Skip to content

Slot: host body site (host_body_site)

Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). Use terms from the foundational model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON)

URI: MIXS:0000867 Alias: host_body_site

Applicable Classes

Name Description Modifies Slot
HostAssociatedInterface host_associated dh_interface no

Properties

  • Range: String

  • Regex pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$

Identifier and Mapping Information

Annotations

property value
Expected_value FMA or UBERON

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000867
native nmdc_sub_schema:host_body_site

LinkML Source

name: host_body_site
annotations:
  Expected_value:
    tag: Expected_value
    value: FMA or UBERON
description: Name of body site where the sample was obtained from, such as a specific
  organ or tissue (tongue, lung etc...). Use terms from the foundational model of
  anatomy ontology (fma) or the Uber-anatomy ontology (UBERON)
title: host body site
from_schema: https://example.com/nmdc_submission_schema
rank: 321
keywords:
- body
- host
- site
string_serialization: '{termLabel} [{termID}]'
slot_uri: MIXS:0000867
alias: host_body_site
domain_of:
- HostAssociatedInterface
slot_group: mixs_core_section
range: string
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$