Slot: source material identifiers (source_mat_id)

A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2).

URI: MIXS:0000026

Inheritance

nucleic_acid_sequence_source_field
- source_mat_id

Applicable Classes

Name	Description	Modifies Slot
HostAssociatedInterface	host_associated dh_interface	no
AirInterface	air dh_interface	no
HcrCoresInterface	hcr_cores dh_interface	no
MiscEnvsInterface	misc_envs dh_interface	no
SoilInterface	soil dh_interface	no
EmslInterface	emsl dh_interface	no
WaterInterface	water dh_interface	no
BiofilmInterface	biofilm dh_interface	no
BuiltEnvInterface	built_env dh_interface	no
WastewaterSludgeInterface	wastewater_sludge dh_interface	no
DhMultiviewCommonColumnsMixin	Mixin with DhMutliviewCommon Columns	yes
JgiMtInterface	jgi_mt dh_interface	no
PlantAssociatedInterface	plant_associated dh_interface	no
JgiMgLrInterface	Metadata for samples sent to JGI for long read metagenome sequecning	no
JgiMgInterface	Metadata for samples sent to JGI for standard metagenome sequencing	no
SedimentInterface	sediment dh_interface	no
HcrFluidsSwabsInterface	hcr_fluids_swabs dh_interface	no

Properties

Range: String

Aliases

source material identifiers

Examples

Value
MPI012345

Identifier and Mapping Information

Annotations

property	value
expected_value	for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer

Schema Source

from schema: https://example.com/nmdc_submission_schema

Mappings

Mapping Type	Mapped Value
self	MIXS:0000026
native	nmdc_sub_schema:source_mat_id

LinkML Source

name: source_mat_id
annotations:
  expected_value:
    tag: expected_value
    value: 'for cultures of microorganisms: identifiers for two culture collections;
      for other material a unique arbitrary identifer'
description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID,
  and as opposed to a particular digital record of a material sample) used for extracting
  nucleic acids, and subsequent sequencing. The identifier can refer either to the
  original material collected or to any derived sub-samples. The INSDC qualifiers
  /specimen_voucher, /bio_material, or /culture_collection may or may not share the
  same value as the source_mat_id field. For instance, the /specimen_voucher qualifier
  and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen
  voucher and sampled tissue with the same identifier. However, the /culture_collection
  qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
  would refer to an identifier from some derived culture from which the nucleic acids
  were extracted (e.g. xatc123 or ark:/2154/R2).
title: source material identifiers
examples:
- value: MPI012345
from_schema: https://example.com/nmdc_submission_schema
aliases:
- source material identifiers
rank: 1000
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000026
alias: source_mat_id
domain_of:
- Biosample
- DhMultiviewCommonColumnsMixin
range: string
multivalued: false