Skip to content

Slot: type

URI: https://w3id.org/nmdc/nmdc-schema-flattened/type

Applicable Classes

Name Description Modifies Slot
BiosampleFlat Biological source material which can be characterized by an experiment no
BiosampleSetChemAdministration A controlled term or class from an ontology Flattened tabular form of 'Contro... no
BiosampleSetMiscParam A structured record of data that doesn't fit nicely within the constraints of... no
BiosampleSetOrganismCount A simple quantity, e no
CalibrationInformationFlat A calibration object that is associated with a process no
CollectingBiosamplesFromSiteFlat Flattened tabular form of 'CollectingBiosamplesFromSite' no
CollectingBiosamplesFromSiteSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
ConfigurationFlat A set of parameters that define the actions of a process and is shared among ... no
ConfigurationSetOrderedMobilePhases A fluid mixture of substances that flow though a chromatographic stationary p... no
ConfigurationSetOrderedMobilePhasesSubstancesUsed A portion of any matter of defined composition that has discrete existence, w... no
DataGenerationFlat The methods and processes used to generate omics data from a biosample or org... no
DataGenerationSetHasCreditAssociations This class supports binding an agent (a Person or an Organization) to a study... no
DataGenerationSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
DataObjectFlat An object that primarily consists of symbols that represent information no
FieldResearchSiteFlat A site, outside of a laboratory, from which biosamples may be collected no
FunctionalAnnotationAggMemberFlat This class is used to store aggregated results from workflows which produce f... no
FunctionalAnnotationFlat An assignment of a function term (e no
GenomeFeatureFlat A feature localized to an interval along a genome Flattened tabular form of '... no
InstrumentFlat A material entity that is designed to perform a function in a scientific inve... no
ManifestFlat A qualified collection of DataObjects that can be analyzed together in the sa... no
MaterialProcessingFlat A process that takes one or more samples as inputs and generates one or more ... no
MaterialProcessingSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
MaterialProcessingSetOrderedMobilePhases A fluid mixture of substances that flow though a chromatographic stationary p... no
MaterialProcessingSetOrderedMobilePhasesSubstancesUsed A portion of any matter of defined composition that has discrete existence, w... no
MaterialProcessingSetSubstancesUsed A portion of any matter of defined composition that has discrete existence, w... no
OrganismSampleFlat A material sample in which all cells are expected to share the same genome no
OrganismFlat A material entity that is a living or once-living individual no
OrganismSetClassifiedAs A taxonomy term from NCBI Taxonomy no
ProcessedSampleFlat Flattened tabular form of 'ProcessedSample' no
StorageProcessFlat A planned process with the objective to preserve and protect material entitie... no
StorageProcessSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
StorageProcessSetSubstancesUsed A portion of any matter of defined composition that has discrete existence, w... no
StudyFlat A study summarizes the overall goal of a research initiative and outlines the... no
StudySetAssociatedDois A centrally registered identifier symbol used to uniquely identify objects gi... no
StudySetHasCreditAssociations This class supports binding an agent (a Person or an Organization) to a study... no
StudySetProtocolLink Flattened tabular form of 'Protocol' no
StudySetStudyImage An attribute value representing an image no
WorkflowExecutionFlat Represents an instance of an execution of a particular workflow Flattened tab... no
WorkflowExecutionSetHasFailureCategorization Flattened tabular form of 'FailureCategorization' no
WorkflowExecutionSetHasMetaboliteIdentifications This is used to link a metabolomics analysis workflow to a specific metabolit... no
WorkflowExecutionSetMagsList Flattened tabular form of 'MagBin' no

Properties

Type and Range

Property Value
Range String
Domain Of BiosampleFlat, BiosampleSetChemAdministration, BiosampleSetMiscParam, BiosampleSetOrganismCount, CalibrationInformationFlat, CollectingBiosamplesFromSiteFlat, CollectingBiosamplesFromSiteSetHasFailureCategorization, ConfigurationFlat, ConfigurationSetOrderedMobilePhases, ConfigurationSetOrderedMobilePhasesSubstancesUsed, DataGenerationFlat, DataGenerationSetHasCreditAssociations, DataGenerationSetHasFailureCategorization, DataObjectFlat, FieldResearchSiteFlat, FunctionalAnnotationAggMemberFlat, FunctionalAnnotationFlat, GenomeFeatureFlat, InstrumentFlat, ManifestFlat, MaterialProcessingFlat, MaterialProcessingSetHasFailureCategorization, MaterialProcessingSetOrderedMobilePhases, MaterialProcessingSetOrderedMobilePhasesSubstancesUsed, MaterialProcessingSetSubstancesUsed, OrganismSampleFlat, OrganismFlat, OrganismSetClassifiedAs, ProcessedSampleFlat, StorageProcessFlat, StorageProcessSetHasFailureCategorization, StorageProcessSetSubstancesUsed, StudyFlat, StudySetAssociatedDois, StudySetHasCreditAssociations, StudySetProtocolLink, StudySetStudyImage, WorkflowExecutionFlat, WorkflowExecutionSetHasFailureCategorization, WorkflowExecutionSetHasMetaboliteIdentifications, WorkflowExecutionSetMagsList

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Mappings

Mapping Type Mapped Value
self https://w3id.org/nmdc/nmdc-schema-flattened/type
native https://w3id.org/nmdc/nmdc-schema-flattened/type

LinkML Source

name: type
domain_of:
- BiosampleFlat
- biosample_set_chem_administration
- biosample_set_misc_param
- biosample_set_organism_count
- CalibrationInformationFlat
- CollectingBiosamplesFromSiteFlat
- collecting_biosamples_from_site_set_has_failure_categorization
- ConfigurationFlat
- configuration_set_ordered_mobile_phases
- configuration_set_ordered_mobile_phases_substances_used
- DataGenerationFlat
- data_generation_set_has_credit_associations
- data_generation_set_has_failure_categorization
- DataObjectFlat
- FieldResearchSiteFlat
- FunctionalAnnotationAggMemberFlat
- FunctionalAnnotationFlat
- GenomeFeatureFlat
- InstrumentFlat
- ManifestFlat
- MaterialProcessingFlat
- material_processing_set_has_failure_categorization
- material_processing_set_ordered_mobile_phases
- material_processing_set_ordered_mobile_phases_substances_used
- material_processing_set_substances_used
- OrganismSampleFlat
- OrganismFlat
- organism_set_classified_as
- ProcessedSampleFlat
- StorageProcessFlat
- storage_process_set_has_failure_categorization
- storage_process_set_substances_used
- StudyFlat
- study_set_associated_dois
- study_set_has_credit_associations
- study_set_protocol_link
- study_set_study_image
- WorkflowExecutionFlat
- workflow_execution_set_has_failure_categorization
- workflow_execution_set_has_metabolite_identifications
- workflow_execution_set_mags_list
range: string