Class: BiosampleSetMiscParam

A structured record of data that doesn't fit nicely within the constraints of other NMDC AttributeValues. Uses primitive ranges only. Flattened tabular form of 'PropertyAssertion'. Attributes are the union of base-class slots and slots from concrete subclasses of 'PropertyAssertion' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetMiscParam

 classDiagram
    class BiosampleSetMiscParam
    click BiosampleSetMiscParam href "../BiosampleSetMiscParam/"
      BiosampleSetMiscParam : has_attribute_id

      BiosampleSetMiscParam : has_attribute_label

      BiosampleSetMiscParam : has_boolean_value

      BiosampleSetMiscParam : has_datetime_value

      BiosampleSetMiscParam : has_maximum_numeric_value

      BiosampleSetMiscParam : has_minimum_numeric_value

      BiosampleSetMiscParam : has_numeric_value

      BiosampleSetMiscParam : has_quantity_kind_id

      BiosampleSetMiscParam : has_raw_value

      BiosampleSetMiscParam : has_unit

      BiosampleSetMiscParam : has_value_term_id

      BiosampleSetMiscParam : parent_id

      BiosampleSetMiscParam : type

Slots

Name	Cardinality and Range	Description	Inheritance
has_attribute_id	0..1 Uriorcurie	CURIE or IRI for the property (MIxS slot, NMDC slot, ENVO/OBI term, etc	direct
has_attribute_label	0..1 String	Human-readable label for the property, taken from its MIxS slot, NMDC slot, o...	direct
has_boolean_value	0..1 Boolean	Links a quantity value to a boolean	direct
has_datetime_value	0..1 String	Date-time value for the property in ISO-8601 format	direct
has_maximum_numeric_value	0..1 Decimal	The maximum value part, expressed as number, of the quantity value when the v...	direct
has_minimum_numeric_value	0..1 Decimal	The minimum value part, expressed as number, of the quantity value when the v...	direct
has_numeric_value	0..1 Decimal	Links a quantity value to a number	direct
has_quantity_kind_id	0..1 Uriorcurie	Optional CURIE or IRI for the physical quantity kind, which is a qudt:Quantit...	direct
has_raw_value	1 String	Original contributor string representation (unparsed)	direct
has_unit	0..1 String	UCUM unit code (required only when numeric value is present)	direct
has_value_term_id	0..1 Uriorcurie	CURIE or IRI for categorical values (ENVO, PATO, METPO, etc	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	direct
parent_id	0..1 String	Identifier of the parent 'Biosample' record	direct

Identifier and Mapping Information

Annotations

property	value
table_name	biosample_set_misc_param
source_class	Biosample

Schema Source

from schema: https://w3id.org/nmdc/nmdc-schema-flattened

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetMiscParam
native	https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetMiscParam

LinkML Source

Direct

name: biosample_set_misc_param
annotations:
  table_name:
    tag: table_name
    value: biosample_set_misc_param
  source_class:
    tag: source_class
    value: Biosample
description: A structured record of data that doesn't fit nicely within the constraints
  of other NMDC AttributeValues. Uses primitive ranges only. Flattened tabular form
  of 'PropertyAssertion'. Attributes are the union of base-class slots and slots from
  concrete subclasses of 'PropertyAssertion' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  has_attribute_id:
    name: has_attribute_id
    description: CURIE or IRI for the property (MIxS slot, NMDC slot, ENVO/OBI term,
      etc.).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    range: uriorcurie
    multivalued: false
  has_attribute_label:
    name: has_attribute_label
    description: Human-readable label for the property, taken from its MIxS slot,
      NMDC slot, or ontology term (ENVO, OBI, etc.) label.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    range: string
    multivalued: false
  has_boolean_value:
    name: has_boolean_value
    description: Links a quantity value to a boolean
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    range: boolean
    multivalued: false
  has_datetime_value:
    name: has_datetime_value
    description: Date-time value for the property in ISO-8601 format.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    range: string
    multivalued: false
  has_maximum_numeric_value:
    name: has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_minimum_numeric_value:
    name: has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_numeric_value:
    name: has_numeric_value
    description: Links a quantity value to a number
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_quantity_kind_id:
    name: has_quantity_kind_id
    description: Optional CURIE or IRI for the physical quantity kind, which is a
      qudt:QuantityKind.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    range: uriorcurie
    multivalued: false
  has_raw_value:
    name: has_raw_value
    description: Original contributor string representation (unparsed)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - study_set_study_image
    range: string
    required: true
    multivalued: false
  has_unit:
    name: has_unit
    description: UCUM unit code (required only when numeric value is present)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: string
    required: false
    multivalued: false
  has_value_term_id:
    name: has_value_term_id
    description: CURIE or IRI for categorical values (ENVO, PATO, METPO, etc.).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - biosample_set_misc_param
    range: uriorcurie
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Biosample' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string

Induced

name: biosample_set_misc_param
annotations:
  table_name:
    tag: table_name
    value: biosample_set_misc_param
  source_class:
    tag: source_class
    value: Biosample
description: A structured record of data that doesn't fit nicely within the constraints
  of other NMDC AttributeValues. Uses primitive ranges only. Flattened tabular form
  of 'PropertyAssertion'. Attributes are the union of base-class slots and slots from
  concrete subclasses of 'PropertyAssertion' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  has_attribute_id:
    name: has_attribute_id
    description: CURIE or IRI for the property (MIxS slot, NMDC slot, ENVO/OBI term,
      etc.).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    range: uriorcurie
    multivalued: false
  has_attribute_label:
    name: has_attribute_label
    description: Human-readable label for the property, taken from its MIxS slot,
      NMDC slot, or ontology term (ENVO, OBI, etc.) label.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    range: string
    multivalued: false
  has_boolean_value:
    name: has_boolean_value
    description: Links a quantity value to a boolean
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    range: boolean
    multivalued: false
  has_datetime_value:
    name: has_datetime_value
    description: Date-time value for the property in ISO-8601 format.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    range: string
    multivalued: false
  has_maximum_numeric_value:
    name: has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_minimum_numeric_value:
    name: has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_numeric_value:
    name: has_numeric_value
    description: Links a quantity value to a number
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_quantity_kind_id:
    name: has_quantity_kind_id
    description: Optional CURIE or IRI for the physical quantity kind, which is a
      qudt:QuantityKind.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    range: uriorcurie
    multivalued: false
  has_raw_value:
    name: has_raw_value
    description: Original contributor string representation (unparsed)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - study_set_study_image
    range: string
    required: true
    multivalued: false
  has_unit:
    name: has_unit
    description: UCUM unit code (required only when numeric value is present)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: string
    required: false
    multivalued: false
  has_value_term_id:
    name: has_value_term_id
    description: CURIE or IRI for categorical values (ENVO, PATO, METPO, etc.).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_misc_param
    range: uriorcurie
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_misc_param
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Biosample' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_misc_param
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string