Slot: perturbation (perturbation)

Type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with perturbation regimen including how many times the perturbation was repeated, how long each perturbation lasted, and the start and end time of the entire perturbation period; can include multiple perturbation types

URI: MIXS:0000754

Inheritance

• core_field
  • perturbation

Applicable Classes

Name	Description	Modifies Slot
HostAssociatedInterface	host_associated dh_interface	yes
AirInterface	air dh_interface	yes
WaterInterface	water dh_interface	yes
BiofilmInterface	biofilm dh_interface	yes
WastewaterSludgeInterface	wastewater_sludge dh_interface	yes
PlantAssociatedInterface	plant_associated dh_interface	yes
MiscEnvsInterface	misc_envs dh_interface	yes
SedimentInterface	sediment dh_interface	yes

Properties

• Range: String

Aliases

• perturbation

Examples

Value
antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M

Identifier and Mapping Information

Annotations

property	value
expected_value	perturbation type name;perturbation interval and duration

Schema Source

• from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	MIXS:0000754
native	nmdc_sub_schema:perturbation

LinkML Source

name: perturbation
annotations:
  expected_value:
    tag: expected_value
    value: perturbation type name;perturbation interval and duration
  occurrence:
    tag: occurrence
    value: m
description: Type of perturbation, e.g. chemical administration, physical disturbance,
  etc., coupled with perturbation regimen including how many times the perturbation
  was repeated, how long each perturbation lasted, and the start and end time of the
  entire perturbation period; can include multiple perturbation types
title: perturbation
examples:
- value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M
from_schema: https://example.com/nmdc_submission_schema
aliases:
- perturbation
rank: 1000
is_a: core field
string_serialization: '{text};{Rn/start_time/end_time/duration}'
slot_uri: MIXS:0000754
alias: perturbation
domain_of:
- Biosample
- AirInterface
- BiofilmInterface
- HostAssociatedInterface
- MiscEnvsInterface
- PlantAssociatedInterface
- SedimentInterface
- WastewaterSludgeInterface
- WaterInterface
range: string
multivalued: false