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Class: CollectingBiosamplesFromSiteSetHasFailureCategorization

Flattened tabular form of 'FailureCategorization'. Attributes are the union of base-class slots and slots from concrete subclasses of 'FailureCategorization' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/CollectingBiosamplesFromSiteSetHasFailureCategorization

 classDiagram
    class CollectingBiosamplesFromSiteSetHasFailureCategorization
    click CollectingBiosamplesFromSiteSetHasFailureCategorization href "../CollectingBiosamplesFromSiteSetHasFailureCategorization/"
      CollectingBiosamplesFromSiteSetHasFailureCategorization : parent_id

      CollectingBiosamplesFromSiteSetHasFailureCategorization : qc_failure_what





        CollectingBiosamplesFromSiteSetHasFailureCategorization --> "0..1" FailureWhatEnum : qc_failure_what
        click FailureWhatEnum href "../FailureWhatEnum/"



      CollectingBiosamplesFromSiteSetHasFailureCategorization : qc_failure_where





        CollectingBiosamplesFromSiteSetHasFailureCategorization --> "0..1" FailureWhereEnum : qc_failure_where
        click FailureWhereEnum href "../FailureWhereEnum/"



      CollectingBiosamplesFromSiteSetHasFailureCategorization : type

Slots

Name Cardinality and Range Description Inheritance
qc_failure_what 0..1
FailureWhatEnum		 Provides a summary about what caused a lab or workflow process to fail direct
qc_failure_where 0..1
FailureWhereEnum		 Describes the nmdc schema class that corresonds to where the failure occurred direct
type 1
Uriorcurie		 the class_uri of the class that has been instantiated direct
parent_id 0..1
String		 Identifier of the parent 'CollectingBiosamplesFromSite' record direct

Identifier and Mapping Information

Annotations

property value
table_name collecting_biosamples_from_site_set_has_failure_categorization
source_class CollectingBiosamplesFromSite

Schema Source

Mappings

Mapping Type Mapped Value
self https://w3id.org/nmdc/nmdc-schema-flattened/CollectingBiosamplesFromSiteSetHasFailureCategorization
native https://w3id.org/nmdc/nmdc-schema-flattened/CollectingBiosamplesFromSiteSetHasFailureCategorization

LinkML Source

Direct

name: collecting_biosamples_from_site_set_has_failure_categorization
annotations:
  table_name:
    tag: table_name
    value: collecting_biosamples_from_site_set_has_failure_categorization
  source_class:
    tag: source_class
    value: CollectingBiosamplesFromSite
description: Flattened tabular form of 'FailureCategorization'. Attributes are the
  union of base-class slots and slots from concrete subclasses of 'FailureCategorization'
  that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  qc_failure_what:
    name: qc_failure_what
    description: Provides a summary about what caused a lab or workflow process to
      fail
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - collecting_biosamples_from_site_set_has_failure_categorization
    - data_generation_set_has_failure_categorization
    - material_processing_set_has_failure_categorization
    - storage_process_set_has_failure_categorization
    - workflow_execution_set_has_failure_categorization
    range: FailureWhatEnum
    multivalued: false
  qc_failure_where:
    name: qc_failure_where
    description: Describes the nmdc schema class that corresonds to where the failure
      occurred. Most commonly this would be the same as Class that generated the results.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - collecting_biosamples_from_site_set_has_failure_categorization
    - data_generation_set_has_failure_categorization
    - material_processing_set_has_failure_categorization
    - storage_process_set_has_failure_categorization
    - workflow_execution_set_has_failure_categorization
    range: FailureWhereEnum
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'CollectingBiosamplesFromSite' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string

Induced

name: collecting_biosamples_from_site_set_has_failure_categorization
annotations:
  table_name:
    tag: table_name
    value: collecting_biosamples_from_site_set_has_failure_categorization
  source_class:
    tag: source_class
    value: CollectingBiosamplesFromSite
description: Flattened tabular form of 'FailureCategorization'. Attributes are the
  union of base-class slots and slots from concrete subclasses of 'FailureCategorization'
  that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  qc_failure_what:
    name: qc_failure_what
    description: Provides a summary about what caused a lab or workflow process to
      fail
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: collecting_biosamples_from_site_set_has_failure_categorization
    domain_of:
    - collecting_biosamples_from_site_set_has_failure_categorization
    - data_generation_set_has_failure_categorization
    - material_processing_set_has_failure_categorization
    - storage_process_set_has_failure_categorization
    - workflow_execution_set_has_failure_categorization
    range: FailureWhatEnum
    multivalued: false
  qc_failure_where:
    name: qc_failure_where
    description: Describes the nmdc schema class that corresonds to where the failure
      occurred. Most commonly this would be the same as Class that generated the results.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: collecting_biosamples_from_site_set_has_failure_categorization
    domain_of:
    - collecting_biosamples_from_site_set_has_failure_categorization
    - data_generation_set_has_failure_categorization
    - material_processing_set_has_failure_categorization
    - storage_process_set_has_failure_categorization
    - workflow_execution_set_has_failure_categorization
    range: FailureWhereEnum
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: collecting_biosamples_from_site_set_has_failure_categorization
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'CollectingBiosamplesFromSite' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: collecting_biosamples_from_site_set_has_failure_categorization
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string