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Class: Protocol

URI: nmdc:Protocol

classDiagram class Protocol click Protocol href "../Protocol" Protocol : name Protocol : type Protocol : url

Slots

Name Cardinality and Range Description Inheritance
url 0..1
String
direct
name 0..1
String
A human readable label for an entity direct
type 1
Uriorcurie
the class_uri of the class that has been instantiated direct

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc:Protocol
native nmdc_sub_schema:Protocol

LinkML Source

Direct

name: Protocol
from_schema: https://example.com/nmdc_submission_schema
slots:
- url
- name
- type
class_uri: nmdc:Protocol

Induced

name: Protocol
from_schema: https://example.com/nmdc_submission_schema
attributes:
  url:
    name: url
    notes:
    - See issue 207 - this clashes with the mixs field
    from_schema: https://example.com/nmdc_submission_schema
    rank: 1000
    alias: url
    owner: Protocol
    domain_of:
    - ImageValue
    - Protocol
    - DataObject
    range: string
    multivalued: false
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://example.com/nmdc_submission_schema
    rank: 1000
    alias: name
    owner: Protocol
    domain_of:
    - PersonValue
    - NamedThing
    - Protocol
    range: string
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    notes:
    - replaces legacy nmdc:type slot
    - makes it easier to read example data files
    - required for polymorphic MongoDB collections
    examples:
    - value: nmdc:Biosample
    - value: nmdc:Study
    from_schema: https://example.com/nmdc_submission_schema
    see_also:
    - https://github.com/microbiomedata/nmdc-schema/issues/1048
    - https://github.com/microbiomedata/nmdc-schema/issues/1233
    - https://github.com/microbiomedata/nmdc-schema/issues/248
    structured_aliases:
      workflow_execution_class:
        literal_form: workflow_execution_class
        predicate: NARROW_SYNONYM
        contexts:
        - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: Protocol
    domain_of:
    - EukEval
    - FunctionalAnnotationAggMember
    - MobilePhaseSegment
    - PortionOfSubstance
    - MagBin
    - MetaboliteIdentification
    - GenomeFeature
    - FunctionalAnnotation
    - AttributeValue
    - NamedThing
    - OntologyRelation
    - FailureCategorization
    - Protocol
    - CreditAssociation
    - Doi
    range: uriorcurie
    required: true
class_uri: nmdc:Protocol