Slot: classified_as
Taxonomic classification of this organism.
URI: nmdc_sub_schema:classified_as Alias: classified_as
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| IsolateInterface | Metadata for isolate samples submitted to NMDC | no |
Properties
-
Range: String
-
Required: True
-
Regex pattern:
NCBITaxon:\d+
Examples
| Value |
|---|
| NCBITaxon:562 |
| NCBITaxon:1392 |
Comments
- Taxonomy-oriented uses (e.g. on Organism) should point to NcbiTaxon instances. OrganismSample reaches taxonomy indirectly via expected_organism.classified_as.
See Also
- https://github.com/microbiomedata/nmdc-schema/issues/2959
- https://github.com/microbiomedata/nmdc-schema/issues/3016
Identifier and Mapping Information
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc_sub_schema:classified_as |
| native | nmdc_sub_schema:classified_as |
| narrow | biolink:in_taxon |
LinkML Source
name: classified_as
description: Taxonomic classification of this organism.
notes:
- Narrowing `classified_as` to `NcbiTaxon` on organism-oriented classes via slot_usage
is tracked in https://github.com/microbiomedata/nmdc-schema/issues/3016.
comments:
- Taxonomy-oriented uses (e.g. on Organism) should point to NcbiTaxon instances. OrganismSample
reaches taxonomy indirectly via expected_organism.classified_as.
examples:
- value: NCBITaxon:562
- value: NCBITaxon:1392
from_schema: https://example.com/nmdc_submission_schema
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/2959
- https://github.com/microbiomedata/nmdc-schema/issues/3016
narrow_mappings:
- biolink:in_taxon
rank: 111
alias: classified_as
domain_of:
- IsolateInterface
slot_group: organism_section
range: string
required: true
multivalued: false
pattern: NCBITaxon:\d+
structured_pattern:
syntax: NCBITaxon:\d+
interpolated: false