Slot: environmental medium (env_medium)

Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top).

URI: MIXS:0000014 Alias: env_medium

Inheritance

• mixs_env_triad_field
  • env_medium

Applicable Classes

Name	Description	Modifies Slot
WastewaterSludgeInterface	wastewater_sludge dh_interface	yes
HcrCoresInterface	hcr_cores dh_interface	yes
BuiltEnvInterface	built_env dh_interface	yes
HcrFluidsSwabsInterface	hcr_fluids_swabs dh_interface	yes
AirInterface	air dh_interface	yes
WaterInterface	water dh_interface	yes
SedimentInterface	sediment dh_interface	yes
HostAssociatedInterface	host_associated dh_interface	yes
BiofilmInterface	biofilm dh_interface	yes
MiscEnvsInterface	misc_envs dh_interface	yes
SoilInterface	soil dh_interface	yes
PlantAssociatedInterface	plant_associated dh_interface	yes

Properties

• Range: String

• Required: True

Aliases

• environmental medium

Examples

Value
soil [ENVO:00001998]

Identifier and Mapping Information

Annotations

property	value
expected_value	The material displaced by the entity at time of sampling. Recommend subclasses of environmental material [ENVO:00010483].
tooltip	The predominant environmental material or substrate that directly surrounds or hosts the sample or specimen at the time of sampling. Choose values from subclasses of the 'environmental material' class [ENVO:00010483] in the Environment Ontology (ENVO). Values for this field should be measurable or mass material nouns, representing continuous environmental materials. For host-associated or plant-associated samples, use terms from the UBERON or Plant Ontology to indicate a tissue, organ, or plant structure

Schema Source

• from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	MIXS:0000014
native	nmdc_sub_schema:env_medium

LinkML Source

name: env_medium
annotations:
  expected_value:
    tag: expected_value
    value: The material displaced by the entity at time of sampling. Recommend subclasses
      of environmental material [ENVO:00010483].
  tooltip:
    tag: tooltip
    value: The predominant environmental material or substrate that directly surrounds
      or hosts the sample or specimen at the time of sampling. Choose values from
      subclasses of the 'environmental material' class [ENVO:00010483] in the Environment
      Ontology (ENVO). Values for this field should be measurable or mass material
      nouns, representing continuous environmental materials. For host-associated
      or plant-associated samples, use terms from the UBERON or Plant Ontology to
      indicate a tissue, organ, or plant structure
description: 'Report the environmental material(s) immediately surrounding the sample
  or specimen at the time of sampling. We recommend using subclasses of ''environmental
  material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about
  how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
  . Terms from other OBO ontologies are permissible as long as they reference mass/volume
  nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree,
  a leaf, a table top).'
title: environmental medium
examples:
- value: soil [ENVO:00001998]
from_schema: https://example.com/nmdc_submission_schema
aliases:
- environmental medium
rank: 8
is_a: mixs_env_triad_field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
alias: env_medium
domain_of:
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: sample_id_section
range: string
required: true
multivalued: false