Slot: DNA plate position (dna_cont_well)
URI: nmdc_sub_schema:dna_cont_well
Applicable Classes
Name | Description | Modifies Slot |
---|---|---|
JgiMgInterface | Metadata for samples sent to JGI for standard metagenome sequencing | yes |
JgiMgLrInterface | Metadata for samples sent to JGI for long read metagenome sequecning | yes |
Properties
-
Range: String
-
Recommended: True
-
Regex pattern:
^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$
Examples
Value |
---|
B2 |
Comments
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.
- For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
Identifier and Mapping Information
Schema Source
- from schema: https://example.com/nmdc_submission_schema
LinkML Source
name: dna_cont_well
title: DNA plate position
comments:
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass
validation.
- For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
examples:
- value: B2
from_schema: https://example.com/nmdc_submission_schema
rank: 11
string_serialization: '{96 well plate pos}'
alias: dna_cont_well
domain_of:
- JgiMgInterface
- JgiMgLrInterface
slot_group: JGI-Metagenomics
range: string
recommended: true
pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$