Slot: sample name (samp_name)
A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name.
URI: MIXS:0001107
Inheritance
- investigation_field
- samp_name
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MetatranscriptomeSequencingNonInterleavedDataInterface | Interface for non-interleaved metatranscriptome sequencing data | no |
| MetatranscriptomeSequencingInterleavedDataInterface | Interface for interleaved metatranscriptome sequencing data | no |
| BuiltEnvInterface | built_env dh_interface | no |
| MiscEnvsInterface | misc_envs dh_interface | no |
| WaterInterface | water dh_interface | no |
| AirInterface | air dh_interface | no |
| SedimentInterface | sediment dh_interface | no |
| PlantAssociatedInterface | plant_associated dh_interface | no |
| WastewaterSludgeInterface | wastewater_sludge dh_interface | no |
| MetagenomeSequencingNonInterleavedDataInterface | Interface for non-interleaved metagenome sequencing data | no |
| HcrCoresInterface | hcr_cores dh_interface | no |
| HostAssociatedInterface | host_associated dh_interface | no |
| MetagenomeSequencingInterleavedDataInterface | Interface for interleaved metagenome sequencing data | no |
| JgiMgLrInterface | Metadata for samples sent to JGI for long read metagenome sequecning | no |
| BiofilmInterface | biofilm dh_interface | no |
| HcrFluidsSwabsInterface | hcr_fluids_swabs dh_interface | no |
| SoilInterface | soil dh_interface | no |
| EmslInterface | emsl dh_interface | no |
| JgiMtInterface | jgi_mt dh_interface | no |
| JgiMgInterface | Metadata for samples sent to JGI for standard metagenome sequencing | no |
| DhMultiviewCommonColumnsMixin | Mixin with DhMutliviewCommon Columns | yes |
Properties
- Range: String
Aliases
- sample name
Examples
| Value |
|---|
| ISDsoil1 |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| expected_value | text |
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0001107 |
| native | nmdc_sub_schema:samp_name |
LinkML Source
name: samp_name
annotations:
expected_value:
tag: expected_value
value: text
description: A local identifier or name that for the material sample used for extracting
nucleic acids, and subsequent sequencing. It can refer either to the original material
collected or to any derived sub-samples. It can have any format, but we suggest
that you make it concise, unique and consistent within your lab, and as informative
as possible. INSDC requires every sample name from a single Submitter to be unique.
Use of a globally unique identifier for the field source_mat_id is recommended in
addition to sample_name.
title: sample name
examples:
- value: ISDsoil1
from_schema: https://example.com/nmdc_submission_schema
aliases:
- sample name
rank: 1000
is_a: investigation field
string_serialization: '{text}'
slot_uri: MIXS:0001107
alias: samp_name
domain_of:
- Biosample
- DhMultiviewCommonColumnsMixin
range: string
multivalued: false