Slot: DNA plate position (dna_cont_well)

Applicable Classes

Name	Description	Modifies Slot
JgiMgLrInterface	Metadata for samples sent to JGI for long read metagenome sequecning	yes
JgiMgInterface	Metadata for samples sent to JGI for standard metagenome sequencing	yes

Properties

Range: String
Recommended: True
Regex pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$

Examples

Value
B2

Comments

Required when 'plate' is selected for container type.
Leave blank if the sample will be shipped in a tube.
JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.
For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).

Identifier and Mapping Information

Schema Source

from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	nmdc_sub_schema:dna_cont_well
native	nmdc_sub_schema:dna_cont_well

LinkML Source

name: dna_cont_well
title: DNA plate position
comments:
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass
  validation.
- For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
examples:
- value: B2
from_schema: https://example.com/nmdc_submission_schema
rank: 11
string_serialization: '{96 well plate pos}'
alias: dna_cont_well
domain_of:
- Biosample
- JgiMgInterface
- JgiMgLrInterface
slot_group: JGI-Metagenomics
range: string
recommended: true
pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$