Slot: host body site (host_body_site)

Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON

URI: MIXS:0000867 Alias: host_body_site

Inheritance

• core_field
  • host_body_site

Applicable Classes

Name	Description	Modifies Slot
HostAssociatedInterface	host_associated dh_interface	no

Properties

• Range: String

• Regex pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$

Aliases

• host body site

Examples

Value
gill [UBERON:0002535]

Identifier and Mapping Information

Annotations

property	value
expected_value	FMA or UBERON
occurrence	1

Schema Source

• from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	MIXS:0000867
native	nmdc_sub_schema:host_body_site

LinkML Source

name: host_body_site
annotations:
  expected_value:
    tag: expected_value
    value: FMA or UBERON
  occurrence:
    tag: occurrence
    value: '1'
description: Name of body site where the sample was obtained from, such as a specific
  organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology
  (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms,
  please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON
title: host body site
examples:
- value: gill [UBERON:0002535]
from_schema: https://example.com/nmdc_submission_schema
aliases:
- host body site
rank: 321
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000867
alias: host_body_site
domain_of:
- HostAssociatedInterface
slot_group: mixs_core_section
range: string
multivalued: false
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$