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Slot: source material identifier (source_mat_id)

A globally unique identifier assigned to the parent sample or sample that is the source of this sample.

URI: MIXS:0000026 Alias: source_mat_id

Inheritance

Applicable Classes

Name Description Modifies Slot
MetagenomeSequencingNonInterleavedDataInterface Interface for non-interleaved metagenome sequencing data no
HostAssociatedInterface host_associated dh_interface no
MetatranscriptomeSequencingInterleavedDataInterface Interface for interleaved metatranscriptome sequencing data no
EmslInterface emsl dh_interface no
AirInterface air dh_interface no
SoilInterface soil dh_interface no
BiofilmInterface biofilm dh_interface no
MetagenomeSequencingInterleavedDataInterface Interface for interleaved metagenome sequencing data no
DhMultiviewCommonColumnsMixin Mixin with DhMutliviewCommon Columns no
WaterInterface water dh_interface no
BuiltEnvInterface built_env dh_interface no
HcrFluidsSwabsInterface hcr_fluids_swabs dh_interface no
PlantAssociatedInterface plant_associated dh_interface no
MiscEnvsInterface misc_envs dh_interface no
MetatranscriptomeSequencingNonInterleavedDataInterface Interface for non-interleaved metatranscriptome sequencing data no
JgiMgInterface Metadata for samples sent to JGI for standard metagenome sequencing no
JgiMgLrInterface Metadata for samples sent to JGI for long read metagenome sequencing no
WastewaterSludgeInterface wastewater_sludge dh_interface no
HcrCoresInterface hcr_cores dh_interface no
SedimentInterface sediment dh_interface no
JgiMtInterface jgi_mt dh_interface no

Properties

  • Range: String

  • Regex pattern: ^igsn:[a-zA-Z0-9]+|biosample:SAMN[a-zA-Z0-9]+|biosample:SAME[a-zA-Z0-9]+|biosample:SAMJ[a-zA-Z0-9]+|gold:Gb[0-9]+$

Examples

Value
igsn:AU1243
biosample:SAMEA2397676

Comments

TODOs

  • Currently, the comments say to use UUIDs. However, if we implement assigning NMDC identifiers with the minter we dont need to require a GUID. It can be an optional field to fill out only if they already have a resolvable ID.

Identifier and Mapping Information

Annotations

property value
expected_value for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000026
native nmdc_sub_schema:source_mat_id

LinkML Source

name: source_mat_id
annotations:
  expected_value:
    tag: expected_value
    value: 'for cultures of microorganisms: identifiers for two culture collections;
      for other material a unique arbitrary identifer'
description: A globally unique identifier assigned to the parent sample or sample
  that is the source  of this sample.
title: source material identifier
todos:
- Currently, the comments say to use UUIDs. However, if we implement assigning NMDC
  identifiers with the minter we dont need to require a GUID. It can be an optional
  field to fill out only if they already have a resolvable ID.
comments:
- Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn),
  NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These IDs
  enable linking to derived analytes and subsamples. If you have not assigned FAIR
  identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).
- 'Identifiers must be prefixed. Possible FAIR prefixes are: `igsn` for International  Generic
  Sample Numbers (http://www.geosamples.org/getigsn), `biosample` for NCBI  biosample
  accession IDs, `gold` for GOLD identifiers.'
examples:
- value: igsn:AU1243
- value: biosample:SAMEA2397676
from_schema: https://example.com/nmdc_submission_schema
rank: 2
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000026
alias: source_mat_id
domain_of:
- DhMultiviewCommonColumnsMixin
slot_group: sample_id_section
range: string
multivalued: false
pattern: ^igsn:[a-zA-Z0-9]+|biosample:SAMN[a-zA-Z0-9]+|biosample:SAME[a-zA-Z0-9]+|biosample:SAMJ[a-zA-Z0-9]+|gold:Gb[0-9]+$