000124
multivalued: false
alias: air_temp
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
alt:
name: alt
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Altitude is a term used to identify heights of objects such as airplanes,
space shuttles, rockets, atmospheric balloons and heights of places such as
atmospheric layers and clouds. It is used to measure the height of an object
which is above the earth's surface. In this context, the altitude measurement
is the vertical distance between the earth's surface above sea level and the
sampled position in the air
title: altitude
examples:
- value: 100 meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- altitude
rank: 26
is_a: environment field
slot_uri: MIXS:0000094
multivalued: false
alias: alt
owner: BuiltEnvInterface
domain_of:
- agriculture
- air
- built environment
- core
- food-animal and animal feed
- food-farm environment
- food-food production facility
- food-human foods
- host-associated
- human-associated
- human-gut
- human-oral
- human-skin
- human-vaginal
- hydrocarbon resources-cores
- hydrocarbon resources-fluids_swabs
- microbial mat_biofilm
- miscellaneous natural or artificial environment
- plant-associated
- sediment
- soil
- symbiont-associated
- wastewater_sludge
- water
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HostAssociatedInterface
- MiscEnvsInterface
slot_group: mixs_modified_section
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
amount_light:
name: amount_light
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: lux, lumens per square meter
occurrence:
tag: occurrence
value: '1'
description: The unit of illuminance and luminous emittance, measuring luminous
flux per unit area
title: amount of light
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- amount of light
rank: 66
is_a: core field
slot_uri: MIXS:0000140
multivalued: false
alias: amount_light
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
arch_struc:
name: arch_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: An architectural structure is a human-made, free-standing, immobile
outdoor construction
title: architectural structure
examples:
- value: shed
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- architectural structure
rank: 67
is_a: core field
slot_uri: MIXS:0000774
multivalued: false
alias: arch_struc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: arch_struc_enum
avg_dew_point:
name: avg_dew_point
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The average of dew point measures taken at the beginning of every
hour over a 24 hour period on the sampling day
title: average dew point
examples:
- value: 25.5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average dew point
rank: 68
is_a: core field
slot_uri: MIXS:0000141
multivalued: false
alias: avg_dew_point
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
avg_occup:
name: avg_occup
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Daily average occupancy of room. Indicate the number of person(s)
daily occupying the sampling room.
title: average daily occupancy
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average daily occupancy
rank: 69
is_a: core field
slot_uri: MIXS:0000775
multivalued: false
alias: avg_occup
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
avg_temp:
name: avg_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The average of temperatures taken at the beginning of every hour
over a 24 hour period on the sampling day
title: average temperature
examples:
- value: 12.5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- average temperature
rank: 70
is_a: core field
slot_uri: MIXS:0000142
multivalued: false
alias: avg_temp
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
bathroom_count:
name: bathroom_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of bathrooms in the building
title: bathroom count
examples:
- value: '1'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- bathroom count
rank: 71
is_a: core field
slot_uri: MIXS:0000776
multivalued: false
alias: bathroom_count
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
bedroom_count:
name: bedroom_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of bedrooms in the building
title: bedroom count
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- bedroom count
rank: 72
is_a: core field
slot_uri: MIXS:0000777
multivalued: false
alias: bedroom_count
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
build_docs:
name: build_docs
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building design, construction and operation documents
title: design, construction, and operation documents
examples:
- value: maintenance plans
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- design, construction, and operation documents
rank: 73
is_a: core field
slot_uri: MIXS:0000787
multivalued: false
alias: build_docs
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: build_docs_enum
build_occup_type:
name: build_occup_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: The primary function for which a building or discrete part of a building
is intended to be used
title: building occupancy type
examples:
- value: market
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- building occupancy type
rank: 74
is_a: core field
slot_uri: MIXS:0000761
multivalued: true
alias: build_occup_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: build_occup_type_enum
building_setting:
name: building_setting
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A location (geography) where a building is set
title: building setting
examples:
- value: rural
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- building setting
rank: 75
is_a: core field
slot_uri: MIXS:0000768
multivalued: false
alias: building_setting
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: building_setting_enum
built_struc_age:
name: built_struc_age
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: year
occurrence:
tag: occurrence
value: '1'
description: The age of the built structure since construction
title: built structure age
examples:
- value: '15'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure age
rank: 76
is_a: core field
slot_uri: MIXS:0000145
multivalued: false
alias: built_struc_age
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
built_struc_set:
name: built_struc_set
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The characterization of the location of the built structure as high
or low human density
title: built structure setting
examples:
- value: rural
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure setting
rank: 77
is_a: core field
string_serialization: '[urban|rural]'
slot_uri: MIXS:0000778
multivalued: false
alias: built_struc_set
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
built_struc_type:
name: built_struc_type
annotations:
expected_value:
tag: expected_value
value: free text
occurrence:
tag: occurrence
value: '1'
description: A physical structure that is a body or assemblage of bodies in space
to form a system capable of supporting loads
title: built structure type
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- built structure type
rank: 78
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000721
multivalued: false
alias: built_struc_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
carb_dioxide:
name: carb_dioxide
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: micromole per liter, parts per million
occurrence:
tag: occurrence
value: '1'
description: Carbon dioxide (gas) amount or concentration at the time of sampling
title: carbon dioxide
examples:
- value: 410 parts per million
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- carbon dioxide
rank: 50
is_a: core field
slot_uri: MIXS:0000097
multivalued: false
alias: carb_dioxide
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_area:
name: ceil_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The area of the ceiling space within the room
title: ceiling area
examples:
- value: 25 square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling area
rank: 79
is_a: core field
slot_uri: MIXS:0000148
multivalued: false
alias: ceil_area
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_cond:
name: ceil_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the ceiling at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: ceiling condition
examples:
- value: damaged
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling condition
rank: 80
is_a: core field
slot_uri: MIXS:0000779
multivalued: false
alias: ceil_cond
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_cond_enum
ceil_finish_mat:
name: ceil_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of material used to finish a ceiling
title: ceiling finish material
examples:
- value: stucco
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling finish material
rank: 81
is_a: core field
slot_uri: MIXS:0000780
multivalued: false
alias: ceil_finish_mat
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_finish_mat_enum
ceil_struc:
name: ceil_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The construction format of the ceiling
title: ceiling structure
examples:
- value: concrete
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling structure
rank: 82
is_a: core field
string_serialization: '[wood frame|concrete]'
slot_uri: MIXS:0000782
multivalued: false
alias: ceil_struc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
ceil_texture:
name: ceil_texture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The feel, appearance, or consistency of a ceiling surface
title: ceiling texture
examples:
- value: popcorn
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling texture
rank: 83
is_a: core field
slot_uri: MIXS:0000783
multivalued: false
alias: ceil_texture
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_texture_enum
ceil_thermal_mass:
name: ceil_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the ceiling to provide inertia against temperature
fluctuations. Generally this means concrete that is exposed. A metal deck that
supports a concrete slab will act thermally as long as it is exposed to room
air flow
title: ceiling thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling thermal mass
rank: 84
is_a: core field
slot_uri: MIXS:0000143
multivalued: false
alias: ceil_thermal_mass
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
ceil_type:
name: ceil_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of ceiling according to the ceiling's appearance or construction
title: ceiling type
examples:
- value: coffered
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling type
rank: 85
is_a: core field
slot_uri: MIXS:0000784
multivalued: false
alias: ceil_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ceil_type_enum
ceil_water_mold:
name: ceil_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the ceiling
title: ceiling signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ceiling signs of water/mold
rank: 86
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000781
multivalued: false
alias: ceil_water_mold
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
collection_date:
name: collection_date
annotations:
expected_value:
tag: expected_value
value: date and time
description: The date of sampling
title: collection date
notes:
- MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only
- Use modified term (amended definition)
examples:
- value: '2021-04-15'
- value: 2021-04
- value: '2021'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- collection date
rank: 3
is_a: environment field
string_serialization: '{date, arbitrary precision}'
slot_uri: MIXS:0000011
multivalued: false
alias: collection_date
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: ^[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?$
cool_syst_id:
name: cool_syst_id
annotations:
expected_value:
tag: expected_value
value: unique identifier
occurrence:
tag: occurrence
value: '1'
description: The cooling system identifier
title: cooling system identifier
examples:
- value: '12345'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- cooling system identifier
rank: 87
is_a: core field
slot_uri: MIXS:0000785
multivalued: false
alias: cool_syst_id
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
date_last_rain:
name: date_last_rain
annotations:
expected_value:
tag: expected_value
value: timestamp
occurrence:
tag: occurrence
value: '1'
description: The date of the last time it rained
title: date last rain
examples:
- value: 2018-05-11:T14:30Z
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- date last rain
rank: 88
is_a: core field
slot_uri: MIXS:0000786
multivalued: false
alias: date_last_rain
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
depth:
name: depth
annotations:
expected_value:
tag: expected_value
value: measurement value
description: The vertical distance below local surface, e.g. for sediment or soil
samples depth is measured from sediment or soil surface, respectively. Depth
can be reported as an interval for subsurface samples.
title: depth, meters
notes:
- Use modified term
comments:
- All depths must be reported in meters. Provide the numerical portion only.
examples:
- value: 0 - 0.1
- value: '1'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- depth
rank: 9
is_a: environment field
string_serialization: '{float}|{float}-{float}'
slot_uri: MIXS:0000018
multivalued: false
alias: depth
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
recommended: true
pattern: ^[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?(\s*-\s*[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?)?$
dew_point:
name: dew_point
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The temperature to which a given parcel of humid air must be cooled,
at constant barometric pressure, for water vapor to condense into water.
title: dew point
examples:
- value: 22 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- dew point
rank: 89
is_a: core field
slot_uri: MIXS:0000129
multivalued: false
alias: dew_point
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
door_comp_type:
name: door_comp_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The composite type of the door
title: door type, composite
examples:
- value: revolving
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, composite
rank: 90
is_a: core field
slot_uri: MIXS:0000795
multivalued: false
alias: door_comp_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_comp_type_enum
door_cond:
name: door_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The phsical condition of the door
title: door condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door condition
rank: 91
is_a: core field
slot_uri: MIXS:0000788
multivalued: false
alias: door_cond
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_cond_enum
door_direct:
name: door_direct
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The direction the door opens
title: door direction of opening
examples:
- value: inward
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door direction of opening
rank: 92
is_a: core field
slot_uri: MIXS:0000789
multivalued: false
alias: door_direct
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_direct_enum
door_loc:
name: door_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the door in the room
title: door location
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door location
rank: 93
is_a: core field
slot_uri: MIXS:0000790
multivalued: false
alias: door_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_loc_enum
door_mat:
name: door_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The material the door is composed of
title: door material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door material
rank: 94
is_a: core field
slot_uri: MIXS:0000791
multivalued: false
alias: door_mat
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_mat_enum
door_move:
name: door_move
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of movement of the door
title: door movement
examples:
- value: swinging
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door movement
rank: 95
is_a: core field
slot_uri: MIXS:0000792
multivalued: false
alias: door_move
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_move_enum
door_size:
name: door_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The size of the door
title: door area or size
examples:
- value: 2.5 square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door area or size
rank: 96
is_a: core field
slot_uri: MIXS:0000158
multivalued: false
alias: door_size
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
door_type:
name: door_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of door material
title: door type
examples:
- value: wooden
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type
rank: 97
is_a: core field
slot_uri: MIXS:0000794
multivalued: false
alias: door_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_enum
door_type_metal:
name: door_type_metal
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of metal door
title: door type, metal
examples:
- value: hollow
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, metal
rank: 98
is_a: core field
slot_uri: MIXS:0000796
multivalued: false
alias: door_type_metal
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_metal_enum
door_type_wood:
name: door_type_wood
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of wood door
title: door type, wood
examples:
- value: battened
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door type, wood
rank: 99
is_a: core field
slot_uri: MIXS:0000797
multivalued: false
alias: door_type_wood
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: door_type_wood_enum
door_water_mold:
name: door_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on a door
title: door signs of water/mold
examples:
- value: presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- door signs of water/mold
rank: 100
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000793
multivalued: false
alias: door_water_mold
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
drawings:
name: drawings
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The buildings architectural drawings; if design is chosen, indicate
phase-conceptual, schematic, design development, and construction documents
title: drawings
examples:
- value: sketch
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- drawings
rank: 101
is_a: core field
slot_uri: MIXS:0000798
multivalued: false
alias: drawings
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: drawings_enum
ecosystem:
name: ecosystem
description: An ecosystem is a combination of a physical environment (abiotic
factors) and all the organisms (biotic factors) that interact with this environment.
Ecosystem is in position 1/5 in a GOLD path.
comments:
- The abiotic factors play a profound role on the type and composition of organisms
in a given environment. The GOLD Ecosystem at the top of the five-level classification
system is aimed at capturing the broader environment from which an organism
or environmental sample is collected. The three broad groups under Ecosystem
are Environmental, Host-associated, and Engineered. They represent samples collected
from a natural environment or from another organism or from engineered environments
like bioreactors respectively.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 9
is_a: gold_path_field
alias: ecosystem
owner: BuiltEnvInterface
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemEnum
recommended: true
ecosystem_category:
name: ecosystem_category
description: Ecosystem categories represent divisions within the ecosystem based
on specific characteristics of the environment from where an organism or sample
is isolated. Ecosystem category is in position 2/5 in a GOLD path.
comments:
- The Environmental ecosystem (for example) is divided into Air, Aquatic and Terrestrial.
Ecosystem categories for Host-associated samples can be individual hosts or
phyla and for engineered samples it may be manipulated environments like bioreactors,
solid waste etc.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 10
is_a: gold_path_field
alias: ecosystem_category
owner: BuiltEnvInterface
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemCategoryEnum
recommended: true
ecosystem_subtype:
name: ecosystem_subtype
description: Ecosystem subtypes represent further subdivision of Ecosystem types
into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD
path.
comments:
- Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided
(for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in
the Ecosystem subtype category.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 12
is_a: gold_path_field
alias: ecosystem_subtype
owner: BuiltEnvInterface
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemSubtypeEnum
recommended: true
ecosystem_type:
name: ecosystem_type
description: Ecosystem types represent things having common characteristics within
the Ecosystem Category. These common characteristics based grouping is still
broad but specific to the characteristics of a given environment. Ecosystem
type is in position 3/5 in a GOLD path.
comments:
- The Aquatic ecosystem category (for example) may have ecosystem types like Marine
or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor
air as different Ecosystem Types. In the case of Host-associated samples, ecosystem
type can represent Respiratory system, Digestive system, Roots etc.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 11
is_a: gold_path_field
alias: ecosystem_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: EcosystemTypeEnum
recommended: true
elev:
name: elev
description: Elevation of the sampling site is its height above a fixed reference
point, most commonly the mean sea level. Elevation is mainly used when referring
to points on the earth's surface, while altitude is used for points above the
surface, such as an aircraft in flight or a spacecraft in orbit.
title: elevation, meters
comments:
- All elevations must be reported in meters. Provide the numerical portion only.
- Please use https://www.advancedconverter.com/map-tools/find-altitude-by-coordinates,
if needed, to help estimate the elevation based on latitude and longitude coordinates.
examples:
- value: '225'
- value: '0'
- value: '1250'
from_schema: https://w3id.org/nmdc/nmdc
rank: 6
is_a: environment field
slot_uri: MIXS:0000093
multivalued: false
alias: elev
owner: BuiltEnvInterface
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: float
required: true
elevator:
name: elevator
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of elevators within the built structure
title: elevator count
examples:
- value: '2'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- elevator count
rank: 102
is_a: core field
slot_uri: MIXS:0000799
multivalued: false
alias: elevator
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
env_broad_scale:
name: env_broad_scale
description: 'In this field, report which major environmental system your sample
or specimen came from. The systems identified should have a coarse spatial grain,
to provide the general environmental context of where the sampling was done
(e.g. were you in the desert or a rainforest?). We recommend using subclasses
of ENVO''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. Format
(one term): termLabel [termID], Format (multiple terms): termLabel [termID]|termLabel
[termID]|termLabel [termID]. Example: Annotating a water sample from the photic
zone in middle of the Atlantic Ocean, consider: oceanic epipelagic zone biome
[ENVO:01000033]. Example: Annotating a sample from the Amazon rainforest consider:
tropical moist broadleaf forest biome [ENVO:01000228]. If needed, request new
terms on the ENVO tracker, identified here: http://www.obofoundry.org/ontology/envo.html'
title: broad-scale environmental context
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
from_schema: https://w3id.org/nmdc/nmdc
rank: 6
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
multivalued: false
alias: env_broad_scale
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
env_local_scale:
name: env_local_scale
description: 'Report the entity or entities which are in the sample or specimen’s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial
grain than your entry for env_broad_scale. Terms, such as anatomical sites,
from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
title: local environmental context
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
examples:
- value: canopy [ENVO:00000047]
- value: herb and fern layer [ENVO:01000337]
- value: litter layer [ENVO:01000338]
- value: understory [01000335]
- value: shrub layer [ENVO:01000336]
from_schema: https://w3id.org/nmdc/nmdc
rank: 7
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000013
multivalued: false
alias: env_local_scale
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
env_medium:
name: env_medium
description: 'Report the environmental material(s) immediately surrounding the
sample or specimen at the time of sampling. We recommend using subclasses of
''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
. Terms from other OBO ontologies are permissible as long as they reference
mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
(e.g. a tree, a leaf, a table top).'
title: environmental medium
notes:
- range changed to enumeration late in makefile, so this is modified (but "sample
ID" anyway)
examples:
- value: soil [ENVO:00001998]
from_schema: https://w3id.org/nmdc/nmdc
rank: 8
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
multivalued: false
alias: env_medium
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
escalator:
name: escalator
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of escalators within the built structure
title: escalator count
examples:
- value: '4'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- escalator count
rank: 103
is_a: core field
slot_uri: MIXS:0000800
multivalued: false
alias: escalator
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
exp_duct:
name: exp_duct
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The amount of exposed ductwork in the room
title: exposed ductwork
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exposed ductwork
rank: 104
is_a: core field
slot_uri: MIXS:0000144
multivalued: false
alias: exp_duct
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
exp_pipe:
name: exp_pipe
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of exposed pipes in the room
title: exposed pipes
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exposed pipes
rank: 105
is_a: core field
slot_uri: MIXS:0000220
multivalued: false
alias: exp_pipe
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
experimental_factor:
name: experimental_factor
annotations:
expected_value:
tag: expected_value
value: text or EFO and/or OBI
description: Experimental factors are essentially the variable aspects of an experiment
design which can be used to describe an experiment, or set of experiments, in
an increasingly detailed manner. This field accepts ontology terms from Experimental
Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For
a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO;
for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI
title: experimental factor
examples:
- value: time series design [EFO:EFO_0001779]
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- experimental factor
rank: 12
is_a: investigation field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000008
multivalued: false
alias: experimental_factor
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_section
range: string
ext_door:
name: ext_door
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of exterior doors in the built structure
title: exterior door count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- exterior door count
rank: 106
is_a: core field
slot_uri: MIXS:0000170
multivalued: false
alias: ext_door
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
ext_wall_orient:
name: ext_wall_orient
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The orientation of the exterior wall
title: orientations of exterior wall
examples:
- value: northwest
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- orientations of exterior wall
rank: 107
is_a: core field
slot_uri: MIXS:0000817
multivalued: false
alias: ext_wall_orient
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ext_wall_orient_enum
ext_window_orient:
name: ext_window_orient
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The compass direction the exterior window of the room is facing
title: orientations of exterior window
examples:
- value: southwest
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- orientations of exterior window
rank: 108
is_a: core field
slot_uri: MIXS:0000818
multivalued: false
alias: ext_window_orient
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: ext_window_orient_enum
filter_type:
name: filter_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: A device which removes solid particulates or airborne molecular contaminants
title: filter type
examples:
- value: HEPA
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- filter type
rank: 109
is_a: core field
slot_uri: MIXS:0000765
multivalued: true
alias: filter_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: filter_type_enum
fireplace_type:
name: fireplace_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A firebox with chimney
title: fireplace type
examples:
- value: wood burning
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- fireplace type
rank: 110
is_a: core field
string_serialization: '[gas burning|wood burning]'
slot_uri: MIXS:0000802
multivalued: false
alias: fireplace_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
floor_age:
name: floor_age
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: years, weeks, days
occurrence:
tag: occurrence
value: '1'
description: The time period since installment of the carpet or flooring
title: floor age
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor age
rank: 111
is_a: core field
slot_uri: MIXS:0000164
multivalued: false
alias: floor_age
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_area:
name: floor_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The area of the floor space within the room
title: floor area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor area
rank: 112
is_a: core field
slot_uri: MIXS:0000165
multivalued: false
alias: floor_area
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_cond:
name: floor_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the floor at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: floor condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor condition
rank: 113
is_a: core field
slot_uri: MIXS:0000803
multivalued: false
alias: floor_cond
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_cond_enum
floor_count:
name: floor_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of floors in the building, including basements and mechanical
penthouse
title: floor count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor count
rank: 114
is_a: core field
slot_uri: MIXS:0000225
multivalued: false
alias: floor_count
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
floor_finish_mat:
name: floor_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The floor covering type; the finished surface that is walked on
title: floor finish material
examples:
- value: carpet
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor finish material
rank: 115
is_a: core field
slot_uri: MIXS:0000804
multivalued: false
alias: floor_finish_mat
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_finish_mat_enum
floor_struc:
name: floor_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Refers to the structural elements and subfloor upon which the finish
flooring is installed
title: floor structure
examples:
- value: concrete
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor structure
rank: 116
is_a: core field
slot_uri: MIXS:0000806
multivalued: false
alias: floor_struc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_struc_enum
floor_thermal_mass:
name: floor_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the floor to provide inertia against temperature fluctuations
title: floor thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor thermal mass
rank: 117
is_a: core field
slot_uri: MIXS:0000166
multivalued: false
alias: floor_thermal_mass
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
floor_water_mold:
name: floor_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew in a room
title: floor signs of water/mold
examples:
- value: ceiling discoloration
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- floor signs of water/mold
rank: 118
is_a: core field
slot_uri: MIXS:0000805
multivalued: false
alias: floor_water_mold
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: floor_water_mold_enum
freq_clean:
name: freq_clean
annotations:
expected_value:
tag: expected_value
value: enumeration or {text}
occurrence:
tag: occurrence
value: '1'
description: The number of times the sample location is cleaned. Frequency of
cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually.
title: frequency of cleaning
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- frequency of cleaning
rank: 119
is_a: core field
slot_uri: MIXS:0000226
multivalued: false
alias: freq_clean
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
freq_cook:
name: freq_cook
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of times a meal is cooked per week
title: frequency of cooking
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- frequency of cooking
rank: 120
is_a: core field
slot_uri: MIXS:0000227
multivalued: false
alias: freq_cook
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
furniture:
name: furniture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The types of furniture present in the sampled room
title: furniture
examples:
- value: chair
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- furniture
rank: 121
is_a: core field
slot_uri: MIXS:0000807
multivalued: false
alias: furniture
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: furniture_enum
gender_restroom:
name: gender_restroom
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The gender type of the restroom
title: gender of restroom
examples:
- value: male
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- gender of restroom
rank: 122
is_a: core field
slot_uri: MIXS:0000808
multivalued: false
alias: gender_restroom
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: gender_restroom_enum
geo_loc_name:
name: geo_loc_name
annotations:
expected_value:
tag: expected_value
value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
name'
description: The geographical origin of the sample as defined by the country or
sea name followed by specific region name.
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- geographic location (country and/or sea,region)
rank: 4
is_a: environment field
string_serialization: '{text}: {text}, {text}'
slot_uri: MIXS:0000010
multivalued: false
alias: geo_loc_name
owner: BuiltEnvInterface
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: '^[^:, ][^:]*: [^:, ][^,]*, [^:, ].*$'
hall_count:
name: hall_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The total count of hallways and cooridors in the built structure
title: hallway/corridor count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- hallway/corridor count
rank: 123
is_a: core field
slot_uri: MIXS:0000228
multivalued: false
alias: hall_count
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
handidness:
name: handidness
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The handidness of the individual sampled
title: handidness
examples:
- value: right handedness
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- handidness
rank: 124
is_a: core field
slot_uri: MIXS:0000809
multivalued: false
alias: handidness
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: handidness_enum
heat_cool_type:
name: heat_cool_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Methods of conditioning or heating a room or building
title: heating and cooling system type
examples:
- value: heat pump
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating and cooling system type
rank: 125
is_a: core field
slot_uri: MIXS:0000766
multivalued: true
alias: heat_cool_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: heat_cool_type_enum
heat_deliv_loc:
name: heat_deliv_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The location of heat delivery within the room
title: heating delivery locations
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating delivery locations
rank: 126
is_a: core field
slot_uri: MIXS:0000810
multivalued: false
alias: heat_deliv_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: heat_deliv_loc_enum
heat_sys_deliv_meth:
name: heat_sys_deliv_meth
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The method by which the heat is delivered through the system
title: heating system delivery method
examples:
- value: radiant
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating system delivery method
rank: 127
is_a: core field
string_serialization: '[conductive|radiant]'
slot_uri: MIXS:0000812
multivalued: false
alias: heat_sys_deliv_meth
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
heat_system_id:
name: heat_system_id
annotations:
expected_value:
tag: expected_value
value: unique identifier
occurrence:
tag: occurrence
value: '1'
description: The heating system identifier
title: heating system identifier
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- heating system identifier
rank: 128
is_a: core field
slot_uri: MIXS:0000833
multivalued: false
alias: heat_system_id
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
height_carper_fiber:
name: height_carper_fiber
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: centimeter
occurrence:
tag: occurrence
value: '1'
description: The average carpet fiber height in the indoor environment
title: height carpet fiber mat
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- height carpet fiber mat
rank: 129
is_a: core field
slot_uri: MIXS:0000167
multivalued: false
alias: height_carper_fiber
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
indoor_space:
name: indoor_space
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: A distinguishable space within a structure, the purpose for which
discrete areas of a building is used
title: indoor space
examples:
- value: foyer
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- indoor space
rank: 130
is_a: core field
slot_uri: MIXS:0000763
multivalued: false
alias: indoor_space
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: indoor_space_enum
indoor_surf:
name: indoor_surf
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Type of indoor surface
title: indoor surface
examples:
- value: wall
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- indoor surface
rank: 131
is_a: core field
slot_uri: MIXS:0000764
multivalued: false
alias: indoor_surf
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: indoor_surf_enum
inside_lux:
name: inside_lux
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: kilowatt per square metre
occurrence:
tag: occurrence
value: '1'
description: The recorded value at sampling time (power density)
title: inside lux light
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- inside lux light
rank: 132
is_a: core field
slot_uri: MIXS:0000168
multivalued: false
alias: inside_lux
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
int_wall_cond:
name: int_wall_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the wall at the time of sampling; photos
or video preferred; use drawings to indicate location of damaged areas
title: interior wall condition
examples:
- value: damaged
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- interior wall condition
rank: 133
is_a: core field
slot_uri: MIXS:0000813
multivalued: false
alias: int_wall_cond
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: int_wall_cond_enum
last_clean:
name: last_clean
annotations:
expected_value:
tag: expected_value
value: timestamp
occurrence:
tag: occurrence
value: '1'
description: The last time the floor was cleaned (swept, mopped, vacuumed)
title: last time swept/mopped/vacuumed
examples:
- value: 2018-05-11:T14:30Z
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- last time swept/mopped/vacuumed
rank: 134
is_a: core field
slot_uri: MIXS:0000814
multivalued: false
alias: last_clean
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
lat_lon:
name: lat_lon
description: The geographical origin of the sample as defined by latitude and
longitude. The values should be reported in decimal degrees and in WGS84 system
title: geographic location (latitude and longitude)
notes:
- This is currently a required field but it's not clear if this should be required
for human hosts
from_schema: https://w3id.org/nmdc/nmdc
rank: 5
is_a: environment field
string_serialization: '{lat lon}'
slot_uri: MIXS:0000009
multivalued: false
alias: lat_lon
owner: BuiltEnvInterface
domain_of:
- FieldResearchSite
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
required: true
pattern: ^[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?)\s[-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)$
light_type:
name: light_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Application of light to achieve some practical or aesthetic effect.
Lighting includes the use of both artificial light sources such as lamps and
light fixtures, as well as natural illumination by capturing daylight. Can also
include absence of light
title: light type
examples:
- value: desk lamp
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- light type
rank: 135
is_a: core field
slot_uri: MIXS:0000769
multivalued: true
alias: light_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: light_type_enum
max_occup:
name: max_occup
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The maximum amount of people allowed in the indoor environment
title: maximum occupancy
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- maximum occupancy
rank: 136
is_a: core field
slot_uri: MIXS:0000229
multivalued: false
alias: max_occup
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
mech_struc:
name: mech_struc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: 'mechanical structure: a moving structure'
title: mechanical structure
examples:
- value: elevator
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- mechanical structure
rank: 137
is_a: core field
slot_uri: MIXS:0000815
multivalued: false
alias: mech_struc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: mech_struc_enum
number_pets:
name: number_pets
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of pets residing in the sampled space
title: number of pets
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of pets
rank: 138
is_a: core field
slot_uri: MIXS:0000231
multivalued: false
alias: number_pets
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
number_plants:
name: number_plants
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of plant(s) in the sampling space
title: number of houseplants
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of houseplants
rank: 139
is_a: core field
slot_uri: MIXS:0000230
multivalued: false
alias: number_plants
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
number_resident:
name: number_resident
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: The number of individuals currently occupying in the sampling location
title: number of residents
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- number of residents
rank: 140
is_a: core field
slot_uri: MIXS:0000232
multivalued: false
alias: number_resident
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
occup_density_samp:
name: occup_density_samp
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Average number of occupants at time of sampling per square footage
title: occupant density at sampling
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupant density at sampling
rank: 141
is_a: core field
slot_uri: MIXS:0000217
multivalued: false
alias: occup_density_samp
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
occup_document:
name: occup_document
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of documentation of occupancy
title: occupancy documentation
examples:
- value: estimate
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupancy documentation
rank: 142
is_a: core field
slot_uri: MIXS:0000816
multivalued: false
alias: occup_document
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: occup_document_enum
occup_samp:
name: occup_samp
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Number of occupants present at time of sample within the given space
title: occupancy at sampling
examples:
- value: '10'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- occupancy at sampling
rank: 143
is_a: core field
slot_uri: MIXS:0000772
multivalued: false
alias: occup_samp
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
organism_count:
name: organism_count
annotations:
expected_value:
tag: expected_value
value: organism name;measurement value;enumeration
preferred_unit:
tag: preferred_unit
value: number of cells per cubic meter, number of cells per milliliter, number
of cells per cubic centimeter
occurrence:
tag: occurrence
value: m
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- organism count
rank: 30
is_a: core field
slot_uri: MIXS:0000103
multivalued: false
alias: organism_count
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_core_section
range: string
pattern: ^([-+]?[0-9]*\.?[0-9]+ +\S.*\|)*([-+]?[0-9]*\.?[0-9]+ +\S.*)$
pres_animal_insect:
name: pres_animal_insect
annotations:
expected_value:
tag: expected_value
value: enumeration;count
occurrence:
tag: occurrence
value: '1'
description: The type and number of animals or insects present in the sampling
space.
title: presence of pets, animals, or insects
examples:
- value: cat;5
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- presence of pets, animals, or insects
rank: 144
is_a: core field
slot_uri: MIXS:0000819
multivalued: false
alias: pres_animal_insect
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^(cat|dog|rodent|snake|other);\d+$
quad_pos:
name: quad_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The quadrant position of the sampling room within the building
title: quadrant position
examples:
- value: West side
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- quadrant position
rank: 145
is_a: core field
slot_uri: MIXS:0000820
multivalued: false
alias: quad_pos
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: quad_pos_enum
rel_air_humidity:
name: rel_air_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: percentage
occurrence:
tag: occurrence
value: '1'
description: Partial vapor and air pressure, density of the vapor and air, or
by the actual mass of the vapor and air
title: relative air humidity
examples:
- value: 80%
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- relative air humidity
rank: 146
is_a: core field
slot_uri: MIXS:0000121
multivalued: false
alias: rel_air_humidity
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
rel_humidity_out:
name: rel_humidity_out
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram of air, kilogram of air
occurrence:
tag: occurrence
value: '1'
description: The recorded outside relative humidity value at the time of sampling
title: outside relative humidity
examples:
- value: 12 per kilogram of air
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- outside relative humidity
rank: 147
is_a: core field
slot_uri: MIXS:0000188
multivalued: false
alias: rel_humidity_out
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
rel_samp_loc:
name: rel_samp_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The sampling location within the train car
title: relative sampling location
examples:
- value: center of car
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- relative sampling location
rank: 148
is_a: core field
slot_uri: MIXS:0000821
multivalued: false
alias: rel_samp_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: rel_samp_loc_enum
room_air_exch_rate:
name: room_air_exch_rate
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: liter per hour
occurrence:
tag: occurrence
value: '1'
description: The rate at which outside air replaces indoor air in a given space
title: room air exchange rate
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room air exchange rate
rank: 149
is_a: core field
slot_uri: MIXS:0000169
multivalued: false
alias: room_air_exch_rate
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
room_architec_elem:
name: room_architec_elem
annotations:
expected_value:
tag: expected_value
value: free text
occurrence:
tag: occurrence
value: '1'
description: The unique details and component parts that, together, form the architecture
of a distinguisahable space within a built structure
title: room architectural elements
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room architectural elements
rank: 150
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000233
multivalued: false
alias: room_architec_elem
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_condt:
name: room_condt
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The condition of the room at the time of sampling
title: room condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room condition
rank: 151
is_a: core field
slot_uri: MIXS:0000822
multivalued: false
alias: room_condt
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_condt_enum
room_connected:
name: room_connected
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: List of rooms connected to the sampling room by a doorway
title: rooms connected by a doorway
examples:
- value: office
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms connected by a doorway
rank: 152
is_a: core field
slot_uri: MIXS:0000826
multivalued: false
alias: room_connected
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_connected_enum
room_count:
name: room_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The total count of rooms in the built structure including all room
types
title: room count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room count
rank: 153
is_a: core field
slot_uri: MIXS:0000234
multivalued: false
alias: room_count
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_dim:
name: room_dim
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: meter
occurrence:
tag: occurrence
value: '1'
description: The length, width and height of sampling room
title: room dimensions
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room dimensions
rank: 154
is_a: core field
string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}'
slot_uri: MIXS:0000192
multivalued: false
alias: room_dim
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_door_dist:
name: room_door_dist
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: meter
occurrence:
tag: occurrence
value: '1'
description: Distance between doors (meters) in the hallway between the sampling
room and adjacent rooms
title: room door distance
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room door distance
rank: 155
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000193
multivalued: false
alias: room_door_dist
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_door_share:
name: room_door_share
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) sharing a door with the
sampling room
title: rooms that share a door with sampling room
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that share a door with sampling room
rank: 156
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000242
multivalued: false
alias: room_door_share
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_hallway:
name: room_hallway
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) located in the same hallway
as sampling room
title: rooms that are on the same hallway
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that are on the same hallway
rank: 157
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000238
multivalued: false
alias: room_hallway
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_loc:
name: room_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The position of the room within the building
title: room location in building
examples:
- value: interior room
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room location in building
rank: 158
is_a: core field
slot_uri: MIXS:0000823
multivalued: false
alias: room_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_loc_enum
room_moist_dam_hist:
name: room_moist_dam_hist
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The history of moisture damage or mold in the past 12 months. Number
of events of moisture damage or mold observed
title: room moisture damage or mold history
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room moisture damage or mold history
rank: 159
is_a: core field
slot_uri: MIXS:0000235
multivalued: false
alias: room_moist_dam_hist
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: integer
room_net_area:
name: room_net_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square feet, square meter
occurrence:
tag: occurrence
value: '1'
description: The net floor area of sampling room. Net area excludes wall thicknesses
title: room net area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room net area
rank: 160
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000194
multivalued: false
alias: room_net_area
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_occup:
name: room_occup
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Count of room occupancy at time of sampling
title: room occupancy
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room occupancy
rank: 161
is_a: core field
slot_uri: MIXS:0000236
multivalued: false
alias: room_occup
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
room_samp_pos:
name: room_samp_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The horizontal sampling position in the room relative to architectural
elements
title: room sampling position
examples:
- value: south corner
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room sampling position
rank: 162
is_a: core field
slot_uri: MIXS:0000824
multivalued: false
alias: room_samp_pos
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_samp_pos_enum
room_type:
name: room_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The main purpose or activity of the sampling room. A room is any
distinguishable space within a structure
title: room type
examples:
- value: bathroom
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room type
rank: 163
is_a: core field
slot_uri: MIXS:0000825
multivalued: false
alias: room_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: room_type_enum
room_vol:
name: room_vol
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: cubic feet, cubic meter
occurrence:
tag: occurrence
value: '1'
description: Volume of sampling room
title: room volume
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room volume
rank: 164
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0000195
multivalued: false
alias: room_vol
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_wall_share:
name: room_wall_share
annotations:
expected_value:
tag: expected_value
value: room name;room number
occurrence:
tag: occurrence
value: '1'
description: List of room(s) (room number, room name) sharing a wall with the
sampling room
title: rooms that share a wall with sampling room
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- rooms that share a wall with sampling room
rank: 165
is_a: core field
string_serialization: '{text};{integer}'
slot_uri: MIXS:0000243
multivalued: false
alias: room_wall_share
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
room_window_count:
name: room_window_count
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Number of windows in the room
title: room window count
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- room window count
rank: 166
is_a: core field
slot_uri: MIXS:0000237
multivalued: false
alias: room_window_count
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: integer
samp_floor:
name: samp_floor
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The floor of the building, where the sampling room is located
title: sampling floor
examples:
- value: 4th floor
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling floor
rank: 167
is_a: core field
slot_uri: MIXS:0000828
multivalued: false
alias: samp_floor
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: samp_floor_enum
samp_room_id:
name: samp_room_id
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: Sampling room number. This ID should be consistent with the designations
on the building floor plans
title: sampling room ID or name
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling room ID or name
rank: 168
is_a: core field
slot_uri: MIXS:0000244
multivalued: false
alias: samp_room_id
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_sort_meth:
name: samp_sort_meth
annotations:
expected_value:
tag: expected_value
value: description of method
occurrence:
tag: occurrence
value: m
description: Method by which samples are sorted; open face filter collecting total
suspended particles, prefilter to remove particles larger than X micrometers
in diameter, where common values of X would be 10 and 2.5 full size sorting
in a cascade impactor.
title: sample size sorting method
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sample size sorting method
rank: 169
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000216
multivalued: false
alias: samp_sort_meth
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_time_out:
name: samp_time_out
annotations:
expected_value:
tag: expected_value
value: time
preferred_unit:
tag: preferred_unit
value: hour
occurrence:
tag: occurrence
value: '1'
description: The recent and long term history of outside sampling
title: sampling time outside
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling time outside
rank: 170
is_a: core field
slot_uri: MIXS:0000196
multivalued: false
alias: samp_time_out
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
samp_weather:
name: samp_weather
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The weather on the sampling day
title: sampling day weather
examples:
- value: foggy
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sampling day weather
rank: 171
is_a: core field
slot_uri: MIXS:0000827
multivalued: false
alias: samp_weather
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: samp_weather_enum
sample_link:
name: sample_link
description: A unique identifier to assign parent-child, subsample, or sibling
samples. This is relevant when a sample or other material was used to generate
the new sample.
title: sample linkage
notes:
- 'also tempted to include SampIdNewTermsMixin but if len(slot_usage.keys()) >
1 and "placeholder" in slot_usage.keys():AttributeError: ''list'' object has
no attribute ''keys'''
comments:
- 'This field allows multiple entries separated by ; (Examples: Soil collected
from the field will link with the soil used in an incubation. The soil a plant
was grown in links to the plant sample. An original culture sample was transferred
to a new vial and generated a new sample)'
examples:
- value: IGSN:DSJ0284
from_schema: https://w3id.org/nmdc/nmdc
rank: 5
string_serialization: '{text}:{text}'
multivalued: false
alias: sample_link
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
- SampIdNewTermsMixin
slot_group: sample_id_section
range: string
recommended: true
pattern: '[^\:\n\r]+\:[^\:\n\r]+'
season:
name: season
annotations:
expected_value:
tag: expected_value
value: NCIT:C94729
occurrence:
tag: occurrence
value: '1'
description: The season when sampling occurred. Any of the four periods into which
the year is divided by the equinoxes and solstices. This field accepts terms
listed under season (http://purl.obolibrary.org/obo/NCIT_C94729).
title: season
examples:
- value: autumn [NCIT:C94733]
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- season
rank: 172
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000829
multivalued: false
alias: season
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
season_use:
name: season_use
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The seasons the space is occupied
title: seasonal use
examples:
- value: Winter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- seasonal use
rank: 173
is_a: core field
slot_uri: MIXS:0000830
multivalued: false
alias: season_use
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: season_use_enum
shad_dev_water_mold:
name: shad_dev_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the shading device
title: shading device signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device signs of water/mold
rank: 174
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000834
multivalued: false
alias: shad_dev_water_mold
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_cond:
name: shading_device_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the shading device at the time of sampling
title: shading device condition
examples:
- value: new
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device condition
rank: 175
is_a: core field
slot_uri: MIXS:0000831
multivalued: false
alias: shading_device_cond
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: shading_device_cond_enum
shading_device_loc:
name: shading_device_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The location of the shading device in relation to the built structure
title: shading device location
examples:
- value: exterior
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device location
rank: 176
is_a: core field
string_serialization: '[exterior|interior]'
slot_uri: MIXS:0000832
multivalued: false
alias: shading_device_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_mat:
name: shading_device_mat
annotations:
expected_value:
tag: expected_value
value: material name
occurrence:
tag: occurrence
value: '1'
description: The material the shading device is composed of
title: shading device material
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device material
rank: 177
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000245
multivalued: false
alias: shading_device_mat
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
shading_device_type:
name: shading_device_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of shading device
title: shading device type
examples:
- value: slatted aluminum awning
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- shading device type
rank: 178
is_a: core field
slot_uri: MIXS:0000835
multivalued: false
alias: shading_device_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: shading_device_type_enum
size_frac:
name: size_frac
annotations:
expected_value:
tag: expected_value
value: filter size value range
description: Filtering pore size used in sample preparation
title: size fraction selected
examples:
- value: 0-0.22 micrometer
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- size fraction selected
rank: 285
is_a: nucleic acid sequence source field
string_serialization: '{float}-{float} {unit}'
slot_uri: MIXS:0000017
multivalued: false
alias: size_frac
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_core_section
range: string
space_typ_state:
name: space_typ_state
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Customary or normal state of the space
title: space typical state
examples:
- value: typically occupied
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- space typical state
rank: 179
is_a: core field
string_serialization: '[typically occupied|typically unoccupied]'
slot_uri: MIXS:0000770
multivalued: false
alias: space_typ_state
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
specific:
name: specific
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: 'The building specifications. If design is chosen, indicate phase:
conceptual, schematic, design development, construction documents'
title: specifications
examples:
- value: construction
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- specifications
rank: 180
is_a: core field
slot_uri: MIXS:0000836
multivalued: false
alias: specific
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: specific_enum
specific_ecosystem:
name: specific_ecosystem
description: Specific ecosystems represent specific features of the environment
like aphotic zone in an ocean or gastric mucosa within a host digestive system.
Specific ecosystem is in position 5/5 in a GOLD path.
comments:
- Specific ecosystems help to define samples based on very specific characteristics
of an environment under the five-level classification system.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://gold.jgi.doe.gov/help
rank: 13
is_a: gold_path_field
alias: specific_ecosystem
owner: BuiltEnvInterface
domain_of:
- Biosample
- Study
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: SpecificEcosystemEnum
recommended: true
specific_humidity:
name: specific_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: gram of air, kilogram of air
occurrence:
tag: occurrence
value: '1'
description: The mass of water vapour in a unit mass of moist air, usually expressed
as grams of vapour per kilogram of air, or, in air conditioning, as grains per
pound.
title: specific humidity
examples:
- value: 15 per kilogram of air
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- specific humidity
rank: 181
is_a: core field
slot_uri: MIXS:0000214
multivalued: false
alias: specific_humidity
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
substructure_type:
name: substructure_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: The substructure or under building is that largely hidden section
of the building which is built off the foundations to the ground floor level
title: substructure type
examples:
- value: basement
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- substructure type
rank: 182
is_a: core field
slot_uri: MIXS:0000767
multivalued: true
alias: substructure_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: substructure_type_enum
surf_air_cont:
name: surf_air_cont
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: m
description: Contaminant identified on surface
title: surface-air contaminant
examples:
- value: radon
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface-air contaminant
rank: 183
is_a: core field
slot_uri: MIXS:0000759
multivalued: true
alias: surf_air_cont
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: surf_air_cont_enum
surf_humidity:
name: surf_humidity
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: percentage
occurrence:
tag: occurrence
value: '1'
description: 'Surfaces: water activity as a function of air and material moisture'
title: surface humidity
examples:
- value: 10%
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface humidity
rank: 184
is_a: core field
slot_uri: MIXS:0000123
multivalued: false
alias: surf_humidity
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
surf_material:
name: surf_material
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Surface materials at the point of sampling
title: surface material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface material
rank: 185
is_a: core field
slot_uri: MIXS:0000758
multivalued: false
alias: surf_material
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: surf_material_enum
surf_moisture:
name: surf_moisture
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: parts per million, gram per cubic meter, gram per square meter
occurrence:
tag: occurrence
value: '1'
description: Water held on a surface
title: surface moisture
examples:
- value: 0.01 gram per square meter
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface moisture
rank: 186
is_a: core field
slot_uri: MIXS:0000128
multivalued: false
alias: surf_moisture
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
surf_moisture_ph:
name: surf_moisture_ph
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: ph measurement of surface
title: surface moisture pH
examples:
- value: '7'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface moisture pH
rank: 187
is_a: core field
slot_uri: MIXS:0000760
multivalued: false
alias: surf_moisture_ph
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: double
surf_temp:
name: surf_temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: Temperature of the surface at the time of sampling
title: surface temperature
examples:
- value: 15 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- surface temperature
rank: 188
is_a: core field
slot_uri: MIXS:0000125
multivalued: false
alias: surf_temp
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
temp:
name: temp
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
description: Temperature of the sample at the time of sampling.
title: temperature
examples:
- value: 25 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- temperature
rank: 37
is_a: environment field
slot_uri: MIXS:0000113
multivalued: false
alias: temp
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
temp_out:
name: temp_out
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The recorded temperature value at sampling time outside
title: temperature outside house
examples:
- value: 5 degree Celsius
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- temperature outside house
rank: 189
is_a: core field
slot_uri: MIXS:0000197
multivalued: false
alias: temp_out
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
train_line:
name: train_line
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The subway line name
title: train line
examples:
- value: red
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train line
rank: 190
is_a: core field
slot_uri: MIXS:0000837
multivalued: false
alias: train_line
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_line_enum
train_stat_loc:
name: train_stat_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The train station collection location
title: train station collection location
examples:
- value: forest hills
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train station collection location
rank: 191
is_a: core field
slot_uri: MIXS:0000838
multivalued: false
alias: train_stat_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_stat_loc_enum
train_stop_loc:
name: train_stop_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The train stop collection location
title: train stop collection location
examples:
- value: end
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- train stop collection location
rank: 192
is_a: core field
slot_uri: MIXS:0000839
multivalued: false
alias: train_stop_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: train_stop_loc_enum
typ_occup_density:
name: typ_occup_density
annotations:
expected_value:
tag: expected_value
value: measurement value
occurrence:
tag: occurrence
value: '1'
description: Customary or normal density of occupants
title: typical occupant density
examples:
- value: '25'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- typical occupant density
rank: 193
is_a: core field
slot_uri: MIXS:0000771
multivalued: false
alias: typ_occup_density
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: double
ventilation_type:
name: ventilation_type
annotations:
expected_value:
tag: expected_value
value: ventilation type name
occurrence:
tag: occurrence
value: '1'
description: Ventilation system used in the sampled premises
title: ventilation type
examples:
- value: Operable windows
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- ventilation type
rank: 57
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000756
multivalued: false
alias: ventilation_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- AirInterface
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
vis_media:
name: vis_media
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building visual media
title: visual media
examples:
- value: 3D scans
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- visual media
rank: 194
is_a: core field
slot_uri: MIXS:0000840
multivalued: false
alias: vis_media
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: vis_media_enum
wall_area:
name: wall_area
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The total area of the sampled room's walls
title: wall area
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall area
rank: 195
is_a: core field
slot_uri: MIXS:0000198
multivalued: false
alias: wall_area
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_const_type:
name: wall_const_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The building class of the wall defined by the composition of the
building elements and fire-resistance rating.
title: wall construction type
examples:
- value: fire resistive
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall construction type
rank: 196
is_a: core field
slot_uri: MIXS:0000841
multivalued: false
alias: wall_const_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_const_type_enum
wall_finish_mat:
name: wall_finish_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The material utilized to finish the outer most layer of the wall
title: wall finish material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall finish material
rank: 197
is_a: core field
slot_uri: MIXS:0000842
multivalued: false
alias: wall_finish_mat
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_finish_mat_enum
wall_height:
name: wall_height
annotations:
expected_value:
tag: expected_value
value: value
preferred_unit:
tag: preferred_unit
value: centimeter
occurrence:
tag: occurrence
value: '1'
description: The average height of the walls in the sampled room
title: wall height
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall height
rank: 198
is_a: core field
slot_uri: MIXS:0000221
multivalued: false
alias: wall_height
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_loc:
name: wall_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the wall within the room
title: wall location
examples:
- value: north
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall location
rank: 199
is_a: core field
slot_uri: MIXS:0000843
multivalued: false
alias: wall_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_loc_enum
wall_surf_treatment:
name: wall_surf_treatment
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The surface treatment of interior wall
title: wall surface treatment
examples:
- value: paneling
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall surface treatment
rank: 200
is_a: core field
slot_uri: MIXS:0000845
multivalued: false
alias: wall_surf_treatment
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_surf_treatment_enum
wall_texture:
name: wall_texture
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The feel, appearance, or consistency of a wall surface
title: wall texture
examples:
- value: popcorn
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall texture
rank: 201
is_a: core field
slot_uri: MIXS:0000846
multivalued: false
alias: wall_texture
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: wall_texture_enum
wall_thermal_mass:
name: wall_thermal_mass
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: joule per degree Celsius
occurrence:
tag: occurrence
value: '1'
description: The ability of the wall to provide inertia against temperature fluctuations.
Generally this means concrete or concrete block that is either exposed or covered
only with paint
title: wall thermal mass
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall thermal mass
rank: 202
is_a: core field
slot_uri: MIXS:0000222
multivalued: false
alias: wall_thermal_mass
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
wall_water_mold:
name: wall_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on a wall
title: wall signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- wall signs of water/mold
rank: 203
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000844
multivalued: false
alias: wall_water_mold
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
water_feat_size:
name: water_feat_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: square meter
occurrence:
tag: occurrence
value: '1'
description: The size of the water feature
title: water feature size
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- water feature size
rank: 204
is_a: core field
slot_uri: MIXS:0000223
multivalued: false
alias: water_feat_size
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
pattern: ^[-+]?[0-9]*\.?[0-9]+ +\S.*$
water_feat_type:
name: water_feat_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of water feature present within the building being sampled
title: water feature type
examples:
- value: stream
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- water feature type
rank: 205
is_a: core field
slot_uri: MIXS:0000847
multivalued: false
alias: water_feat_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: water_feat_type_enum
weekday:
name: weekday
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The day of the week when sampling occurred
title: weekday
examples:
- value: Sunday
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- weekday
rank: 206
is_a: core field
slot_uri: MIXS:0000848
multivalued: false
alias: weekday
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: weekday_enum
window_cond:
name: window_cond
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The physical condition of the window at the time of sampling
title: window condition
examples:
- value: rupture
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window condition
rank: 207
is_a: core field
slot_uri: MIXS:0000849
multivalued: false
alias: window_cond
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_cond_enum
window_cover:
name: window_cover
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of window covering
title: window covering
examples:
- value: curtains
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window covering
rank: 208
is_a: core field
slot_uri: MIXS:0000850
multivalued: false
alias: window_cover
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_cover_enum
window_horiz_pos:
name: window_horiz_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The horizontal position of the window on the wall
title: window horizontal position
examples:
- value: middle
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window horizontal position
rank: 209
is_a: core field
slot_uri: MIXS:0000851
multivalued: false
alias: window_horiz_pos
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_horiz_pos_enum
window_loc:
name: window_loc
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The relative location of the window within the room
title: window location
examples:
- value: west
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window location
rank: 210
is_a: core field
slot_uri: MIXS:0000852
multivalued: false
alias: window_loc
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_loc_enum
window_mat:
name: window_mat
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of material used to finish a window
title: window material
examples:
- value: wood
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window material
rank: 211
is_a: core field
slot_uri: MIXS:0000853
multivalued: false
alias: window_mat
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_mat_enum
window_open_freq:
name: window_open_freq
annotations:
expected_value:
tag: expected_value
value: value
occurrence:
tag: occurrence
value: '1'
description: The number of times windows are opened per week
title: window open frequency
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window open frequency
rank: 212
is_a: core field
slot_uri: MIXS:0000246
multivalued: false
alias: window_open_freq
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_size:
name: window_size
annotations:
expected_value:
tag: expected_value
value: measurement value
preferred_unit:
tag: preferred_unit
value: inch, meter
occurrence:
tag: occurrence
value: '1'
description: The window's length and width
title: window area/size
examples:
- value: ''
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window area/size
rank: 213
is_a: core field
string_serialization: '{float} {unit} x {float} {unit}'
slot_uri: MIXS:0000224
multivalued: false
alias: window_size
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_status:
name: window_status
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Defines whether the windows were open or closed during environmental
testing
title: window status
examples:
- value: open
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window status
rank: 214
is_a: core field
string_serialization: '[closed|open]'
slot_uri: MIXS:0000855
multivalued: false
alias: window_status
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
window_type:
name: window_type
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The type of windows
title: window type
examples:
- value: fixed window
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window type
rank: 215
is_a: core field
slot_uri: MIXS:0000856
multivalued: false
alias: window_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_type_enum
window_vert_pos:
name: window_vert_pos
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: The vertical position of the window on the wall
title: window vertical position
examples:
- value: middle
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window vertical position
rank: 216
is_a: core field
slot_uri: MIXS:0000857
multivalued: false
alias: window_vert_pos
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: window_vert_pos_enum
window_water_mold:
name: window_water_mold
annotations:
expected_value:
tag: expected_value
value: enumeration
occurrence:
tag: occurrence
value: '1'
description: Signs of the presence of mold or mildew on the window.
title: window signs of water/mold
examples:
- value: no presence of mold visible
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- window signs of water/mold
rank: 217
is_a: core field
string_serialization: '[presence of mold visible|no presence of mold visible]'
slot_uri: MIXS:0000854
multivalued: false
alias: window_water_mold
owner: BuiltEnvInterface
domain_of:
- Biosample
- BuiltEnvInterface
slot_group: mixs_core_section
range: string
analysis_type:
name: analysis_type
description: Select all the data types associated or available for this biosample
title: analysis/data type
examples:
- value: metagenomics; metabolomics; proteomics
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- MIxS:investigation_type
rank: 3
multivalued: true
alias: analysis_type
owner: BuiltEnvInterface
domain_of:
- Biosample
- DhMultiviewCommonColumnsMixin
slot_group: sample_id_section
range: AnalysisTypeEnum
required: true
recommended: false
samp_name:
name: samp_name
annotations:
expected_value:
tag: expected_value
value: text
description: A local identifier or name that for the material sample collected.
Refers to the original material collected or to any derived sub-samples.
title: sample name
comments:
- It can have any format, but we suggest that you make it concise, unique and
consistent within your lab, and as informative as possible.
examples:
- value: Rock core CB1178(5-6) from NSW
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- sample name
rank: 1
is_a: investigation field
string_serialization: '{text}'
slot_uri: MIXS:0001107
multivalued: false
identifier: true
alias: samp_name
owner: BuiltEnvInterface
domain_of:
- Biosample
- DhMultiviewCommonColumnsMixin
slot_group: sample_id_section
range: string
required: true
source_mat_id:
name: source_mat_id
description: A globally unique identifier assigned to the biological sample.
title: source material identifier
todos:
- Currently, the comments say to use UUIDs. However, if we implement assigning
NMDC identifiers with the minter we dont need to require a GUID. It can be an
optional field to fill out only if they already have a resolvable ID.
- Currently, the comments say to use UUIDs. However, if we implement assigning
NMDC identifiers with the minter we dont need to require a GUID. It can be an
optional field to fill out only if they already have a resolvable ID.
notes:
- The source material IS the Globally Unique ID
comments:
- Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn),
NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These
IDs enable linking to derived analytes and subsamples. If you have not assigned
FAIR identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).
- Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn),
NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These
IDs enable linking to derived analytes and subsamples. If you have not assigned
FAIR identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).
examples:
- value: IGSN:AU1243
- value: UUID:24f1467a-40f4-11ed-b878-0242ac120002
from_schema: https://w3id.org/nmdc/nmdc
rank: 2
is_a: nucleic acid sequence source field
string_serialization: '{text}:{text}'
slot_uri: MIXS:0000026
multivalued: false
alias: source_mat_id
owner: BuiltEnvInterface
domain_of:
- Biosample
- DhMultiviewCommonColumnsMixin
slot_group: sample_id_section
range: string
pattern: '[^\:\n\r]+\:[^\:\n\r]+'