Slot: host phenotype (host_phenotype)

Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP

URI: MIXS:0000874 Alias: host_phenotype

Inheritance

• core_field
  • host_phenotype

Applicable Classes

Name	Description	Modifies Slot
PlantAssociatedInterface	plant_associated dh_interface	no
HostAssociatedInterface	host_associated dh_interface	no

Properties

• Range: String

• Regex pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$

Aliases

• host phenotype

Examples

Value
elongated [PATO:0001154]

Identifier and Mapping Information

Annotations

property	value
expected_value	PATO or HP
occurrence	1

Schema Source

• from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	MIXS:0000874
native	nmdc_sub_schema:host_phenotype

LinkML Source

name: host_phenotype
annotations:
  expected_value:
    tag: expected_value
    value: PATO or HP
  occurrence:
    tag: occurrence
    value: '1'
description: Phenotype of human or other host. For phenotypic quality ontology (pato)
  (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For
  Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP
title: host phenotype
examples:
- value: elongated [PATO:0001154]
from_schema: https://example.com/nmdc_submission_schema
aliases:
- host phenotype
rank: 256
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000874
alias: host_phenotype
domain_of:
- HostAssociatedInterface
- PlantAssociatedInterface
slot_group: mixs_core_section
range: string
multivalued: false
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$