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Slot: chemical administration (chem_administration)

List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi

URI: MIXS:0000751 Alias: chem_administration

Inheritance

Applicable Classes

Name Description Modifies Slot
WastewaterSludgeInterface wastewater_sludge dh_interface no
HcrCoresInterface hcr_cores dh_interface no
HcrFluidsSwabsInterface hcr_fluids_swabs dh_interface no
AirInterface air dh_interface no
WaterInterface water dh_interface no
SedimentInterface sediment dh_interface no
HostAssociatedInterface host_associated dh_interface no
BiofilmInterface biofilm dh_interface no
MiscEnvsInterface misc_envs dh_interface no
SoilInterface soil dh_interface no
PlantAssociatedInterface plant_associated dh_interface no

Properties

  • Range: String

  • Recommended: True

  • Regex pattern: ^(\S+.*\S+ \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?\|)*(\S+.*\S+ \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?)$

Aliases

  • chemical administration

Examples

Value
agar [CHEBI:2509];2018-05-11
agar [CHEBI:2509];2018-05

Identifier and Mapping Information

Annotations

property value
expected_value CHEBI;timestamp
occurrence m

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000751
native nmdc_sub_schema:chem_administration

LinkML Source

name: chem_administration
annotations:
  expected_value:
    tag: expected_value
    value: CHEBI;timestamp
  occurrence:
    tag: occurrence
    value: m
description: List of chemical compounds administered to the host or site where sampling
  occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple
  compounds. For chemical entities of biological interest ontology (chebi) (v 163),
  http://purl.bioontology.org/ontology/chebi
title: chemical administration
examples:
- value: agar [CHEBI:2509];2018-05-11|agar [CHEBI:2509];2018-05-22
- value: agar [CHEBI:2509];2018-05
from_schema: https://example.com/nmdc_submission_schema
aliases:
- chemical administration
rank: 17
is_a: core field
string_serialization: '{termLabel} {[termID]};{timestamp}'
slot_uri: MIXS:0000751
alias: chem_administration
domain_of:
- AirInterface
- BiofilmInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
recommended: true
multivalued: false
pattern: ^(\S+.*\S+ \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?\|)*(\S+.*\S+
  \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?)$