Slot: experimental factor (experimental_factor)
Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI)
URI: MIXS:0000008 Alias: experimental_factor
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| SedimentInterface | sediment dh_interface | no |
| SoilInterface | soil dh_interface | no |
| WastewaterSludgeInterface | wastewater_sludge dh_interface | no |
| MiscEnvsInterface | misc_envs dh_interface | no |
| BuiltEnvInterface | built_env dh_interface | no |
| HostAssociatedInterface | host_associated dh_interface | no |
| WaterInterface | water dh_interface | no |
| PlantAssociatedInterface | plant_associated dh_interface | no |
| BiofilmInterface | biofilm dh_interface | no |
| HcrFluidsSwabsInterface | hcr_fluids_swabs dh_interface | no |
| HcrCoresInterface | hcr_cores dh_interface | no |
| AirInterface | air dh_interface | no |
Properties
-
Range: String
-
Regex pattern:
^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
Examples
| Value |
|---|
| time series design [EFO:0001779] |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| Expected_value | text or EFO and/or OBI |
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0000008 |
| native | nmdc_sub_schema:experimental_factor |
LinkML Source
name: experimental_factor
annotations:
Expected_value:
tag: Expected_value
value: text or EFO and/or OBI
description: Variable aspects of an experiment design that can be used to describe
an experiment, or set of experiments, in an increasingly detailed manner. This field
accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for
Biomedical Investigations (OBI)
title: experimental factor
examples:
- value: time series design [EFO:0001779]
from_schema: https://example.com/nmdc_submission_schema
rank: 12
keywords:
- experimental
- factor
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000008
alias: experimental_factor
domain_of:
- AirInterface
- BiofilmInterface
- BuiltEnvInterface
- HcrCoresInterface
- HcrFluidsSwabsInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- SoilInterface
- WastewaterSludgeInterface
- WaterInterface
slot_group: mixs_section
range: string
multivalued: false
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$