Slot: host subspecific genetic lineage (host_subspecf_genlin)

Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123.

URI: MIXS:0001318

Inheritance

core_field
- host_subspecf_genlin

Applicable Classes

Name	Description	Modifies Slot
PlantAssociatedInterface	plant_associated dh_interface	yes
HostAssociatedInterface	host_associated dh_interface	yes

Properties

Range: String

Aliases

host subspecific genetic lineage

Examples

Value
serovar:Newport, variety:glabrum, cultivar: Red Delicious

Identifier and Mapping Information

Annotations

property	value
expected_value	Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar.

Schema Source

from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	MIXS:0001318
native	nmdc_sub_schema:host_subspecf_genlin

LinkML Source

name: host_subspecf_genlin
annotations:
  expected_value:
    tag: expected_value
    value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
      e.g. serovar, biotype, ecotype, variety, cultivar.
  occurrence:
    tag: occurrence
    value: m
description: Information about the genetic distinctness of the host organism below
  the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar,
  or any relevant genetic typing schemes like Group I plasmid. Subspecies should not
  be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name
  and the lineage rank separated by a colon, e.g., biovar:abc123.
title: host subspecific genetic lineage
examples:
- value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious'
from_schema: https://example.com/nmdc_submission_schema
aliases:
- host subspecific genetic lineage
rank: 1000
is_a: core field
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0001318
alias: host_subspecf_genlin
domain_of:
- Biosample
- HostAssociatedInterface
- PlantAssociatedInterface
range: string
multivalued: false