Class: BiosampleSetChemAdministration
A controlled term or class from an ontology Flattened tabular form of 'ControlledTermValue'. Attributes are the union of base-class slots and slots from concrete subclasses of 'ControlledTermValue' that may appear via the 'type' field.
URI: https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetChemAdministration
classDiagram
class BiosampleSetChemAdministration
click BiosampleSetChemAdministration href "../BiosampleSetChemAdministration/"
BiosampleSetChemAdministration : has_raw_value
BiosampleSetChemAdministration : parent_id
BiosampleSetChemAdministration : term_alternative_identifiers
BiosampleSetChemAdministration : term_alternative_names
BiosampleSetChemAdministration : term_definition
BiosampleSetChemAdministration : term_description
BiosampleSetChemAdministration : term_id
BiosampleSetChemAdministration : term_is_obsolete
BiosampleSetChemAdministration : term_is_root
BiosampleSetChemAdministration : term_name
BiosampleSetChemAdministration : type
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| has_raw_value | 0..1 String |
The value that was specified for an annotation in raw form, i | direct |
| term_alternative_identifiers | * Uriorcurie |
A list of alternative identifiers for the entity | direct |
| term_alternative_names | * String |
A list of alternative names used to refer to the entity | direct |
| term_definition | 0..1 String |
The definition of the ontology term as provided by the ontology | direct |
| term_description | 0..1 String |
a human-readable description of a thing Flattened from nested slot 'term | direct |
| term_id | 0..1 Uriorcurie |
A unique identifier for a thing | direct |
| term_is_obsolete | 0..1 Boolean |
A boolean value indicating whether the ontology term is obsolete | direct |
| term_is_root | 0..1 Boolean |
A boolean value indicating whether the ontology term is a root term; it is no... | direct |
| term_name | 0..1 String |
A human readable label for an entity Flattened from nested slot 'term | direct |
| type | 1 Uriorcurie |
the class_uri of the class that has been instantiated | direct |
| parent_id | 0..1 String |
Identifier of the parent 'Biosample' record | direct |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| table_name | biosample_set_chem_administration |
| source_class | Biosample |
Schema Source
- from schema: https://w3id.org/nmdc/nmdc-schema-flattened
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetChemAdministration |
| native | https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetChemAdministration |
LinkML Source
Direct
name: biosample_set_chem_administration
annotations:
table_name:
tag: table_name
value: biosample_set_chem_administration
source_class:
tag: source_class
value: Biosample
description: A controlled term or class from an ontology Flattened tabular form of
'ControlledTermValue'. Attributes are the union of base-class slots and slots from
concrete subclasses of 'ControlledTermValue' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
has_raw_value:
name: has_raw_value
description: The value that was specified for an annotation in raw form, i.e.
a string. E.g. "2 cm" or "2-4 cm"
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
domain_of:
- biosample_set_agrochem_addition
- biosample_set_air_temp_regm
- biosample_set_antibiotic_regm
- biosample_set_atmospheric_data
- biosample_set_biomass
- biosample_set_chem_administration
- biosample_set_chem_mutagen
- biosample_set_climate_environment
- biosample_set_diether_lipids
- biosample_set_emulsions
- biosample_set_fertilizer_regm
- biosample_set_fungicide_regm
- biosample_set_gaseous_environment
- biosample_set_gaseous_substances
- biosample_set_gravity
- biosample_set_growth_hormone_regm
- biosample_set_heavy_metals
- biosample_set_herbicide_regm
- biosample_set_host_diet
- biosample_set_humidity_regm
- biosample_set_inorg_particles
- biosample_set_mineral_nutr_regm
- biosample_set_misc_param
- biosample_set_n_alkanes
- biosample_set_org_particles
- biosample_set_organism_count
- biosample_set_particle_class
- biosample_set_perturbation
- biosample_set_pesticide_regm
- biosample_set_ph_regm
- biosample_set_phaeopigments
- biosample_set_phosplipid_fatt_acid
- biosample_set_pollutants
- biosample_set_radiation_regm
- biosample_set_rainfall_regm
- biosample_set_salt_regm
- biosample_set_season_environment
- biosample_set_soluble_inorg_mat
- biosample_set_soluble_org_mat
- biosample_set_standing_water_regm
- biosample_set_suspend_solids
- biosample_set_volatile_org_comp
- biosample_set_water_temp_regm
- biosample_set_watering_regm
- study_set_study_image
range: string
multivalued: false
term_alternative_identifiers:
name: term_alternative_identifiers
description: A list of alternative identifiers for the entity. Flattened from
nested slot 'term.alternative_identifiers'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: uriorcurie
required: false
multivalued: true
term_alternative_names:
name: term_alternative_names
description: A list of alternative names used to refer to the entity. The distinction
between name and alternative names is application-specific. This should not
be used for identifers which have their own slots (e.g., bioproject:PRJNA406974)
Flattened from nested slot 'term.alternative_names'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: true
term_definition:
name: term_definition
description: The definition of the ontology term as provided by the ontology.
Flattened from nested slot 'term.definition'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: false
term_description:
name: term_description
description: a human-readable description of a thing Flattened from nested slot
'term.description'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: false
term_id:
name: term_id
description: A unique identifier for a thing. Must be either a CURIE shorthand
for a URI or a complete URI Flattened from nested slot 'term.id'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: uriorcurie
required: false
multivalued: false
term_is_obsolete:
name: term_is_obsolete
description: A boolean value indicating whether the ontology term is obsolete.
Flattened from nested slot 'term.is_obsolete'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: boolean
required: false
multivalued: false
term_is_root:
name: term_is_root
description: A boolean value indicating whether the ontology term is a root term;
it is not a subclass of any other term. Flattened from nested slot 'term.is_root'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: boolean
required: false
multivalued: false
term_name:
name: term_name
description: A human readable label for an entity Flattened from nested slot 'term.name'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: false
type:
name: type
description: the class_uri of the class that has been instantiated
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
domain_of:
- BiosampleFlat
- biosample_set_agrochem_addition
- biosample_set_air_temp_regm
- biosample_set_antibiotic_regm
- biosample_set_atmospheric_data
- biosample_set_biomass
- biosample_set_chem_administration
- biosample_set_chem_mutagen
- biosample_set_climate_environment
- biosample_set_diether_lipids
- biosample_set_emulsions
- biosample_set_fertilizer_regm
- biosample_set_fungicide_regm
- biosample_set_gaseous_environment
- biosample_set_gaseous_substances
- biosample_set_gravity
- biosample_set_growth_hormone_regm
- biosample_set_heavy_metals
- biosample_set_herbicide_regm
- biosample_set_host_diet
- biosample_set_humidity_regm
- biosample_set_inorg_particles
- biosample_set_mineral_nutr_regm
- biosample_set_misc_param
- biosample_set_n_alkanes
- biosample_set_org_particles
- biosample_set_organism_count
- biosample_set_particle_class
- biosample_set_perturbation
- biosample_set_pesticide_regm
- biosample_set_ph_regm
- biosample_set_phaeopigments
- biosample_set_phosplipid_fatt_acid
- biosample_set_pollutants
- biosample_set_radiation_regm
- biosample_set_rainfall_regm
- biosample_set_salt_regm
- biosample_set_season_environment
- biosample_set_soluble_inorg_mat
- biosample_set_soluble_org_mat
- biosample_set_standing_water_regm
- biosample_set_suspend_solids
- biosample_set_volatile_org_comp
- biosample_set_water_temp_regm
- biosample_set_watering_regm
- CalibrationInformationFlat
- CollectingBiosamplesFromSiteFlat
- collecting_biosamples_from_site_set_has_failure_categorization
- ConfigurationFlat
- configuration_set_ordered_mobile_phases
- DataGenerationFlat
- data_generation_set_has_failure_categorization
- DataObjectFlat
- FieldResearchSiteFlat
- FunctionalAnnotationAggMemberFlat
- FunctionalAnnotationFlat
- GenomeFeatureFlat
- InstrumentFlat
- ManifestFlat
- MaterialProcessingFlat
- material_processing_set_has_failure_categorization
- material_processing_set_ordered_mobile_phases
- material_processing_set_substances_used
- OrganismSampleFlat
- OrganismFlat
- organism_set_classified_as
- ProcessedSampleFlat
- StorageProcessFlat
- storage_process_set_has_failure_categorization
- storage_process_set_substances_used
- StudyFlat
- study_set_associated_dois
- study_set_has_credit_associations
- study_set_protocol_link
- study_set_study_image
- WorkflowExecutionFlat
- workflow_execution_set_has_failure_categorization
- workflow_execution_set_has_metabolite_identifications
- workflow_execution_set_mags_list
range: uriorcurie
required: true
multivalued: false
parent_id:
name: parent_id
description: Identifier of the parent 'Biosample' record.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
domain_of:
- biosample_set_agrochem_addition
- biosample_set_air_temp_regm
- biosample_set_antibiotic_regm
- biosample_set_associated_studies
- biosample_set_atmospheric_data
- biosample_set_biomass
- biosample_set_chem_administration
- biosample_set_chem_mutagen
- biosample_set_climate_environment
- biosample_set_diether_lipids
- biosample_set_emulsions
- biosample_set_fertilizer_regm
- biosample_set_fungicide_regm
- biosample_set_gaseous_environment
- biosample_set_gaseous_substances
- biosample_set_gravity
- biosample_set_growth_hormone_regm
- biosample_set_heavy_metals
- biosample_set_herbicide_regm
- biosample_set_host_diet
- biosample_set_humidity_regm
- biosample_set_inorg_particles
- biosample_set_mineral_nutr_regm
- biosample_set_misc_param
- biosample_set_n_alkanes
- biosample_set_org_particles
- biosample_set_organism_count
- biosample_set_particle_class
- biosample_set_perturbation
- biosample_set_pesticide_regm
- biosample_set_ph_regm
- biosample_set_phaeopigments
- biosample_set_phosplipid_fatt_acid
- biosample_set_pollutants
- biosample_set_radiation_regm
- biosample_set_rainfall_regm
- biosample_set_salt_regm
- biosample_set_season_environment
- biosample_set_soluble_inorg_mat
- biosample_set_soluble_org_mat
- biosample_set_standing_water_regm
- biosample_set_suspend_solids
- biosample_set_volatile_org_comp
- biosample_set_water_temp_regm
- biosample_set_watering_regm
- collecting_biosamples_from_site_set_has_failure_categorization
- collecting_biosamples_from_site_set_has_input
- collecting_biosamples_from_site_set_has_output
- configuration_set_ordered_mobile_phases
- data_generation_set_associated_studies
- data_generation_set_has_failure_categorization
- data_generation_set_has_input
- data_generation_set_has_output
- data_generation_set_instrument_used
- data_object_set_in_manifest
- field_research_site_set_part_of
- material_processing_set_has_failure_categorization
- material_processing_set_has_input
- material_processing_set_has_output
- material_processing_set_instrument_used
- material_processing_set_ordered_mobile_phases
- material_processing_set_substances_used
- organism_sample_set_associated_studies
- organism_set_classified_as
- storage_process_set_has_failure_categorization
- storage_process_set_has_input
- storage_process_set_has_output
- storage_process_set_substances_used
- study_set_associated_dois
- study_set_has_credit_associations
- study_set_part_of
- study_set_protocol_link
- study_set_study_image
- workflow_execution_set_has_failure_categorization
- workflow_execution_set_has_input
- workflow_execution_set_has_metabolite_identifications
- workflow_execution_set_has_output
- workflow_execution_set_mags_list
- workflow_execution_set_uses_calibration
- workflow_execution_set_was_informed_by
range: string
Induced
name: biosample_set_chem_administration
annotations:
table_name:
tag: table_name
value: biosample_set_chem_administration
source_class:
tag: source_class
value: Biosample
description: A controlled term or class from an ontology Flattened tabular form of
'ControlledTermValue'. Attributes are the union of base-class slots and slots from
concrete subclasses of 'ControlledTermValue' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
has_raw_value:
name: has_raw_value
description: The value that was specified for an annotation in raw form, i.e.
a string. E.g. "2 cm" or "2-4 cm"
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
owner: biosample_set_chem_administration
domain_of:
- biosample_set_agrochem_addition
- biosample_set_air_temp_regm
- biosample_set_antibiotic_regm
- biosample_set_atmospheric_data
- biosample_set_biomass
- biosample_set_chem_administration
- biosample_set_chem_mutagen
- biosample_set_climate_environment
- biosample_set_diether_lipids
- biosample_set_emulsions
- biosample_set_fertilizer_regm
- biosample_set_fungicide_regm
- biosample_set_gaseous_environment
- biosample_set_gaseous_substances
- biosample_set_gravity
- biosample_set_growth_hormone_regm
- biosample_set_heavy_metals
- biosample_set_herbicide_regm
- biosample_set_host_diet
- biosample_set_humidity_regm
- biosample_set_inorg_particles
- biosample_set_mineral_nutr_regm
- biosample_set_misc_param
- biosample_set_n_alkanes
- biosample_set_org_particles
- biosample_set_organism_count
- biosample_set_particle_class
- biosample_set_perturbation
- biosample_set_pesticide_regm
- biosample_set_ph_regm
- biosample_set_phaeopigments
- biosample_set_phosplipid_fatt_acid
- biosample_set_pollutants
- biosample_set_radiation_regm
- biosample_set_rainfall_regm
- biosample_set_salt_regm
- biosample_set_season_environment
- biosample_set_soluble_inorg_mat
- biosample_set_soluble_org_mat
- biosample_set_standing_water_regm
- biosample_set_suspend_solids
- biosample_set_volatile_org_comp
- biosample_set_water_temp_regm
- biosample_set_watering_regm
- study_set_study_image
range: string
multivalued: false
term_alternative_identifiers:
name: term_alternative_identifiers
description: A list of alternative identifiers for the entity. Flattened from
nested slot 'term.alternative_identifiers'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: uriorcurie
required: false
multivalued: true
term_alternative_names:
name: term_alternative_names
description: A list of alternative names used to refer to the entity. The distinction
between name and alternative names is application-specific. This should not
be used for identifers which have their own slots (e.g., bioproject:PRJNA406974)
Flattened from nested slot 'term.alternative_names'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: true
term_definition:
name: term_definition
description: The definition of the ontology term as provided by the ontology.
Flattened from nested slot 'term.definition'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: false
term_description:
name: term_description
description: a human-readable description of a thing Flattened from nested slot
'term.description'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: false
term_id:
name: term_id
description: A unique identifier for a thing. Must be either a CURIE shorthand
for a URI or a complete URI Flattened from nested slot 'term.id'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: uriorcurie
required: false
multivalued: false
term_is_obsolete:
name: term_is_obsolete
description: A boolean value indicating whether the ontology term is obsolete.
Flattened from nested slot 'term.is_obsolete'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: boolean
required: false
multivalued: false
term_is_root:
name: term_is_root
description: A boolean value indicating whether the ontology term is a root term;
it is not a subclass of any other term. Flattened from nested slot 'term.is_root'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: boolean
required: false
multivalued: false
term_name:
name: term_name
description: A human readable label for an entity Flattened from nested slot 'term.name'.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
rank: 1000
owner: biosample_set_chem_administration
domain_of:
- biosample_set_chem_administration
range: string
required: false
multivalued: false
type:
name: type
description: the class_uri of the class that has been instantiated
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
owner: biosample_set_chem_administration
domain_of:
- BiosampleFlat
- biosample_set_agrochem_addition
- biosample_set_air_temp_regm
- biosample_set_antibiotic_regm
- biosample_set_atmospheric_data
- biosample_set_biomass
- biosample_set_chem_administration
- biosample_set_chem_mutagen
- biosample_set_climate_environment
- biosample_set_diether_lipids
- biosample_set_emulsions
- biosample_set_fertilizer_regm
- biosample_set_fungicide_regm
- biosample_set_gaseous_environment
- biosample_set_gaseous_substances
- biosample_set_gravity
- biosample_set_growth_hormone_regm
- biosample_set_heavy_metals
- biosample_set_herbicide_regm
- biosample_set_host_diet
- biosample_set_humidity_regm
- biosample_set_inorg_particles
- biosample_set_mineral_nutr_regm
- biosample_set_misc_param
- biosample_set_n_alkanes
- biosample_set_org_particles
- biosample_set_organism_count
- biosample_set_particle_class
- biosample_set_perturbation
- biosample_set_pesticide_regm
- biosample_set_ph_regm
- biosample_set_phaeopigments
- biosample_set_phosplipid_fatt_acid
- biosample_set_pollutants
- biosample_set_radiation_regm
- biosample_set_rainfall_regm
- biosample_set_salt_regm
- biosample_set_season_environment
- biosample_set_soluble_inorg_mat
- biosample_set_soluble_org_mat
- biosample_set_standing_water_regm
- biosample_set_suspend_solids
- biosample_set_volatile_org_comp
- biosample_set_water_temp_regm
- biosample_set_watering_regm
- CalibrationInformationFlat
- CollectingBiosamplesFromSiteFlat
- collecting_biosamples_from_site_set_has_failure_categorization
- ConfigurationFlat
- configuration_set_ordered_mobile_phases
- DataGenerationFlat
- data_generation_set_has_failure_categorization
- DataObjectFlat
- FieldResearchSiteFlat
- FunctionalAnnotationAggMemberFlat
- FunctionalAnnotationFlat
- GenomeFeatureFlat
- InstrumentFlat
- ManifestFlat
- MaterialProcessingFlat
- material_processing_set_has_failure_categorization
- material_processing_set_ordered_mobile_phases
- material_processing_set_substances_used
- OrganismSampleFlat
- OrganismFlat
- organism_set_classified_as
- ProcessedSampleFlat
- StorageProcessFlat
- storage_process_set_has_failure_categorization
- storage_process_set_substances_used
- StudyFlat
- study_set_associated_dois
- study_set_has_credit_associations
- study_set_protocol_link
- study_set_study_image
- WorkflowExecutionFlat
- workflow_execution_set_has_failure_categorization
- workflow_execution_set_has_metabolite_identifications
- workflow_execution_set_mags_list
range: uriorcurie
required: true
multivalued: false
parent_id:
name: parent_id
description: Identifier of the parent 'Biosample' record.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
owner: biosample_set_chem_administration
domain_of:
- biosample_set_agrochem_addition
- biosample_set_air_temp_regm
- biosample_set_antibiotic_regm
- biosample_set_associated_studies
- biosample_set_atmospheric_data
- biosample_set_biomass
- biosample_set_chem_administration
- biosample_set_chem_mutagen
- biosample_set_climate_environment
- biosample_set_diether_lipids
- biosample_set_emulsions
- biosample_set_fertilizer_regm
- biosample_set_fungicide_regm
- biosample_set_gaseous_environment
- biosample_set_gaseous_substances
- biosample_set_gravity
- biosample_set_growth_hormone_regm
- biosample_set_heavy_metals
- biosample_set_herbicide_regm
- biosample_set_host_diet
- biosample_set_humidity_regm
- biosample_set_inorg_particles
- biosample_set_mineral_nutr_regm
- biosample_set_misc_param
- biosample_set_n_alkanes
- biosample_set_org_particles
- biosample_set_organism_count
- biosample_set_particle_class
- biosample_set_perturbation
- biosample_set_pesticide_regm
- biosample_set_ph_regm
- biosample_set_phaeopigments
- biosample_set_phosplipid_fatt_acid
- biosample_set_pollutants
- biosample_set_radiation_regm
- biosample_set_rainfall_regm
- biosample_set_salt_regm
- biosample_set_season_environment
- biosample_set_soluble_inorg_mat
- biosample_set_soluble_org_mat
- biosample_set_standing_water_regm
- biosample_set_suspend_solids
- biosample_set_volatile_org_comp
- biosample_set_water_temp_regm
- biosample_set_watering_regm
- collecting_biosamples_from_site_set_has_failure_categorization
- collecting_biosamples_from_site_set_has_input
- collecting_biosamples_from_site_set_has_output
- configuration_set_ordered_mobile_phases
- data_generation_set_associated_studies
- data_generation_set_has_failure_categorization
- data_generation_set_has_input
- data_generation_set_has_output
- data_generation_set_instrument_used
- data_object_set_in_manifest
- field_research_site_set_part_of
- material_processing_set_has_failure_categorization
- material_processing_set_has_input
- material_processing_set_has_output
- material_processing_set_instrument_used
- material_processing_set_ordered_mobile_phases
- material_processing_set_substances_used
- organism_sample_set_associated_studies
- organism_set_classified_as
- storage_process_set_has_failure_categorization
- storage_process_set_has_input
- storage_process_set_has_output
- storage_process_set_substances_used
- study_set_associated_dois
- study_set_has_credit_associations
- study_set_part_of
- study_set_protocol_link
- study_set_study_image
- workflow_execution_set_has_failure_categorization
- workflow_execution_set_has_input
- workflow_execution_set_has_metabolite_identifications
- workflow_execution_set_has_output
- workflow_execution_set_mags_list
- workflow_execution_set_uses_calibration
- workflow_execution_set_was_informed_by
range: string