Enum: MicrobialBiosafetyMaterialCategoryEnum

The subset of JgiIsolateMaterialKindEnum categories that JGI treats as microbial and caps at an estimated genome size of 5000 Mb. Eukaryotic categories (Alga, Animal, Plant, Protist) are excluded; they remain bounded only by the estimated_size outer maximum of 100000 Mb.

URI: nmdc_sub_schema:MicrobialBiosafetyMaterialCategoryEnum

Permissible Values

Value	Meaning	Description
Archaea	NCBITaxon:2157	Domain Archaea
Bacteria	NCBITaxon:2	Domain Bacteria
Fungi	NCBITaxon:4751	Kingdom Fungi
Plasmid	None	DNA isolated primarily from a plasmid rather than a cellular organism
Virus	NCBITaxon:10239	Viruses (all Baltimore groups)
Synthetic Construct	NCBITaxon:32630	Artificially constructed sequence not derived from a natural organism

Identifier and Mapping Information

Schema Source

• from schema: https://example.com/nmdc_submission_schema

LinkML Source

name: MicrobialBiosafetyMaterialCategoryEnum
description: The subset of JgiIsolateMaterialKindEnum categories that JGI treats as
  microbial and caps at an estimated genome size of 5000 Mb. Eukaryotic categories
  (Alga, Animal, Plant, Protist) are excluded; they remain bounded only by the estimated_size
  outer maximum of 100000 Mb.
from_schema: https://example.com/nmdc_submission_schema
rank: 1000
permissible_values:
  Archaea:
    text: Archaea
    description: Domain Archaea.
    meaning: NCBITaxon:2157
  Bacteria:
    text: Bacteria
    description: Domain Bacteria.
    meaning: NCBITaxon:2
  Fungi:
    text: Fungi
    description: Kingdom Fungi.
    meaning: NCBITaxon:4751
  Plasmid:
    text: Plasmid
    description: DNA isolated primarily from a plasmid rather than a cellular organism.
      Not a taxonomic group; no NCBITaxon meaning applicable.
  Virus:
    text: Virus
    description: Viruses (all Baltimore groups).
    meaning: NCBITaxon:10239
  Synthetic Construct:
    text: Synthetic Construct
    description: Artificially constructed sequence not derived from a natural organism.
    meaning: NCBITaxon:32630