Class: Hcr Cores (HcrCoresInterface)

name: HcrCoresInterface
annotations:
  excel_worksheet_name:
    tag: excel_worksheet_name
    value: hcr core
description: hcr_cores dh_interface
title: Hcr Cores
from_schema: https://example.com/nmdc_submission_schema
is_a: DhInterface
mixins:
- DhMultiviewCommonColumnsMixin
slots:
- additional_info
- alkalinity
- alkalinity_method
- ammonium
- api
- aromatics_pc
- asphaltenes_pc
- basin
- benzene
- calcium
- chem_administration
- chloride
- collection_date
- density
- depos_env
- depth
- diss_carb_dioxide
- diss_inorg_carb
- diss_inorg_phosp
- diss_iron
- diss_org_carb
- diss_oxygen_fluid
- ecosystem
- ecosystem_category
- ecosystem_subtype
- ecosystem_type
- elev
- env_broad_scale
- env_local_scale
- env_medium
- ethylbenzene
- experimental_factor
- field
- geo_loc_name
- hc_produced
- hcr
- hcr_fw_salinity
- hcr_geol_age
- hcr_pressure
- hcr_temp
- lat_lon
- lithology
- magnesium
- nitrate
- nitrite
- org_count_qpcr_info
- organism_count
- owc_tvdss
- oxy_stat_samp
- permeability
- ph
- ph_meth
- porosity
- potassium
- pour_point
- pressure
- reservoir
- resins_pc
- salinity
- samp_collec_device
- samp_collec_method
- samp_mat_process
- samp_md
- samp_size
- samp_store_dur
- samp_store_loc
- samp_store_temp
- samp_subtype
- samp_transport_cond
- samp_tvdss
- samp_type
- samp_well_name
- sample_link
- saturates_pc
- size_frac
- sodium
- specific_ecosystem
- sr_dep_env
- sr_geol_age
- sr_kerog_type
- sr_lithology
- sulfate
- sulfate_fw
- sulfide
- suspend_solids
- tan
- temp
- toluene
- tot_iron
- tot_nitro
- tot_phosp
- tot_sulfur
- tvdss_of_hcr_press
- tvdss_of_hcr_temp
- vfa
- vfa_fw
- viscosity
- win
- xylene
slot_usage:
  depth:
    name: depth
    examples:
    - value: 0 - 0.1
    - value: '1'
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(\s*-\s*[-+]?[0-9]*\.?[0-9]+)?$
    structured_pattern:
      syntax: ^{float}(\s*-\s*{float})?$
      interpolated: true
  ecosystem:
    name: ecosystem
    range: EcosystemEnum
  ecosystem_category:
    name: ecosystem_category
    range: EcosystemCategoryEnum
  ecosystem_subtype:
    name: ecosystem_subtype
    range: EcosystemSubtypeEnum
  ecosystem_type:
    name: ecosystem_type
    range: EcosystemTypeEnum
  elev:
    name: elev
    required: true
  env_local_scale:
    name: env_local_scale
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[ENVO:\d{7,8}\]$
    structured_pattern:
      syntax: ^{termLabel} \[ENVO:\d{7,8}\]$
      interpolated: true
  env_medium:
    name: env_medium
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[ENVO:\d{7,8}\]$
    structured_pattern:
      syntax: ^{termLabel} \[ENVO:\d{7,8}\]$
      interpolated: true
  lat_lon:
    name: lat_lon
    required: true
  samp_store_temp:
    name: samp_store_temp
    required: true
  specific_ecosystem:
    name: specific_ecosystem
    range: SpecificEcosystemEnum

name: HcrCoresInterface
annotations:
  excel_worksheet_name:
    tag: excel_worksheet_name
    value: hcr core
description: hcr_cores dh_interface
title: Hcr Cores
from_schema: https://example.com/nmdc_submission_schema
is_a: DhInterface
mixins:
- DhMultiviewCommonColumnsMixin
slot_usage:
  depth:
    name: depth
    examples:
    - value: 0 - 0.1
    - value: '1'
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(\s*-\s*[-+]?[0-9]*\.?[0-9]+)?$
    structured_pattern:
      syntax: ^{float}(\s*-\s*{float})?$
      interpolated: true
  ecosystem:
    name: ecosystem
    range: EcosystemEnum
  ecosystem_category:
    name: ecosystem_category
    range: EcosystemCategoryEnum
  ecosystem_subtype:
    name: ecosystem_subtype
    range: EcosystemSubtypeEnum
  ecosystem_type:
    name: ecosystem_type
    range: EcosystemTypeEnum
  elev:
    name: elev
    required: true
  env_local_scale:
    name: env_local_scale
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[ENVO:\d{7,8}\]$
    structured_pattern:
      syntax: ^{termLabel} \[ENVO:\d{7,8}\]$
      interpolated: true
  env_medium:
    name: env_medium
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[ENVO:\d{7,8}\]$
    structured_pattern:
      syntax: ^{termLabel} \[ENVO:\d{7,8}\]$
      interpolated: true
  lat_lon:
    name: lat_lon
    required: true
  samp_store_temp:
    name: samp_store_temp
    required: true
  specific_ecosystem:
    name: specific_ecosystem
    range: SpecificEcosystemEnum
attributes:
  additional_info:
    name: additional_info
    description: Information that doesn't fit anywhere else. Can also be used to propose
      new entries for fields with controlled vocabulary
    title: additional info
    from_schema: https://example.com/nmdc_submission_schema
    rank: 290
    keywords:
    - information
    slot_uri: MIXS:0000300
    alias: additional_info
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
  alkalinity:
    name: alkalinity
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milliequivalent per liter, milligram per liter
      storage_units:
        tag: storage_units
        value: meq/L|mg/L
    description: Alkalinity, the ability of a solution to neutralize acids to the
      equivalence point of carbonate or bicarbonate
    title: alkalinity
    comments:
    - 'Value must be reported in one of the following units: meq/L, mg/L. Provide
      the numeric portion followed by a space and the unit.'
    examples:
    - value: 50 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 1
    keywords:
    - alkalinity
    slot_uri: MIXS:0000421
    alias: alkalinity
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  alkalinity_method:
    name: alkalinity_method
    description: Method used for alkalinity measurement
    title: alkalinity method
    examples:
    - value: titration
    from_schema: https://example.com/nmdc_submission_schema
    rank: 218
    keywords:
    - alkalinity
    - method
    slot_uri: MIXS:0000298
    alias: alkalinity_method
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
  ammonium:
    name: ammonium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|umol/L'
    description: Concentration of ammonium in the sample
    title: ammonium
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, umol/L.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 1.5 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 4
    slot_uri: MIXS:0000427
    alias: ammonium
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  api:
    name: api
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degrees API
      units_alignment_excuse:
        tag: units_alignment_excuse
        value: non_ucum_unit
    description: 'API gravity is a measure of how heavy or light a petroleum liquid
      is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g.
      31.1   API)'
    title: API gravity
    examples:
    - value: 31.1 API
    from_schema: https://example.com/nmdc_submission_schema
    rank: 291
    slot_uri: MIXS:0000157
    alias: api
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  aromatics_pc:
    name: aromatics_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: aromatics wt%
    from_schema: https://example.com/nmdc_submission_schema
    rank: 292
    slot_uri: MIXS:0000133
    alias: aromatics_pc
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  asphaltenes_pc:
    name: asphaltenes_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: asphaltenes wt%
    from_schema: https://example.com/nmdc_submission_schema
    rank: 293
    slot_uri: MIXS:0000135
    alias: asphaltenes_pc
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  basin:
    name: basin
    description: Name of the basin (e.g. Campos)
    title: basin name
    examples:
    - value: Campos
    from_schema: https://example.com/nmdc_submission_schema
    rank: 294
    slot_uri: MIXS:0000290
    alias: basin
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
  benzene:
    name: benzene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Concentration of benzene in the sample
    title: benzene
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 295
    slot_uri: MIXS:0000153
    alias: benzene
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  calcium:
    name: calcium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, micromole per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|umol/L|mg/kg'
    description: Concentration of calcium in the sample
    title: calcium
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, umol/L,
      mg/kg. Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 0.2 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 9
    slot_uri: MIXS:0000432
    alias: calcium
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  chem_administration:
    name: chem_administration
    annotations:
      Expected_value:
        tag: Expected_value
        value: CHEBI;timestamp
    description: List of chemical compounds administered to the host or site where
      sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can
      include multiple compounds. For chemical entities of biological interest ontology
      (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    title: chemical administration
    examples:
    - value: agar [CHEBI:2509];2018-05-11|agar [CHEBI:2509];2018-05-22
    - value: agar [CHEBI:2509];2018-05
    from_schema: https://example.com/nmdc_submission_schema
    rank: 17
    keywords:
    - administration
    string_serialization: '{termLabel} [{termID}];{timestamp}'
    slot_uri: MIXS:0000751
    alias: chem_administration
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
    recommended: true
    multivalued: false
    pattern: ^(\S+.*\S+ \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?\|)*(\S+.*\S+
      \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?)$
  chloride:
    name: chloride
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Concentration of chloride in the sample
    title: chloride
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    examples:
    - value: 5000 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 10
    slot_uri: MIXS:0000429
    alias: chloride
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  collection_date:
    name: collection_date
    description: The date of sampling
    title: collection date
    examples:
    - value: '2021-04-15'
    - value: 2021-04
    - value: '2021'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 3
    keywords:
    - date
    slot_uri: MIXS:0000011
    alias: collection_date
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
    required: true
    pattern: ^[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?$
  density:
    name: density
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: gram per cubic meter, gram per cubic centimeter
      storage_units:
        tag: storage_units
        value: g/cm3|g/m3|kg/m3
    description: Density of the sample, which is its mass per unit volume (aka volumetric
      mass density)
    title: density
    comments:
    - 'Value must be reported in one of the following units: g/cm3, g/m3, kg/m3. Provide
      the numeric portion followed by a space and the unit.'
    examples:
    - value: 1000 kg/m3
    from_schema: https://example.com/nmdc_submission_schema
    rank: 12
    keywords:
    - density
    slot_uri: MIXS:0000435
    alias: density
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  depos_env:
    name: depos_env
    description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment).
      If "other" is specified, please propose entry in "additional info" field
    title: depositional environment
    from_schema: https://example.com/nmdc_submission_schema
    rank: 304
    keywords:
    - environment
    slot_uri: MIXS:0000992
    alias: depos_env
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: DeposEnvEnum
    recommended: true
  depth:
    name: depth
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: meter
      storage_units:
        tag: storage_units
        value: m
    description: The vertical distance below local surface. For sediment or soil samples
      depth is measured from sediment or soil surface, respectively. Depth can be
      reported as an interval for subsurface samples
    title: depth, meters
    comments:
    - All depths must be reported in meters. Provide the numerical portion only.
    examples:
    - value: 0 - 0.1
    - value: '1'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 9
    keywords:
    - depth
    slot_uri: MIXS:0000018
    alias: depth
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(\s*-\s*[-+]?[0-9]*\.?[0-9]+)?$
    structured_pattern:
      syntax: ^{float}(\s*-\s*{float})?$
      interpolated: true
    unit:
      ucum_code: m
  diss_carb_dioxide:
    name: diss_carb_dioxide
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L|umol/L
    description: Concentration of dissolved carbon dioxide in the sample or liquid
      portion of the sample
    title: dissolved carbon dioxide
    comments:
    - 'Value must be reported in one of the following units: mg/L, umol/L. Provide
      the numeric portion followed by a space and the unit.'
    examples:
    - value: 5 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 14
    keywords:
    - carbon
    - dissolved
    slot_uri: MIXS:0000436
    alias: diss_carb_dioxide
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_inorg_carb:
    name: diss_inorg_carb
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: microgram per liter, milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|ug/L|umol/kg'
    description: Dissolved inorganic carbon concentration in the sample, typically
      measured after filtering the sample using a 0.45 micrometer filter
    title: dissolved inorganic carbon
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, ug/L, umol/kg.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 2059 umol/kg
    from_schema: https://example.com/nmdc_submission_schema
    rank: 16
    keywords:
    - carbon
    - dissolved
    - inorganic
    slot_uri: MIXS:0000434
    alias: diss_inorg_carb
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_inorg_phosp:
    name: diss_inorg_phosp
    annotations:
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|ug/L|umol/L'
    description: Concentration of dissolved inorganic phosphorus in the sample
    title: dissolved inorganic phosphorus
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, ug/L, umol/L.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 56.5 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 224
    keywords:
    - dissolved
    - inorganic
    - phosphorus
    slot_uri: MIXS:0000106
    alias: diss_inorg_phosp
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_iron:
    name: diss_iron
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L
    description: Concentration of dissolved iron in the sample
    title: dissolved iron
    comments:
    - Value must be reported in mg/L. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 305
    keywords:
    - dissolved
    slot_uri: MIXS:0000139
    alias: diss_iron
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: mg/L
  diss_org_carb:
    name: diss_org_carb
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L|umol/L|ug/L
    description: Concentration of dissolved organic carbon in the sample, liquid portion
      of the sample, or aqueous phase of the fluid
    title: dissolved organic carbon
    comments:
    - 'Value must be reported in one of the following units: mg/L, umol/L, ug/L. Provide
      the numeric portion followed by a space and the unit.'
    examples:
    - value: 197 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 17
    keywords:
    - carbon
    - dissolved
    - organic
    slot_uri: MIXS:0000433
    alias: diss_org_carb
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_oxygen_fluid:
    name: diss_oxygen_fluid
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per kilogram, milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L|umol/kg
    description: Concentration of dissolved oxygen in the oil field produced fluids
      as it contributes to oxygen-corrosion and microbial activity (e.g. Mic)
    title: dissolved oxygen in fluids
    comments:
    - 'Value must be reported in one of the following units: mg/L, umol/kg. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 306
    keywords:
    - dissolved
    - oxygen
    slot_uri: MIXS:0000438
    alias: diss_oxygen_fluid
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ecosystem:
    name: ecosystem
    description: An ecosystem is a combination of a physical environment (abiotic
      factors) and all the organisms (biotic factors) that interact with this environment.
      Ecosystem is in position 1/5 in a GOLD path.
    comments:
    - The abiotic factors play a profound role on the type and composition of organisms
      in a given environment. The GOLD Ecosystem at the top of the five-level classification
      system is aimed at capturing the broader environment from which an organism
      or environmental sample is collected. The three broad groups under Ecosystem
      are Environmental, Host-associated, and Engineered. They represent samples collected
      from a natural environment or from another organism or from engineered environments
      like bioreactors respectively.
    from_schema: https://example.com/nmdc_submission_schema
    see_also:
    - https://gold.jgi.doe.gov/help
    rank: 9
    is_a: gold_path_field
    alias: ecosystem
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: EcosystemEnum
    recommended: true
  ecosystem_category:
    name: ecosystem_category
    description: Ecosystem categories represent divisions within the ecosystem based
      on specific characteristics of the environment from where an organism or sample
      is isolated. Ecosystem category is in position 2/5 in a GOLD path.
    comments:
    - The Environmental ecosystem (for example) is divided into Air, Aquatic and Terrestrial.
      Ecosystem categories for Host-associated samples can be individual hosts or
      phyla and for engineered samples it may be manipulated environments like bioreactors,
      solid waste etc.
    from_schema: https://example.com/nmdc_submission_schema
    see_also:
    - https://gold.jgi.doe.gov/help
    rank: 10
    is_a: gold_path_field
    alias: ecosystem_category
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: EcosystemCategoryEnum
    recommended: true
  ecosystem_subtype:
    name: ecosystem_subtype
    description: Ecosystem subtypes represent further subdivision of Ecosystem types
      into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD
      path.
    comments:
    - Ecosystem Type Marine (Environmental -> Aquatic -> Marine) is further divided
      (for example) into Intertidal zone, Coastal, Pelagic, Intertidal zone etc. in
      the Ecosystem subtype category.
    from_schema: https://example.com/nmdc_submission_schema
    see_also:
    - https://gold.jgi.doe.gov/help
    rank: 12
    is_a: gold_path_field
    alias: ecosystem_subtype
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: EcosystemSubtypeEnum
    recommended: true
  ecosystem_type:
    name: ecosystem_type
    description: Ecosystem types represent things having common characteristics within
      the Ecosystem Category. These common characteristics based grouping is still
      broad but specific to the characteristics of a given environment. Ecosystem
      type is in position 3/5 in a GOLD path.
    comments:
    - The Aquatic ecosystem category (for example) may have ecosystem types like Marine
      or Thermal springs etc. Ecosystem category Air may have Indoor air or Outdoor
      air as different Ecosystem Types. In the case of Host-associated samples, ecosystem
      type can represent Respiratory system, Digestive system, Roots etc.
    from_schema: https://example.com/nmdc_submission_schema
    see_also:
    - https://gold.jgi.doe.gov/help
    rank: 11
    is_a: gold_path_field
    alias: ecosystem_type
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: EcosystemTypeEnum
    recommended: true
  elev:
    name: elev
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: meter
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit
    title: elevation, meters
    comments:
    - All elevations must be reported in meters. Provide the numerical portion only.
    - Please use https://www.advancedconverter.com/map-tools/find-altitude-by-coordinates,
      if needed, to help estimate the elevation based on latitude and longitude coordinates.
    examples:
    - value: '225'
    - value: '0'
    - value: '1250'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 6
    keywords:
    - elevation
    slot_uri: MIXS:0000093
    alias: elev
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: float
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: m
  env_broad_scale:
    name: env_broad_scale
    annotations:
      tooltip:
        tag: tooltip
        value: The biome or major environmental system where the sample or specimen
          originated. Choose values from subclasses of the 'biome' class [ENVO:00000428]
          in the Environment Ontology (ENVO). For host-associated or plant-associated
          samples, use terms from the UBERON or Plant Ontology to describe the broad
          anatomical or morphological context
    description: 'In this field, report which major environmental system your sample
      or specimen came from. The systems identified should have a coarse spatial grain,
      to provide the general environmental context of where the sampling was done
      (e.g. were you in the desert or a rainforest?). We recommend using subclasses
      of ENVO''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. Format
      (one term): termLabel [termID], Format (multiple terms): termLabel [termID]|termLabel
      [termID]|termLabel [termID]. Example: Annotating a water sample from the photic
      zone in middle of the Atlantic Ocean, consider: oceanic epipelagic zone biome
      [ENVO:01000033]. Example: Annotating a sample from the Amazon rainforest consider:
      tropical moist broadleaf forest biome [ENVO:01000228]. If needed, request new
      terms on the ENVO tracker, identified here: http://www.obofoundry.org/ontology/envo.html'
    title: broad-scale environmental context
    examples:
    - value: oceanic epipelagic zone biome [ENVO:01000035]
    from_schema: https://example.com/nmdc_submission_schema
    rank: 6
    keywords:
    - context
    - environmental
    is_a: mixs_env_triad_field
    slot_uri: MIXS:0000012
    alias: env_broad_scale
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[ENVO:\d{7,8}\]$
    structured_pattern:
      syntax: ^{termLabel} \[ENVO:\d{7,8}\]$
      interpolated: true
  env_local_scale:
    name: env_local_scale
    annotations:
      Expected_value:
        tag: Expected_value
        value: Environmental entities having causal influences upon the entity at
          time of sampling
      tooltip:
        tag: tooltip
        value: The specific environmental entities or features near the sample or
          specimen that significantly influence its characteristics or composition.
          These entities are typically smaller in scale than the broad environmental
          context. Values for this field should be countable, material nouns and must
          be chosen from subclasses of BFO:0000040 (material entity) that appear in
          the Environment Ontology (ENVO). For host-associated or plant-associated
          samples, use terms from the UBERON or Plant Ontology to describe specific
          anatomical structures or plant parts.
    description: 'Report the entity or entities which are in the sample or specimen
      s local vicinity and which you believe have significant causal influences on
      your sample or specimen. We recommend using EnvO terms which are of smaller
      spatial grain than your entry for env_broad_scale. Terms, such as anatomical
      sites, from other OBO Library ontologies which interoperate with EnvO (e.g.
      UBERON) are accepted in this field. EnvO documentation about how to use the
      field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: local environmental context
    examples:
    - value: canopy [ENVO:00000047]
    - value: herb and fern layer [ENVO:01000337]
    - value: understory [ENVO:01000335]
    - value: shrub layer [ENVO:01000336]
    from_schema: https://example.com/nmdc_submission_schema
    rank: 7
    keywords:
    - context
    - environmental
    is_a: mixs_env_triad_field
    slot_uri: MIXS:0000013
    alias: env_local_scale
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[ENVO:\d{7,8}\]$
    structured_pattern:
      syntax: ^{termLabel} \[ENVO:\d{7,8}\]$
      interpolated: true
  env_medium:
    name: env_medium
    annotations:
      tooltip:
        tag: tooltip
        value: The predominant environmental material or substrate that directly surrounds
          or hosts the sample or specimen at the time of sampling. Choose values from
          subclasses of the 'environmental material' class [ENVO:00010483] in the
          Environment Ontology (ENVO). Values for this field should be measurable
          or mass material nouns, representing continuous environmental materials.
          For host-associated or plant-associated samples, use terms from the UBERON
          or Plant Ontology to indicate a tissue, organ, or plant structure
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top)'
    title: environmental medium
    examples:
    - value: soil [ENVO:00001998]
    from_schema: https://example.com/nmdc_submission_schema
    rank: 8
    keywords:
    - environmental
    is_a: mixs_env_triad_field
    slot_uri: MIXS:0000014
    alias: env_medium
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[ENVO:\d{7,8}\]$
    structured_pattern:
      syntax: ^{termLabel} \[ENVO:\d{7,8}\]$
      interpolated: true
  ethylbenzene:
    name: ethylbenzene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Concentration of ethylbenzene in the sample
    title: ethylbenzene
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 309
    slot_uri: MIXS:0000155
    alias: ethylbenzene
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  experimental_factor:
    name: experimental_factor
    annotations:
      Expected_value:
        tag: Expected_value
        value: text or EFO and/or OBI
    description: Variable aspects of an experiment design that can be used to describe
      an experiment, or set of experiments, in an increasingly detailed manner. This
      field accepts ontology terms from Experimental Factor Ontology (EFO) and/or
      Ontology for Biomedical Investigations (OBI)
    title: experimental factor
    examples:
    - value: time series design [EFO:0001779]
    from_schema: https://example.com/nmdc_submission_schema
    rank: 12
    keywords:
    - experimental
    - factor
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000008
    alias: experimental_factor
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_section
    range: string
    multivalued: false
    pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
  field:
    name: field
    description: Name of the hydrocarbon field (e.g. Albacora)
    title: field name
    from_schema: https://example.com/nmdc_submission_schema
    rank: 310
    slot_uri: MIXS:0000291
    alias: field
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
  geo_loc_name:
    name: geo_loc_name
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name.
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 4
    keywords:
    - geographic
    - location
    slot_uri: MIXS:0000010
    alias: geo_loc_name
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
    required: true
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{country}: {region}, {specific_location}$'
      interpolated: true
      partial_match: true
  hc_produced:
    name: hc_produced
    description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate,
      etc). If "other" is specified, please propose entry in "additional info" field
    title: hydrocarbon type produced
    examples:
    - value: Gas
    from_schema: https://example.com/nmdc_submission_schema
    rank: 313
    keywords:
    - hydrocarbon
    - type
    slot_uri: MIXS:0000989
    alias: hc_produced
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: HcProducedEnum
  hcr:
    name: hcr
    description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR
      defined as a natural environmental feature containing large amounts of hydrocarbons
      at high concentrations potentially suitable for commercial exploitation. This
      term should not be confused with the Hydrocarbon Occurrence term which also
      includes hydrocarbon-rich environments with currently limited commercial interest
      such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose
      entry in "additional info" field
    title: hydrocarbon resource type
    examples:
    - value: Oil Sand
    from_schema: https://example.com/nmdc_submission_schema
    rank: 314
    keywords:
    - hydrocarbon
    - resource
    - type
    slot_uri: MIXS:0000988
    alias: hcr
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: HcrEnum
  hcr_fw_salinity:
    name: hcr_fw_salinity
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L
    description: Original formation water salinity (prior to secondary recovery e.g.
      Waterflooding) expressed as TDS
    title: formation water salinity
    comments:
    - Value must be reported in mg/L. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 315
    keywords:
    - salinity
    - water
    slot_uri: MIXS:0000406
    alias: hcr_fw_salinity
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: mg/L
  hcr_geol_age:
    name: hcr_geol_age
    description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
      If "other" is specified, please propose entry in "additional info" field'
    title: hydrocarbon resource geological age
    examples:
    - value: Silurian
    from_schema: https://example.com/nmdc_submission_schema
    rank: 316
    keywords:
    - age
    - hydrocarbon
    - resource
    slot_uri: MIXS:0000993
    alias: hcr_geol_age
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: GeolAgeEnum
    recommended: true
  hcr_pressure:
    name: hcr_pressure
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: atmosphere, kilopascal
    description: Original pressure of the hydrocarbon resource
    title: hydrocarbon resource original pressure
    from_schema: https://example.com/nmdc_submission_schema
    rank: 317
    keywords:
    - hydrocarbon
    - pressure
    - resource
    slot_uri: MIXS:0000395
    alias: hcr_pressure
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  hcr_temp:
    name: hcr_temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
    description: Original temperature of the hydrocarbon resource
    title: hydrocarbon resource original temperature
    examples:
    - value: 150-295 degree Celsius
    from_schema: https://example.com/nmdc_submission_schema
    rank: 318
    keywords:
    - hydrocarbon
    - resource
    - temperature
    slot_uri: MIXS:0000393
    alias: hcr_temp
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  lat_lon:
    name: lat_lon
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees, limited to 8 decimal
      points, and in WGS84 system
    title: geographic location (latitude and longitude)
    notes:
    - This is currently a required field but it's not clear if this should be required
      for human hosts
    examples:
    - value: 50.586825 6.408977
    from_schema: https://example.com/nmdc_submission_schema
    rank: 5
    keywords:
    - geographic
    - location
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
    required: true
    pattern: ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$
    structured_pattern:
      syntax: ^{lat} {lon}$
      interpolated: true
      partial_match: true
  lithology:
    name: lithology
    description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination).
      If "other" is specified, please propose entry in "additional info" field'
    title: lithology
    examples:
    - value: Volcanic
    from_schema: https://example.com/nmdc_submission_schema
    rank: 336
    keywords:
    - lithology
    slot_uri: MIXS:0000990
    alias: lithology
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: LithologyEnum
    recommended: true
  magnesium:
    name: magnesium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: mole per liter, milligram per liter, parts per million, micromole per
          kilogram
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|mol/L|umol/kg|mg/kg'
    description: Concentration of magnesium in the sample
    title: magnesium
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, mol/L, umol/kg,
      mg/kg. Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 52.8 umol/kg
    from_schema: https://example.com/nmdc_submission_schema
    rank: 21
    slot_uri: MIXS:0000431
    alias: magnesium
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  nitrate:
    name: nitrate
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|umol/L'
    description: Concentration of nitrate in the sample
    title: nitrate
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, umol/L.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 65 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 26
    keywords:
    - nitrate
    slot_uri: MIXS:0000425
    alias: nitrate
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  nitrite:
    name: nitrite
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|umol/L'
    description: Concentration of nitrite in the sample
    title: nitrite
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, umol/L.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 0.5 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 27
    keywords:
    - nitrite
    slot_uri: MIXS:0000426
    alias: nitrite
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  org_count_qpcr_info:
    name: org_count_qpcr_info
    annotations:
      Expected_value:
        tag: Expected_value
        value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial
          denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
          elongation:degrees_minutes; total cycles
      Preferred_unit:
        tag: Preferred_unit
        value: number of cells per gram (or ml or cm^2)
    description: 'If qpcr was used for the cell count, the target gene name, the primer
      sequence and the cycling conditions should also be provided. (Example: 16S rrna;
      FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
      annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
      30 cycles)'
    title: organism count qPCR information
    from_schema: https://example.com/nmdc_submission_schema
    rank: 337
    keywords:
    - count
    - information
    - organism
    string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes; total cycles'
    slot_uri: MIXS:0000099
    alias: org_count_qpcr_info
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
  organism_count:
    name: organism_count
    annotations:
      Expected_value:
        tag: Expected_value
        value: organism name;measurement value;enumeration
      storage_units:
        tag: storage_units
        value: '1'
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    examples:
    - value: total prokaryotes;3.5e7 cells/mL;qPCR
    from_schema: https://example.com/nmdc_submission_schema
    rank: 30
    keywords:
    - count
    - organism
    string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
    slot_uri: MIXS:0000103
    alias: organism_count
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    multivalued: false
    pattern: ^(\S+.*\S+;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? \S+.*\S+;(qPCR|ATP|MPN|other)\|)*(\S+.*\S+;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      \S+.*\S+;(qPCR|ATP|MPN|other))$
  owc_tvdss:
    name: owc_tvdss
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: meter
      storage_units:
        tag: storage_units
        value: m
    description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS)
    title: oil water contact depth
    comments:
    - Value must be reported in m. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 339
    keywords:
    - depth
    - oil
    - water
    slot_uri: MIXS:0000405
    alias: owc_tvdss
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: m
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    examples:
    - value: aerobic
    from_schema: https://example.com/nmdc_submission_schema
    rank: 25
    keywords:
    - oxygen
    - sample
    - status
    slot_uri: MIXS:0000753
    alias: oxy_stat_samp
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_section
    range: OxyStatSampEnum
  permeability:
    name: permeability
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value range
      Preferred_unit:
        tag: Preferred_unit
        value: mD
    description: 'Measure of the ability of a hydrocarbon resource to allow fluids
      to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))'
    title: permeability
    from_schema: https://example.com/nmdc_submission_schema
    rank: 340
    string_serialization: '{integer} - {integer} {unit}'
    slot_uri: MIXS:0000404
    alias: permeability
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: string
  ph:
    name: ph
    description: pH measurement of the sample, or liquid portion of sample, or aqueous
      phase of the fluid
    title: pH
    examples:
    - value: '7.2'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 27
    keywords:
    - ph
    slot_uri: MIXS:0001001
    alias: ph
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: float
    recommended: true
    minimum_value: 0
    maximum_value: 14
  ph_meth:
    name: ph_meth
    description: Reference or method used in determining pH
    title: pH method
    comments:
    - This can include a link to the instrument used or a citation for the method.
    examples:
    - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB
    - value: https://doi.org/10.2136/sssabookser5.3.c16
    from_schema: https://example.com/nmdc_submission_schema
    rank: 41
    keywords:
    - method
    - ph
    slot_uri: MIXS:0001106
    alias: ph_meth
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_section
    range: string
  porosity:
    name: porosity
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value or range
      Preferred_unit:
        tag: Preferred_unit
        value: percentage
    description: Porosity of deposited sediment is volume of voids divided by the
      total volume of sample
    title: porosity
    from_schema: https://example.com/nmdc_submission_schema
    rank: 37
    keywords:
    - porosity
    string_serialization: '{float} - {float} {unit}'
    slot_uri: MIXS:0000211
    alias: porosity
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - SedimentInterface
    slot_group: mixs_core_section
    range: string
  potassium:
    name: potassium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|mg/kg'
    description: Concentration of potassium in the sample
    title: potassium
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, mg/kg. Provide
      the numeric portion followed by a space and the unit.'
    examples:
    - value: 463 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 38
    slot_uri: MIXS:0000430
    alias: potassium
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  pour_point:
    name: pour_point
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
      storage_units:
        tag: storage_units
        value: Cel
    description: 'Temperature at which a liquid becomes semi solid and loses its flow
      characteristics. In crude oil a high  pour point  is generally associated with
      a high paraffin content, typically found in crude deriving from a larger proportion
      of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
    title: pour point
    comments:
    - Value must be reported in degrees Celsius. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 341
    slot_uri: MIXS:0000127
    alias: pour_point
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      descriptive_name: degrees Celsius
      ucum_code: Cel
  pressure:
    name: pressure
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: atmosphere
      storage_units:
        tag: storage_units
        value: atm
    description: Pressure to which the sample is subject to, in atmospheres
    title: pressure
    comments:
    - Value must be reported in atm. Provide the numeric portion only.
    examples:
    - value: '50'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 39
    keywords:
    - pressure
    slot_uri: MIXS:0000412
    alias: pressure
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: atm
  reservoir:
    name: reservoir
    description: Name of the reservoir (e.g. Carapebus)
    title: reservoir name
    from_schema: https://example.com/nmdc_submission_schema
    rank: 347
    slot_uri: MIXS:0000303
    alias: reservoir
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
  resins_pc:
    name: resins_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: resins wt%
    from_schema: https://example.com/nmdc_submission_schema
    rank: 348
    slot_uri: MIXS:0000134
    alias: resins_pc
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  salinity:
    name: salinity
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: practical salinity unit, percentage
      storage_units:
        tag: storage_units
        value: '%|mg/L'
    description: The total concentration of all dissolved salts in a liquid or solid
      sample. While salinity can be measured by a complete chemical analysis, this
      method is difficult and time consuming. More often, it is instead derived from
      the conductivity measurement. This is known as practical salinity. These derivations
      compare the specific conductance of the sample to a salinity standard such as
      seawater
    title: salinity
    comments:
    - 'Value must be reported in one of the following units: %, mg/L. Provide the
      numeric portion followed by a space and the unit.'
    examples:
    - value: 70 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 54
    keywords:
    - salinity
    slot_uri: MIXS:0000183
    alias: salinity
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_collec_device:
    name: samp_collec_device
    annotations:
      Expected_value:
        tag: Expected_value
        value: device name
    description: The device used to collect an environmental sample. This field accepts
      terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
      This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)
    title: sample collection device
    comments:
    - Report dimensions and details when applicable
    from_schema: https://example.com/nmdc_submission_schema
    structured_aliases:
      samp_collect_device:
        literal_form: samp_collect_device
        contexts:
        - https://github.com/GenomicsStandardsConsortium/mixs/releases/tag/v6.2.2
    rank: 14
    keywords:
    - device
    - sample
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000002
    alias: samp_collec_device
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
    recommended: true
  samp_collec_method:
    name: samp_collec_method
    description: The method employed for collecting the sample
    title: sample collection method
    comments:
    - This can be a citation or description
    from_schema: https://example.com/nmdc_submission_schema
    structured_aliases:
      samp_collect_method:
        literal_form: samp_collect_method
        contexts:
        - https://github.com/GenomicsStandardsConsortium/mixs/releases/tag/v6.2.2
    rank: 15
    keywords:
    - method
    - sample
    slot_uri: MIXS:0001225
    alias: samp_collec_method
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
  samp_mat_process:
    name: samp_mat_process
    description: A brief description of any processing applied to the sample during
      or after retrieving the sample from environment, or a link to the relevant protocol(s)
      performed
    title: sample material processing
    examples:
    - value: filtering of seawater
    - value: storing samples in ethanol
    from_schema: https://example.com/nmdc_submission_schema
    rank: 12
    keywords:
    - material
    - process
    - sample
    slot_uri: MIXS:0000016
    alias: samp_mat_process
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
  samp_md:
    name: samp_md
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value;enumeration
      Preferred_unit:
        tag: Preferred_unit
        value: meter
      storage_units:
        tag: storage_units
        value: m
    description: In non deviated well, measured depth is equal to the true vertical
      depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated
      wells, the MD is the length of trajectory of the borehole measured from the
      same reference or datum. Common datums used are ground level (GL), drilling
      rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL).
      If "other" is specified, please propose entry in "additional info" field
    title: sample measured depth
    comments:
    - Value must be reported in m. Provide the numeric portion only.
    examples:
    - value: '1534'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 351
    keywords:
    - depth
    - measurement
    - sample
    string_serialization: '{float} {unit};[GL|DF|RT|KB|MSL|other]'
    slot_uri: MIXS:0000413
    alias: samp_md
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: float
    unit:
      ucum_code: m
  samp_size:
    name: samp_size
    annotations:
      storage_units:
        tag: storage_units
        value: L|g|mL|mg
    description: The total amount (volume or mass) of sample collected.
    title: amount or size of sample collected
    comments:
    - 'Value must be reported in one of the following units: L, g, mL, mg. Provide
      the numeric portion followed by a space and the unit.'
    - This refers to the TOTAL amount of sample collected from the experiment. NOT
      the amount sent to each institution or collected for a specific analysis.
    examples:
    - value: 5 g
    - value: 10 mL
    from_schema: https://example.com/nmdc_submission_schema
    rank: 18
    keywords:
    - sample
    - size
    slot_uri: MIXS:0000001
    alias: samp_size
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored. Indicate the duration for
      which the sample was stored written in ISO 8601 format
    title: sample storage duration
    examples:
    - value: P1Y6M
    from_schema: https://example.com/nmdc_submission_schema
    rank: 353
    keywords:
    - duration
    - period
    - sample
    - storage
    slot_uri: MIXS:0000116
    alias: samp_store_dur
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  samp_store_loc:
    name: samp_store_loc
    annotations:
      Expected_value:
        tag: Expected_value
        value: location name
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    examples:
    - value: Freezer no:5
    from_schema: https://example.com/nmdc_submission_schema
    rank: 41
    keywords:
    - location
    - sample
    - storage
    slot_uri: MIXS:0000755
    alias: samp_store_loc
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
  samp_store_temp:
    name: samp_store_temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
      storage_units:
        tag: storage_units
        value: Cel
    description: Temperature at which the sample was stored (degrees are assumed)
    title: sample storage temperature
    comments:
    - Value must be reported in degrees Celsius. Provide the numeric portion only.
    examples:
    - value: '-80'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 7
    keywords:
    - sample
    - storage
    - temperature
    slot_uri: MIXS:0000110
    alias: samp_store_temp
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_modified_section
    range: float
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      descriptive_name: degrees Celsius
      ucum_code: Cel
  samp_subtype:
    name: samp_subtype
    description: Name of sample sub-type. For example if "sample type" is "Produced
      Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified,
      please propose entry in "additional info" field
    title: sample subtype
    examples:
    - value: biofilm
    from_schema: https://example.com/nmdc_submission_schema
    rank: 354
    keywords:
    - sample
    slot_uri: MIXS:0000999
    alias: samp_subtype
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: SampSubtypeEnum
    recommended: true
  samp_transport_cond:
    name: samp_transport_cond
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value;measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: days;degree Celsius
    description: Sample transport duration (in days or hrs) and temperature the sample
      was exposed to (e.g. 5.5 days; 20   C)
    title: sample transport conditions
    examples:
    - value: 5 days;-20 degree Celsius
    from_schema: https://example.com/nmdc_submission_schema
    rank: 355
    keywords:
    - condition
    - sample
    - transport
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000410
    alias: samp_transport_cond
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
  samp_tvdss:
    name: samp_tvdss
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value or measurement value range
      Preferred_unit:
        tag: Preferred_unit
        value: meter
    description: Depth of the sample i.e. The vertical distance between the sea level
      and the sampled position in the subsurface. Depth can be reported as an interval
      for subsurface samples e.g. 1325.75-1362.25 m
    title: sample true vertical depth subsea
    from_schema: https://example.com/nmdc_submission_schema
    rank: 356
    keywords:
    - depth
    - sample
    string_serialization: '{float}-{float} {unit}'
    slot_uri: MIXS:0000409
    alias: samp_tvdss
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
  samp_type:
    name: samp_type
    description: The type of material from which the sample was obtained. For the
      Hydrocarbon package, samples include types like core, rock trimmings, drill
      cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
      produced water, injected water, swabs, etc. For the Food Package, samples are
      usually categorized as food, body products or tissues, or environmental material.
      This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)
    title: sample type
    examples:
    - value: built environment sample [GENEPIO:0001248]
    from_schema: https://example.com/nmdc_submission_schema
    rank: 357
    keywords:
    - sample
    - type
    slot_uri: MIXS:0000998
    alias: samp_type
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  samp_well_name:
    name: samp_well_name
    description: Name of the well (e.g. BXA1123) where sample was taken
    title: sample well name
    from_schema: https://example.com/nmdc_submission_schema
    rank: 358
    keywords:
    - sample
    slot_uri: MIXS:0000296
    alias: samp_well_name
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
  sample_link:
    name: sample_link
    description: A unique identifier to assign parent-child, subsample, or sibling
      samples. This is relevant when a sample or other material was used to generate
      the new sample.
    title: sample linkage
    comments:
    - 'This field allows multiple entries separated by ; (Examples: Soil collected
      from the field will link with the soil used in an incubation. The soil a plant
      was grown in links to the plant sample. An original culture sample was transferred
      to a new vial and generated a new sample)'
    examples:
    - value: igsn:DSJ0284
    from_schema: https://example.com/nmdc_submission_schema
    rank: 5
    string_serialization: '{text}:{text}'
    alias: sample_link
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    - SampIdNewTermsMixin
    slot_group: sample_id_section
    range: string
    recommended: true
    multivalued: false
    pattern: '[^\:\n\r]+\:[^\:\n\r]+'
  saturates_pc:
    name: saturates_pc
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: saturates wt%
    from_schema: https://example.com/nmdc_submission_schema
    rank: 359
    slot_uri: MIXS:0000131
    alias: saturates_pc
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^.*;[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  size_frac:
    name: size_frac
    annotations:
      Expected_value:
        tag: Expected_value
        value: filter size value range
    description: Filtering pore size used in sample preparation
    title: size fraction selected
    examples:
    - value: 0-0.22 micrometer
    from_schema: https://example.com/nmdc_submission_schema
    rank: 285
    keywords:
    - fraction
    - size
    string_serialization: '{float}-{float} {unit}'
    slot_uri: MIXS:0000017
    alias: size_frac
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
  sodium:
    name: sodium
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Sodium concentration in the sample
    title: sodium
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    examples:
    - value: 10.5 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 363
    slot_uri: MIXS:0000428
    alias: sodium
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  specific_ecosystem:
    name: specific_ecosystem
    description: Specific ecosystems represent specific features of the environment
      like aphotic zone in an ocean or gastric mucosa within a host digestive system.
      Specific ecosystem is in position 5/5 in a GOLD path.
    comments:
    - Specific ecosystems help to define samples based on very specific characteristics
      of an environment under the five-level classification system.
    from_schema: https://example.com/nmdc_submission_schema
    see_also:
    - https://gold.jgi.doe.gov/help
    rank: 13
    is_a: gold_path_field
    alias: specific_ecosystem
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: sample_id_section
    range: SpecificEcosystemEnum
    recommended: true
  sr_dep_env:
    name: sr_dep_env
    description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock).
      If "other" is specified, please propose entry in "additional info" field
    title: source rock depositional environment
    examples:
    - value: Marine
    from_schema: https://example.com/nmdc_submission_schema
    rank: 366
    keywords:
    - environment
    - source
    slot_uri: MIXS:0000996
    alias: sr_dep_env
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: SrDepEnvEnum
  sr_geol_age:
    name: sr_geol_age
    description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
      If "other" is specified, please propose entry in "additional info" field'
    title: source rock geological age
    examples:
    - value: Silurian
    from_schema: https://example.com/nmdc_submission_schema
    rank: 367
    keywords:
    - age
    - source
    slot_uri: MIXS:0000997
    alias: sr_geol_age
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: GeolAgeEnum
  sr_kerog_type:
    name: sr_kerog_type
    description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic
      and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/
      fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris
      (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen).
      If "other" is specified, please propose entry in "additional info" field'
    title: source rock kerogen type
    examples:
    - value: Type IV
    from_schema: https://example.com/nmdc_submission_schema
    rank: 368
    keywords:
    - source
    - type
    slot_uri: MIXS:0000994
    alias: sr_kerog_type
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: SrKerogTypeEnum
  sr_lithology:
    name: sr_lithology
    description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock).
      If "other" is specified, please propose entry in "additional info" field
    title: source rock lithology
    examples:
    - value: Coal
    from_schema: https://example.com/nmdc_submission_schema
    rank: 369
    keywords:
    - lithology
    - source
    slot_uri: MIXS:0000995
    alias: sr_lithology
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    slot_group: mixs_core_section
    range: SrLithologyEnum
  sulfate:
    name: sulfate
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|umol/L'
    description: Concentration of sulfate in the sample
    title: sulfate
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, umol/L.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 5 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 44
    keywords:
    - sulfate
    slot_uri: MIXS:0000423
    alias: sulfate
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sulfate_fw:
    name: sulfate_fw
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L
    description: Original sulfate concentration in the hydrocarbon resource
    title: sulfate in formation water
    comments:
    - Value must be reported in mg/L. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 370
    keywords:
    - sulfate
    - water
    slot_uri: MIXS:0000407
    alias: sulfate_fw
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: mg/L
  sulfide:
    name: sulfide
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|umol/L'
    description: Concentration of sulfide in the sample
    title: sulfide
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, umol/L.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 2 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 371
    keywords:
    - sulfide
    slot_uri: MIXS:0000424
    alias: sulfide
    owner: HcrCoresInterface
    domain_of:
    - BiofilmInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - MiscEnvsInterface
    - SedimentInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  suspend_solids:
    name: suspend_solids
    annotations:
      Expected_value:
        tag: Expected_value
        value: suspended solid name;measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: gram, microgram, milligram per liter, mole per liter, gram per liter,
          part per million
    description: Concentration of substances including a wide variety of material,
      such as silt, decaying plant and animal matter; can include multiple substances
    title: suspended solids
    from_schema: https://example.com/nmdc_submission_schema
    rank: 372
    keywords:
    - solids
    - suspended
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000150
    alias: suspend_solids
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - WastewaterSludgeInterface
    slot_group: mixs_core_section
    range: string
    multivalued: false
  tan:
    name: tan
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L
    description: 'Total Acid Number  (TAN) is a measurement of acidity that is determined
      by the amount of  potassium hydroxide  in milligrams that is needed to neutralize
      the acids in one gram of oil.  It is an important quality measurement of  crude
      oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)'
    title: total acid number
    comments:
    - Value must be reported in mg/L. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 373
    keywords:
    - number
    - total
    slot_uri: MIXS:0000120
    alias: tan
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: mg/L
  temp:
    name: temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: degree Celsius
      storage_units:
        tag: storage_units
        value: Cel
    description: Temperature of the sample at the time of sampling
    title: temperature
    comments:
    - Value must be reported in degrees Celsius. Provide the numeric portion only.
    examples:
    - value: '25'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 37
    keywords:
    - temperature
    slot_uri: MIXS:0000113
    alias: temp
    owner: HcrCoresInterface
    domain_of:
    - AirInterface
    - BiofilmInterface
    - BuiltEnvInterface
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - HostAssociatedInterface
    - MiscEnvsInterface
    - PlantAssociatedInterface
    - SedimentInterface
    - SoilInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      descriptive_name: degrees Celsius
      ucum_code: Cel
  toluene:
    name: toluene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Concentration of toluene in the sample
    title: toluene
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 375
    slot_uri: MIXS:0000154
    alias: toluene
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_iron:
    name: tot_iron
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, milligram per kilogram
      storage_units:
        tag: storage_units
        value: mg/L|mg/kg
    description: Concentration of total iron in the sample
    title: total iron
    comments:
    - 'Value must be reported in one of the following units: mg/L, mg/kg. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 376
    keywords:
    - total
    slot_uri: MIXS:0000105
    alias: tot_iron
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_nitro:
    name: tot_nitro
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: microgram per liter, micromole per liter, milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L|ug/L|umol/L|%
    description: 'Total nitrogen concentration of water samples, calculated by: total
      nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
      without filtering, reported as nitrogen'
    title: total nitrogen concentration
    comments:
    - 'Value must be reported in one of the following units: mg/L, ug/L, umol/L, %.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 50 umol/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 377
    keywords:
    - concentration
    - nitrogen
    - total
    slot_uri: MIXS:0000102
    alias: tot_nitro
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - WastewaterSludgeInterface
    - WaterInterface
    slot_group: mixs_core_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_phosp:
    name: tot_phosp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: micromole per liter, milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L|umol/L'
    description: 'Total phosphorus concentration in the sample, calculated by: total
      phosphorus = total dissolved phosphorus + particulate phosphorus'
    title: total phosphorus
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L, umol/L.
      Provide the numeric portion followed by a space and the unit.'
    examples:
    - value: 0.03 mg/L
    from_schema: https://example.com/nmdc_submission_schema
    rank: 52
    keywords:
    - phosphorus
    - total
    slot_uri: MIXS:0000117
    alias: tot_phosp
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    - SoilInterface
    - WaterInterface
    slot_group: mixs_section
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_sulfur:
    name: tot_sulfur
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Concentration of total sulfur in the sample
    title: total sulfur
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 379
    keywords:
    - sulfur
    - total
    slot_uri: MIXS:0000419
    alias: tot_sulfur
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tvdss_of_hcr_press:
    name: tvdss_of_hcr_press
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: meter
      storage_units:
        tag: storage_units
        value: m
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original pressure was measured (e.g. 1578 m)
    title: depth (TVDSS) of hydrocarbon resource pressure
    comments:
    - Value must be reported in m. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 380
    keywords:
    - depth
    - hydrocarbon
    - pressure
    - resource
    slot_uri: MIXS:0000397
    alias: tvdss_of_hcr_press
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: m
  tvdss_of_hcr_temp:
    name: tvdss_of_hcr_temp
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: meter
      storage_units:
        tag: storage_units
        value: m
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original temperature was measured (e.g. 1345 m)
    title: depth (TVDSS) of hydrocarbon resource temperature
    comments:
    - Value must be reported in m. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 381
    keywords:
    - depth
    - hydrocarbon
    - resource
    - temperature
    slot_uri: MIXS:0000394
    alias: tvdss_of_hcr_temp
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: m
  vfa:
    name: vfa
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Concentration of Volatile Fatty Acids in the sample
    title: volatile fatty acids
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 382
    slot_uri: MIXS:0000152
    alias: vfa
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  vfa_fw:
    name: vfa_fw
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter
      storage_units:
        tag: storage_units
        value: mg/L
    description: Original volatile fatty acid concentration in the hydrocarbon resource
    title: vfa in formation water
    comments:
    - Value must be reported in mg/L. Provide the numeric portion only.
    from_schema: https://example.com/nmdc_submission_schema
    rank: 383
    keywords:
    - water
    slot_uri: MIXS:0000408
    alias: vfa_fw
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
    unit:
      ucum_code: mg/L
  viscosity:
    name: viscosity
    annotations:
      Expected_value:
        tag: Expected_value
        value: measurement value;measurement value
      Preferred_unit:
        tag: Preferred_unit
        value: cP at degree Celsius
    description: A measure of oil's resistance  to gradual deformation by  shear stress  or  tensile
      stress (e.g. 3.5 cp; 100   C)
    title: viscosity
    from_schema: https://example.com/nmdc_submission_schema
    rank: 384
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000126
    alias: viscosity
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
  win:
    name: win
    description: 'A unique identifier of a well or wellbore. This is part of the Global
      Framework for Well Identification initiative which is compiled by the Professional
      Petroleum Data Management Association (PPDM) in an effort to improve well identification
      systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)'
    title: well identification number
    from_schema: https://example.com/nmdc_submission_schema
    rank: 388
    keywords:
    - identifier
    - number
    slot_uri: MIXS:0000297
    alias: win
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
  xylene:
    name: xylene
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: milligram per liter, parts per million
      storage_units:
        tag: storage_units
        value: '[ppm]|mg/L'
    description: Concentration of xylene in the sample
    title: xylene
    comments:
    - 'Value must be reported in one of the following units: [ppm], mg/L. Provide
      the numeric portion followed by a space and the unit.'
    from_schema: https://example.com/nmdc_submission_schema
    rank: 389
    slot_uri: MIXS:0000156
    alias: xylene
    owner: HcrCoresInterface
    domain_of:
    - HcrCoresInterface
    - HcrFluidsSwabsInterface
    slot_group: mixs_core_section
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *.*$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  analysis_type:
    name: analysis_type
    description: Select all the data types associated or available for this biosample
    title: analysis/data type
    comments:
    - MIxS:investigation_type was included as a `see_also` but that term doesn't resolve
      any more
    examples:
    - value: metagenomics; metabolomics; metaproteomics
    from_schema: https://example.com/nmdc_submission_schema
    rank: 3
    alias: analysis_type
    owner: HcrCoresInterface
    domain_of:
    - DhMultiviewCommonColumnsMixin
    slot_group: sample_id_section
    range: AnalysisTypeEnum
    required: true
    multivalued: true
  samp_name:
    name: samp_name
    annotations:
      Preferred_unit:
        tag: Preferred_unit
        value: ''
    description: A local identifier or name that for the material sample collected.
      Refers to the original material collected or to any derived sub-samples.
    title: sample name
    comments:
    - It can have any format, but we suggest that you make it concise, unique and
      consistent within your lab, and as informative as possible.
    examples:
    - value: Rock core CB1178(5-6) from NSW
    from_schema: https://example.com/nmdc_submission_schema
    rank: 1
    keywords:
    - sample
    slot_uri: MIXS:0001107
    identifier: true
    alias: samp_name
    owner: HcrCoresInterface
    domain_of:
    - DhMultiviewCommonColumnsMixin
    slot_group: sample_id_section
    range: string
    required: true
  source_mat_id:
    name: source_mat_id
    annotations:
      Expected_value:
        tag: Expected_value
        value: 'for cultures of microorganisms: identifiers for two culture collections;
          for other material a unique arbitrary identifer'
    description: A globally unique identifier assigned to the parent sample or sample
      that is the source  of this sample.
    title: source material identifier
    todos:
    - Currently, the comments say to use UUIDs. However, if we implement assigning
      NMDC identifiers with the minter we dont need to require a GUID. It can be an
      optional field to fill out only if they already have a resolvable ID.
    comments:
    - Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn),
      NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These
      IDs enable linking to derived analytes and subsamples. If you have not assigned
      FAIR identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).
    - 'Identifiers must be prefixed. Possible FAIR prefixes are: `igsn` for International  Generic
      Sample Numbers (http://www.geosamples.org/getigsn), `biosample` for NCBI  biosample
      accession IDs, `gold` for GOLD identifiers.'
    examples:
    - value: igsn:AU1243
    - value: biosample:SAMEA2397676
    from_schema: https://example.com/nmdc_submission_schema
    rank: 2
    keywords:
    - identifier
    - material
    - source
    slot_uri: MIXS:0000026
    alias: source_mat_id
    owner: HcrCoresInterface
    domain_of:
    - DhMultiviewCommonColumnsMixin
    slot_group: sample_id_section
    range: string
    multivalued: false
    pattern: ^igsn:[a-zA-Z0-9]+|biosample:SAMN[a-zA-Z0-9]+|biosample:SAME[a-zA-Z0-9]+|biosample:SAMJ[a-zA-Z0-9]+|gold:Gb[0-9]+$