Skip to content

Slot: DNA plate position (dna_cont_well)

URI: nmdc_sub_schema:dna_cont_well

Applicable Classes

Name Description Modifies Slot
JgiMgInterface Metadata for samples sent to JGI for standard metagenome sequencing yes
JgiMgLrInterface Metadata for samples sent to JGI for long read metagenome sequecning yes

Properties

  • Range: String

  • Recommended: True

  • Regex pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$

Examples

Value
B2

Comments

  • Required when 'plate' is selected for container type.
  • Leave blank if the sample will be shipped in a tube.
  • JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.
  • For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).

Identifier and Mapping Information

Schema Source

  • from schema: https://example.com/nmdc_submission_schema

LinkML Source

name: dna_cont_well
title: DNA plate position
comments:
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass
  validation.
- For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
examples:
- value: B2
from_schema: https://example.com/nmdc_submission_schema
rank: 11
string_serialization: '{96 well plate pos}'
alias: dna_cont_well
domain_of:
- JgiMgInterface
- JgiMgLrInterface
slot_group: JGI-Metagenomics
range: string
recommended: true
pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$