Slot: isolate_name

Isolate or mutant name.

URI: nmdc_sub_schema:isolate_name Alias: isolate_name

Applicable Classes

Name	Description	Modifies Slot
IsolateInterface	Metadata for microbial isolate samples submitted to NMDC	no

Properties

Range: String

Examples

Value
Bd21-3
MR164
Isolate

Comments

MIxS subspecf_gen_lin (MIXS:0000020) covers this concept along with strain, cultivar, serovar, biotype, ecotype, and other sub-species lineage types in a single slot using a rank-prefix encoding. NMDC uses a separate slot for the isolate rank specifically.

Identifier and Mapping Information

Schema Source

from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	nmdc_sub_schema:isolate_name
native	nmdc_sub_schema:isolate_name
related	MIXS:0000020

LinkML Source

name: isolate_name
description: Isolate or mutant name.
comments:
- MIxS `subspecf_gen_lin` (MIXS:0000020) covers this concept along with strain, cultivar,
  serovar, biotype, ecotype, and other sub-species lineage types in a single slot
  using a rank-prefix encoding. NMDC uses a separate slot for the isolate rank specifically.
examples:
- value: Bd21-3
  description: GOLD dw_sample_taxonomy_info.isolate (n=260 records, queried 2026-04-30)
    — Brachypodium distachyon Bd21-3 reference accession
- value: MR164
  description: GOLD dw_sample_taxonomy_info.isolate (n=555 records, queried 2026-04-30)
- value: Isolate
  description: GOLD dw_sample_taxonomy_info.isolate (n=918 records, queried 2026-04-30)
    — generic placeholder used when no specific mutant/isolate name is recorded
in_subset:
- jgi_isolate
from_schema: https://example.com/nmdc_submission_schema
structured_aliases:
  Isolate:
    literal_form: Isolate
    predicate: EXACT_SYNONYM
    notes:
    - Exact JGI form template is access-restricted; source is the public submission
      overview.
    source: https://jgi.doe.gov/user-programs/pmo-overview/project-materials-submission-overview/
related_mappings:
- MIXS:0000020
rank: 109
alias: isolate_name
domain_of:
- IsolateInterface
slot_group: organism_section
range: string