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Slot: sample name (samp_name)

A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name.

URI: MIXS:0001107

Inheritance

Applicable Classes

Name Description Modifies Slot
HostAssociatedInterface host_associated dh_interface no
AirInterface air dh_interface no
HcrCoresInterface hcr_cores dh_interface no
MiscEnvsInterface misc_envs dh_interface no
SoilInterface soil dh_interface no
EmslInterface emsl dh_interface no
WaterInterface water dh_interface no
BiofilmInterface biofilm dh_interface no
BuiltEnvInterface built_env dh_interface no
WastewaterSludgeInterface wastewater_sludge dh_interface no
DhMultiviewCommonColumnsMixin Mixin with DhMutliviewCommon Columns yes
JgiMtInterface jgi_mt dh_interface no
PlantAssociatedInterface plant_associated dh_interface no
JgiMgLrInterface Metadata for samples sent to JGI for long read metagenome sequecning no
JgiMgInterface Metadata for samples sent to JGI for standard metagenome sequencing no
SedimentInterface sediment dh_interface no
HcrFluidsSwabsInterface hcr_fluids_swabs dh_interface no

Properties

Aliases

  • sample name

Examples

Value
ISDsoil1

Identifier and Mapping Information

Annotations

property value
expected_value text

Schema Source

  • from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type Mapped Value
self MIXS:0001107
native nmdc_sub_schema:samp_name

LinkML Source

name: samp_name
annotations:
  expected_value:
    tag: expected_value
    value: text
description: A local identifier or name that for the material sample used for extracting
  nucleic acids, and subsequent sequencing. It can refer either to the original material
  collected or to any derived sub-samples. It can have any format, but we suggest
  that you make it concise, unique and consistent within your lab, and as informative
  as possible. INSDC requires every sample name from a single Submitter to be unique.
  Use of a globally unique identifier for the field source_mat_id is recommended in
  addition to sample_name.
title: sample name
examples:
- value: ISDsoil1
from_schema: https://example.com/nmdc_submission_schema
aliases:
- sample name
rank: 1000
is_a: investigation field
string_serialization: '{text}'
slot_uri: MIXS:0001107
alias: samp_name
domain_of:
- Biosample
- DhMultiviewCommonColumnsMixin
range: string
multivalued: false