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Slot: plate position (cont_well)

URI: nmdc_sub_schema:cont_well Alias: cont_well

Applicable Classes

Name Description Modifies Slot
JgiMgInterface Metadata for samples sent to JGI for standard metagenome sequencing yes
JgiMtInterface jgi_mt dh_interface yes
JgiMgLrInterface Metadata for samples sent to JGI for long read metagenome sequencing yes

Properties

  • Range: String

  • Recommended: True

  • Regex pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$

Aliases

  • dna_cont_well
  • rna_cont_well

Examples

Value
B2

Comments

  • Required when 'plate' is selected for container type.
  • Leave blank if the sample will be shipped in a tube.
  • JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.
  • Fill plate in column-wise format. B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc_sub_schema:cont_well
native nmdc_sub_schema:cont_well

LinkML Source

name: cont_well
title: plate position
comments:
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass
  validation.
- Fill plate in column-wise format. B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
examples:
- value: B2
from_schema: https://example.com/nmdc_submission_schema
aliases:
- dna_cont_well
- rna_cont_well
rank: 11
alias: cont_well
domain_of:
- JgiMgInterface
- JgiMgLrInterface
- JgiMtInterface
range: string
recommended: true
pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$