Class: StudyFlat

name: StudyFlat
annotations:
  table_name:
    tag: table_name
    value: study_set
  source_class:
    tag: source_class
    value: Study
description: A study summarizes the overall goal of a research initiative and outlines
  the key objective of its underlying projects. Flattened tabular form of 'Study'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'Study' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_descriptions:
    name: alternative_descriptions
    description: A list of alternative descriptions for the entity. The distinction
      between description and alternative descriptions is application-specific.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  alternative_identifiers:
    name: alternative_identifiers
    description: Unique identifier for a study submitted to additional resources.
      Matches that which has been submitted to NMDC
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  alternative_names:
    name: alternative_names
    description: A list of alternative names used to refer to the entity. The distinction
      between name and alternative names is application-specific.  This should not
      be used for identifers which have their own slots (e.g., bioproject:PRJNA406974)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - organism_set_classified_as
    - StudyFlat
    range: string
    multivalued: true
  alternative_titles:
    name: alternative_titles
    description: A list of alternative titles for the entity. The distinction between
      title and alternative titles is application-specific.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  description:
    name: description
    description: A brief, link-free summary of a Study
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  ecosystem:
    name: ecosystem
    description: An ecosystem is a combination of a physical environment (abiotic
      factors) and all the organisms (biotic factors) that interact with this environment.
      Ecosystem is in position 1/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  ecosystem_category:
    name: ecosystem_category
    description: Ecosystem categories represent divisions within the ecosystem based
      on specific characteristics of the environment from where an organism or sample
      is isolated. Ecosystem category is in position 2/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  ecosystem_subtype:
    name: ecosystem_subtype
    description: Ecosystem subtypes represent further subdivision of Ecosystem types
      into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD
      path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  ecosystem_type:
    name: ecosystem_type
    description: Ecosystem types represent things having common characteristics within
      the Ecosystem Category. These common characteristics based grouping is still
      broad but specific to the characteristics of a given environment. Ecosystem
      type is in position 3/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  emsl_project_identifiers:
    name: emsl_project_identifiers
    description: Identifiers that link a NMDC study to the EMSL user facility website
      hosting the project description of an EMSL user project
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  funding_sources:
    name: funding_sources
    description: A list of organizations, along with the award numbers, that underwrite
      financial support for projects of a particular type. Typically, they process
      applications and award funds to the chosen qualified applicants.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  gnps_task_identifiers:
    name: gnps_task_identifiers
    description: identifiers that link a NMDC study to a web-based report about metabolomics
      analysis progress and results
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  gold_study_identifiers:
    name: gold_study_identifiers
    description: identifiers for corresponding project(s) in GOLD
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  homepage_website:
    name: homepage_website
    description: The website address (URL) of an entity's homepage.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  insdc_bioproject_identifiers:
    name: insdc_bioproject_identifiers
    description: Unique identifier for a bioproject submitted to INSDC that relates
      to the NMDC submitted study.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: external_identifier
    multivalued: true
  jgi_portal_study_identifiers:
    name: jgi_portal_study_identifiers
    description: Identifiers that link a NMDC study to a website hosting raw and analyzed
      data for a JGI proposal.  The suffix of the curie can used to query the GOLD
      API and is interoperable with an award DOI from OSTI and a GOLD study identifier.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  mgnify_project_identifiers:
    name: mgnify_project_identifiers
    description: identifiers for corresponding project in MGnify
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  neon_study_identifiers:
    name: neon_study_identifiers
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  notes:
    name: notes
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  objective:
    name: objective
    description: The scientific objectives associated with the entity. It SHOULD correspond
      to scientific norms for objectives field in a structured abstract.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  part_of:
    name: part_of
    description: Links a study or consortium to a parent (or umbrella) study or consortium.
      Reference by identifier; original range was class 'Study'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - FieldResearchSiteFlat
    - field_research_site_set_part_of
    - StudyFlat
    - study_set_part_of
    range: string
    multivalued: true
  principal_investigator_email:
    name: principal_investigator_email
    description: An email address for an entity such as a person. This should be the
      primary email address used. Flattened from nested slot 'principal_investigator.email'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_has_raw_value:
    name: principal_investigator_has_raw_value
    description: The full name of the Investigator in format FIRST LAST. Flattened
      from nested slot 'principal_investigator.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_name:
    name: principal_investigator_name
    description: The full name of the Investigator. It should follow the format FIRST
      [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional.
      Flattened from nested slot 'principal_investigator.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_orcid:
    name: principal_investigator_orcid
    description: The ORCID of a person. Flattened from nested slot 'principal_investigator.orcid'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_profile_image_url:
    name: principal_investigator_profile_image_url
    description: A url that points to an image of a person. Flattened from nested
      slot 'principal_investigator.profile_image_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_websites:
    name: principal_investigator_websites
    description: A list of websites that are associated with the entity. Flattened
      from nested slot 'principal_investigator.websites'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  provenance_metadata_add_date:
    name: provenance_metadata_add_date
    description: The date and time at which a record was added to the NMDC database.
      Flattened from nested slot 'provenance_metadata.add_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_git_url:
    name: provenance_metadata_git_url
    description: The url of the software repository used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.git_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  provenance_metadata_mod_date:
    name: provenance_metadata_mod_date
    description: The date and time at which a record was last modified in the NMDC
      database. Flattened from nested slot 'provenance_metadata.mod_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_source_system_of_record:
    name: provenance_metadata_source_system_of_record
    description: Identifies the system of origin for a record Flattened from nested
      slot 'provenance_metadata.source_system_of_record'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: SourceSystemEnum
    required: false
    multivalued: false
  provenance_metadata_submission_portal_identifier:
    name: provenance_metadata_submission_portal_identifier
    description: The UUID of the NMDC Submission Portal entry that generated this
      record. Flattened from nested slot 'provenance_metadata.submission_portal_identifier'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  provenance_metadata_version:
    name: provenance_metadata_version
    description: The version tag of the software used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.version'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  related_identifiers:
    name: related_identifiers
    description: Unique identifier for a study submitted to additional resources.
      Similar, but not necessarily identical to that which has been submitted to NMDC
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  specific_ecosystem:
    name: specific_ecosystem
    description: Specific ecosystems represent specific features of the environment
      like aphotic zone in an ocean or gastric mucosa within a host digestive system.
      Specific ecosystem is in position 5/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  study_category:
    name: study_category
    description: The type of research initiative
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: StudyCategoryEnum
    required: true
    multivalued: false
  title:
    name: title
    description: A name given to the entity that differs from the name/label programmatically
      assigned to it.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  websites:
    name: websites
    description: A list of websites that are associated with the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - StudyFlat
    range: string
    multivalued: true

name: StudyFlat
annotations:
  table_name:
    tag: table_name
    value: study_set
  source_class:
    tag: source_class
    value: Study
description: A study summarizes the overall goal of a research initiative and outlines
  the key objective of its underlying projects. Flattened tabular form of 'Study'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'Study' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_descriptions:
    name: alternative_descriptions
    description: A list of alternative descriptions for the entity. The distinction
      between description and alternative descriptions is application-specific.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  alternative_identifiers:
    name: alternative_identifiers
    description: Unique identifier for a study submitted to additional resources.
      Matches that which has been submitted to NMDC
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  alternative_names:
    name: alternative_names
    description: A list of alternative names used to refer to the entity. The distinction
      between name and alternative names is application-specific.  This should not
      be used for identifers which have their own slots (e.g., bioproject:PRJNA406974)
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - organism_set_classified_as
    - StudyFlat
    range: string
    multivalued: true
  alternative_titles:
    name: alternative_titles
    description: A list of alternative titles for the entity. The distinction between
      title and alternative titles is application-specific.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  description:
    name: description
    description: A brief, link-free summary of a Study
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  ecosystem:
    name: ecosystem
    description: An ecosystem is a combination of a physical environment (abiotic
      factors) and all the organisms (biotic factors) that interact with this environment.
      Ecosystem is in position 1/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  ecosystem_category:
    name: ecosystem_category
    description: Ecosystem categories represent divisions within the ecosystem based
      on specific characteristics of the environment from where an organism or sample
      is isolated. Ecosystem category is in position 2/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  ecosystem_subtype:
    name: ecosystem_subtype
    description: Ecosystem subtypes represent further subdivision of Ecosystem types
      into more distinct subtypes. Ecosystem subtype is in position 4/5 in a GOLD
      path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  ecosystem_type:
    name: ecosystem_type
    description: Ecosystem types represent things having common characteristics within
      the Ecosystem Category. These common characteristics based grouping is still
      broad but specific to the characteristics of a given environment. Ecosystem
      type is in position 3/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  emsl_project_identifiers:
    name: emsl_project_identifiers
    description: Identifiers that link a NMDC study to the EMSL user facility website
      hosting the project description of an EMSL user project
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  funding_sources:
    name: funding_sources
    description: A list of organizations, along with the award numbers, that underwrite
      financial support for projects of a particular type. Typically, they process
      applications and award funds to the chosen qualified applicants.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  gnps_task_identifiers:
    name: gnps_task_identifiers
    description: identifiers that link a NMDC study to a web-based report about metabolomics
      analysis progress and results
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  gold_study_identifiers:
    name: gold_study_identifiers
    description: identifiers for corresponding project(s) in GOLD
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  homepage_website:
    name: homepage_website
    description: The website address (URL) of an entity's homepage.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  insdc_bioproject_identifiers:
    name: insdc_bioproject_identifiers
    description: Unique identifier for a bioproject submitted to INSDC that relates
      to the NMDC submitted study.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: external_identifier
    multivalued: true
  jgi_portal_study_identifiers:
    name: jgi_portal_study_identifiers
    description: Identifiers that link a NMDC study to a website hosting raw and analyzed
      data for a JGI proposal.  The suffix of the curie can used to query the GOLD
      API and is interoperable with an award DOI from OSTI and a GOLD study identifier.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  mgnify_project_identifiers:
    name: mgnify_project_identifiers
    description: identifiers for corresponding project in MGnify
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  neon_study_identifiers:
    name: neon_study_identifiers
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: external_identifier
    multivalued: true
  notes:
    name: notes
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  objective:
    name: objective
    description: The scientific objectives associated with the entity. It SHOULD correspond
      to scientific norms for objectives field in a structured abstract.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  part_of:
    name: part_of
    description: Links a study or consortium to a parent (or umbrella) study or consortium.
      Reference by identifier; original range was class 'Study'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - FieldResearchSiteFlat
    - field_research_site_set_part_of
    - StudyFlat
    - study_set_part_of
    range: string
    multivalued: true
  principal_investigator_email:
    name: principal_investigator_email
    description: An email address for an entity such as a person. This should be the
      primary email address used. Flattened from nested slot 'principal_investigator.email'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_has_raw_value:
    name: principal_investigator_has_raw_value
    description: The full name of the Investigator in format FIRST LAST. Flattened
      from nested slot 'principal_investigator.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_name:
    name: principal_investigator_name
    description: The full name of the Investigator. It should follow the format FIRST
      [MIDDLE NAME| MIDDLE INITIAL] LAST, where MIDDLE NAME| MIDDLE INITIAL is optional.
      Flattened from nested slot 'principal_investigator.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_orcid:
    name: principal_investigator_orcid
    description: The ORCID of a person. Flattened from nested slot 'principal_investigator.orcid'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_profile_image_url:
    name: principal_investigator_profile_image_url
    description: A url that points to an image of a person. Flattened from nested
      slot 'principal_investigator.profile_image_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  principal_investigator_websites:
    name: principal_investigator_websites
    description: A list of websites that are associated with the entity. Flattened
      from nested slot 'principal_investigator.websites'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - DataGenerationFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  provenance_metadata_add_date:
    name: provenance_metadata_add_date
    description: The date and time at which a record was added to the NMDC database.
      Flattened from nested slot 'provenance_metadata.add_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_git_url:
    name: provenance_metadata_git_url
    description: The url of the software repository used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.git_url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  provenance_metadata_mod_date:
    name: provenance_metadata_mod_date
    description: The date and time at which a record was last modified in the NMDC
      database. Flattened from nested slot 'provenance_metadata.mod_date'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: datetime
    required: false
    multivalued: false
  provenance_metadata_source_system_of_record:
    name: provenance_metadata_source_system_of_record
    description: Identifies the system of origin for a record Flattened from nested
      slot 'provenance_metadata.source_system_of_record'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: SourceSystemEnum
    required: false
    multivalued: false
  provenance_metadata_submission_portal_identifier:
    name: provenance_metadata_submission_portal_identifier
    description: The UUID of the NMDC Submission Portal entry that generated this
      record. Flattened from nested slot 'provenance_metadata.submission_portal_identifier'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: true
  provenance_metadata_version:
    name: provenance_metadata_version
    description: The version tag of the software used to generate the NMDC metadata
      record Flattened from nested slot 'provenance_metadata.version'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - DataGenerationFlat
    - OrganismSampleFlat
    - StudyFlat
    range: string
    required: false
    multivalued: false
  related_identifiers:
    name: related_identifiers
    description: Unique identifier for a study submitted to additional resources.
      Similar, but not necessarily identical to that which has been submitted to NMDC
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  specific_ecosystem:
    name: specific_ecosystem
    description: Specific ecosystems represent specific features of the environment
      like aphotic zone in an ocean or gastric mucosa within a host digestive system.
      Specific ecosystem is in position 5/5 in a GOLD path.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - StudyFlat
    range: string
    multivalued: false
  study_category:
    name: study_category
    description: The type of research initiative
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: StudyCategoryEnum
    required: true
    multivalued: false
  title:
    name: title
    description: A name given to the entity that differs from the name/label programmatically
      assigned to it.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: StudyFlat
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  websites:
    name: websites
    description: A list of websites that are associated with the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: StudyFlat
    domain_of:
    - StudyFlat
    range: string
    multivalued: true