Slot: chemical administration (chem_administration)
List of chemical compounds administered to the host or site where sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple compounds. For chemical entities of biological interest ontology (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
URI: MIXS:0000751 Alias: chem_administration
Inheritance
- core_field
- chem_administration
Applicable Classes
Name | Description | Modifies Slot |
---|---|---|
WaterInterface | water dh_interface | no |
HostAssociatedInterface | host_associated dh_interface | no |
BiofilmInterface | biofilm dh_interface | no |
AirInterface | air dh_interface | no |
SedimentInterface | sediment dh_interface | no |
WastewaterSludgeInterface | wastewater_sludge dh_interface | no |
HcrFluidsSwabsInterface | hcr_fluids_swabs dh_interface | no |
HcrCoresInterface | hcr_cores dh_interface | no |
SoilInterface | soil dh_interface | no |
MiscEnvsInterface | misc_envs dh_interface | no |
PlantAssociatedInterface | plant_associated dh_interface | no |
Properties
-
Range: String
-
Recommended: True
-
Regex pattern:
^(\S+.*\S+ \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?\|)*(\S+.*\S+ \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?)$
Aliases
- chemical administration
Examples
Value |
---|
agar [CHEBI:2509];2018-05-11 |
agar [CHEBI:2509];2018-05 |
Identifier and Mapping Information
Annotations
property | value |
---|---|
expected_value | CHEBI;timestamp |
occurrence | m |
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Mappings
Mapping Type | Mapped Value |
---|---|
self | MIXS:0000751 |
native | nmdc_sub_schema:chem_administration |
LinkML Source
name: chem_administration
annotations:
expected_value:
tag: expected_value
value: CHEBI;timestamp
occurrence:
tag: occurrence
value: m
description: List of chemical compounds administered to the host or site where sampling
occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can include multiple
compounds. For chemical entities of biological interest ontology (chebi) (v 163),
http://purl.bioontology.org/ontology/chebi
title: chemical administration
examples:
- value: agar [CHEBI:2509];2018-05-11|agar [CHEBI:2509];2018-05-22
- value: agar [CHEBI:2509];2018-05
from_schema: https://example.com/nmdc_submission_schema
aliases:
- chemical administration
rank: 17
is_a: core field
string_serialization: '{termLabel} {[termID]};{timestamp}'
slot_uri: MIXS:0000751
alias: chem_administration
domain_of:
- AirInterface
- BiofilmInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_modified_section
range: string
recommended: true
multivalued: false
pattern: ^(\S+.*\S+ \[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?\|)*(\S+.*\S+
\[[A-za-z]+:\d+\];[12]\d{3}(?:(?:-(?:0[1-9]|1[0-2]))(?:-(?:0[1-9]|[12]\d|3[01]))?)?)$