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Slot: plate position (cont_well)

URI: nmdc_sub_schema:cont_well Alias: cont_well

Applicable Classes

Name Description Modifies Slot
JgiMgLrInterface Metadata for samples sent to JGI for long read metagenome sequencing yes
JgiMgInterface Metadata for samples sent to JGI for standard metagenome sequencing yes
JgiMtInterface jgi_mt dh_interface yes

Properties

  • Range: String

  • Recommended: True

  • Regex pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$

Aliases

  • dna_cont_well
  • rna_cont_well

Examples

Value
B2

Comments

  • Required when 'plate' is selected for container type.
  • Leave blank if the sample will be shipped in a tube.
  • JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.
  • Fill plate in column-wise format. B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc_sub_schema:cont_well
native nmdc_sub_schema:cont_well

LinkML Source

name: cont_well
title: plate position
comments:
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass
  validation.
- Fill plate in column-wise format. B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
examples:
- value: B2
from_schema: https://example.com/nmdc_submission_schema
aliases:
- dna_cont_well
- rna_cont_well
rank: 11
string_serialization: '{96 well plate pos}'
alias: cont_well
domain_of:
- JgiMgInterface
- JgiMgLrInterface
- JgiMtInterface
range: string
recommended: true
pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$