Skip to content

Slot: type

URI: https://w3id.org/nmdc/nmdc-schema-flattened/type

Applicable Classes

Name Description Modifies Slot
BiosampleFlat Biological source material which can be characterized by an experiment no
BiosampleSetAgrochemAddition A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetAirTempRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetAntibioticRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetAtmosphericData A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetBiomass A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetChemAdministration A controlled term or class from an ontology Flattened tabular form of 'Contro... no
BiosampleSetChemMutagen A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetClimateEnvironment A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetDietherLipids A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetEmulsions A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetFertilizerRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetFungicideRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetGaseousEnvironment A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetGaseousSubstances A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetGravity A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetGrowthHormoneRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetHeavyMetals A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetHerbicideRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetHostDiet A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetHumidityRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetInorgParticles A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetMineralNutrRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetMiscParam A structured record of data that doesn't fit nicely within the constraints of... no
BiosampleSetNAlkanes A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetOrgParticles A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetOrganismCount A simple quantity, e no
BiosampleSetParticleClass A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetPerturbation A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetPesticideRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetPhRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetPhaeopigments A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetPhosplipidFattAcid A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetPollutants A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetRadiationRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetRainfallRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetSaltRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetSeasonEnvironment A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetSolubleInorgMat A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetSolubleOrgMat A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetStandingWaterRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetSuspendSolids A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetVolatileOrgComp A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetWaterTempRegm A basic string value Flattened tabular form of 'TextValue' no
BiosampleSetWateringRegm A basic string value Flattened tabular form of 'TextValue' no
CalibrationInformationFlat A calibration object that is associated with a process no
CollectingBiosamplesFromSiteFlat Flattened tabular form of 'CollectingBiosamplesFromSite' no
CollectingBiosamplesFromSiteSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
ConfigurationFlat A set of parameters that define the actions of a process and is shared among ... no
ConfigurationSetOrderedMobilePhases A fluid mixture of substances that flow though a chromatographic stationary p... no
DataGenerationFlat The methods and processes used to generate omics data from a biosample or org... no
DataGenerationSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
DataObjectFlat An object that primarily consists of symbols that represent information no
FieldResearchSiteFlat A site, outside of a laboratory, from which biosamples may be collected no
FunctionalAnnotationAggMemberFlat This class is used to store aggregated results from workflows which produce f... no
FunctionalAnnotationFlat An assignment of a function term (e no
GenomeFeatureFlat A feature localized to an interval along a genome Flattened tabular form of '... no
InstrumentFlat A material entity that is designed to perform a function in a scientific inve... no
ManifestFlat A qualified collection of DataObjects that can be analyzed together in the sa... no
MaterialProcessingFlat A process that takes one or more samples as inputs and generates one or more ... no
MaterialProcessingSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
MaterialProcessingSetOrderedMobilePhases A fluid mixture of substances that flow though a chromatographic stationary p... no
MaterialProcessingSetSubstancesUsed A portion of any matter of defined composition that has discrete existence, w... no
OrganismSampleFlat A material sample in which all cells are expected to share the same genome no
OrganismFlat A material entity that is a living or once-living individual no
OrganismSetClassifiedAs A taxonomy term from NCBI Taxonomy no
ProcessedSampleFlat Flattened tabular form of 'ProcessedSample' no
StorageProcessFlat A planned process with the objective to preserve and protect material entitie... no
StorageProcessSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
StorageProcessSetSubstancesUsed A portion of any matter of defined composition that has discrete existence, w... no
StudyFlat A study summarizes the overall goal of a research initiative and outlines the... no
StudySetAssociatedDois A centrally registered identifier symbol used to uniquely identify objects gi... no
StudySetHasCreditAssociations This class supports binding associated researchers to studies no
StudySetProtocolLink Flattened tabular form of 'Protocol' no
StudySetStudyImage An attribute value representing an image no
WorkflowExecutionFlat Represents an instance of an execution of a particular workflow Flattened tab... no
WorkflowExecutionSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
WorkflowExecutionSetHasMetaboliteIdentifications This is used to link a metabolomics analysis workflow to a specific metabolit... no
WorkflowExecutionSetMagsList Flattened tabular form of 'MagBin' no

Properties

Type and Range

Property Value
Range String
Domain Of BiosampleFlat, BiosampleSetAgrochemAddition, BiosampleSetAirTempRegm, BiosampleSetAntibioticRegm, BiosampleSetAtmosphericData, BiosampleSetBiomass, BiosampleSetChemAdministration, BiosampleSetChemMutagen, BiosampleSetClimateEnvironment, BiosampleSetDietherLipids, BiosampleSetEmulsions, BiosampleSetFertilizerRegm, BiosampleSetFungicideRegm, BiosampleSetGaseousEnvironment, BiosampleSetGaseousSubstances, BiosampleSetGravity, BiosampleSetGrowthHormoneRegm, BiosampleSetHeavyMetals, BiosampleSetHerbicideRegm, BiosampleSetHostDiet, BiosampleSetHumidityRegm, BiosampleSetInorgParticles, BiosampleSetMineralNutrRegm, BiosampleSetMiscParam, BiosampleSetNAlkanes, BiosampleSetOrgParticles, BiosampleSetOrganismCount, BiosampleSetParticleClass, BiosampleSetPerturbation, BiosampleSetPesticideRegm, BiosampleSetPhRegm, BiosampleSetPhaeopigments, BiosampleSetPhosplipidFattAcid, BiosampleSetPollutants, BiosampleSetRadiationRegm, BiosampleSetRainfallRegm, BiosampleSetSaltRegm, BiosampleSetSeasonEnvironment, BiosampleSetSolubleInorgMat, BiosampleSetSolubleOrgMat, BiosampleSetStandingWaterRegm, BiosampleSetSuspendSolids, BiosampleSetVolatileOrgComp, BiosampleSetWaterTempRegm, BiosampleSetWateringRegm, CalibrationInformationFlat, CollectingBiosamplesFromSiteFlat, CollectingBiosamplesFromSiteSetHasFailureCategorization, ConfigurationFlat, ConfigurationSetOrderedMobilePhases, DataGenerationFlat, DataGenerationSetHasFailureCategorization, DataObjectFlat, FieldResearchSiteFlat, FunctionalAnnotationAggMemberFlat, FunctionalAnnotationFlat, GenomeFeatureFlat, InstrumentFlat, ManifestFlat, MaterialProcessingFlat, MaterialProcessingSetHasFailureCategorization, MaterialProcessingSetOrderedMobilePhases, MaterialProcessingSetSubstancesUsed, OrganismSampleFlat, OrganismFlat, OrganismSetClassifiedAs, ProcessedSampleFlat, StorageProcessFlat, StorageProcessSetHasFailureCategorization, StorageProcessSetSubstancesUsed, StudyFlat, StudySetAssociatedDois, StudySetHasCreditAssociations, StudySetProtocolLink, StudySetStudyImage, WorkflowExecutionFlat, WorkflowExecutionSetHasFailureCategorization, WorkflowExecutionSetHasMetaboliteIdentifications, WorkflowExecutionSetMagsList

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Mappings

Mapping Type Mapped Value
self https://w3id.org/nmdc/nmdc-schema-flattened/type
native https://w3id.org/nmdc/nmdc-schema-flattened/type

LinkML Source

name: type
domain_of:
- BiosampleFlat
- biosample_set_agrochem_addition
- biosample_set_air_temp_regm
- biosample_set_antibiotic_regm
- biosample_set_atmospheric_data
- biosample_set_biomass
- biosample_set_chem_administration
- biosample_set_chem_mutagen
- biosample_set_climate_environment
- biosample_set_diether_lipids
- biosample_set_emulsions
- biosample_set_fertilizer_regm
- biosample_set_fungicide_regm
- biosample_set_gaseous_environment
- biosample_set_gaseous_substances
- biosample_set_gravity
- biosample_set_growth_hormone_regm
- biosample_set_heavy_metals
- biosample_set_herbicide_regm
- biosample_set_host_diet
- biosample_set_humidity_regm
- biosample_set_inorg_particles
- biosample_set_mineral_nutr_regm
- biosample_set_misc_param
- biosample_set_n_alkanes
- biosample_set_org_particles
- biosample_set_organism_count
- biosample_set_particle_class
- biosample_set_perturbation
- biosample_set_pesticide_regm
- biosample_set_ph_regm
- biosample_set_phaeopigments
- biosample_set_phosplipid_fatt_acid
- biosample_set_pollutants
- biosample_set_radiation_regm
- biosample_set_rainfall_regm
- biosample_set_salt_regm
- biosample_set_season_environment
- biosample_set_soluble_inorg_mat
- biosample_set_soluble_org_mat
- biosample_set_standing_water_regm
- biosample_set_suspend_solids
- biosample_set_volatile_org_comp
- biosample_set_water_temp_regm
- biosample_set_watering_regm
- CalibrationInformationFlat
- CollectingBiosamplesFromSiteFlat
- collecting_biosamples_from_site_set_has_failure_categorization
- ConfigurationFlat
- configuration_set_ordered_mobile_phases
- DataGenerationFlat
- data_generation_set_has_failure_categorization
- DataObjectFlat
- FieldResearchSiteFlat
- FunctionalAnnotationAggMemberFlat
- FunctionalAnnotationFlat
- GenomeFeatureFlat
- InstrumentFlat
- ManifestFlat
- MaterialProcessingFlat
- material_processing_set_has_failure_categorization
- material_processing_set_ordered_mobile_phases
- material_processing_set_substances_used
- OrganismSampleFlat
- OrganismFlat
- organism_set_classified_as
- ProcessedSampleFlat
- StorageProcessFlat
- storage_process_set_has_failure_categorization
- storage_process_set_substances_used
- StudyFlat
- study_set_associated_dois
- study_set_has_credit_associations
- study_set_protocol_link
- study_set_study_image
- WorkflowExecutionFlat
- workflow_execution_set_has_failure_categorization
- workflow_execution_set_has_metabolite_identifications
- workflow_execution_set_mags_list
range: string