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Slot: sample type (samp_type)

The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)

URI: MIXS:0000998 Alias: samp_type

Applicable Classes

Name Description Modifies Slot
HcrCoresInterface hcr_cores dh_interface no
HcrFluidsSwabsInterface hcr_fluids_swabs dh_interface no

Properties

  • Range: String

  • Regex pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$

Examples

Value
built environment sample [GENEPIO:0001248]

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000998
native nmdc_sub_schema:samp_type

LinkML Source

name: samp_type
description: The type of material from which the sample was obtained. For the Hydrocarbon
  package, samples include types like core, rock trimmings, drill cuttings, piping
  section, coupon, pigging debris, solid deposit, produced fluid, produced water,
  injected water, swabs, etc. For the Food Package, samples are usually categorized
  as food, body products or tissues, or environmental material. This field accepts
  terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)
title: sample type
examples:
- value: built environment sample [GENEPIO:0001248]
from_schema: https://example.com/nmdc_submission_schema
rank: 357
keywords:
- sample
- type
slot_uri: MIXS:0000998
alias: samp_type
domain_of:
- HcrCoresInterface
- HcrFluidsSwabsInterface
slot_group: mixs_core_section
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
structured_pattern:
  syntax: ^{termLabel} \[{termID}\]$
  interpolated: true
  partial_match: true