Class: StudySetProtocolLink

Flattened tabular form of 'Protocol'. Attributes are the union of base-class slots and slots from concrete subclasses of 'Protocol' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/StudySetProtocolLink

 classDiagram
    class StudySetProtocolLink
    click StudySetProtocolLink href "../StudySetProtocolLink/"
      StudySetProtocolLink : analysis_type





        StudySetProtocolLink --> "*" AnalysisTypeEnum : analysis_type
        click AnalysisTypeEnum href "../AnalysisTypeEnum/"



      StudySetProtocolLink : description

      StudySetProtocolLink : name

      StudySetProtocolLink : parent_id

      StudySetProtocolLink : protocol_for





        StudySetProtocolLink --> "0..1" ProtocolForEnum : protocol_for
        click ProtocolForEnum href "../ProtocolForEnum/"



      StudySetProtocolLink : type

      StudySetProtocolLink : url

Slots

Name	Cardinality and Range	Description	Inheritance
analysis_type	* AnalysisTypeEnum	Select all the data types associated or available for this biosample	direct
description	0..1 String	a human-readable description of a thing	direct
name	0..1 String	A human readable label for an entity	direct
protocol_for	0..1 ProtocolForEnum	The type of planned process that the protocol describes	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	direct
url	0..1 String		direct
parent_id	0..1 String	Identifier of the parent 'Study' record	direct

Identifier and Mapping Information

Annotations

property	value
table_name	study_set_protocol_link
source_class	Study

Schema Source

from schema: https://w3id.org/nmdc/nmdc-schema-flattened

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/nmdc/nmdc-schema-flattened/StudySetProtocolLink
native	https://w3id.org/nmdc/nmdc-schema-flattened/StudySetProtocolLink

LinkML Source

Direct

name: study_set_protocol_link
annotations:
  table_name:
    tag: table_name
    value: study_set_protocol_link
  source_class:
    tag: source_class
    value: Study
description: Flattened tabular form of 'Protocol'. Attributes are the union of base-class
  slots and slots from concrete subclasses of 'Protocol' that may appear via the 'type'
  field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  analysis_type:
    name: analysis_type
    description: Select all the data types associated or available for this biosample
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - OrganismSampleFlat
    - study_set_protocol_link
    range: AnalysisTypeEnum
    multivalued: true
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  protocol_for:
    name: protocol_for
    description: The type of planned process that the protocol describes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - study_set_protocol_link
    range: ProtocolForEnum
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  url:
    name: url
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - DataObjectFlat
    - study_set_protocol_link
    - study_set_study_image
    range: string
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Study' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string

Induced

name: study_set_protocol_link
annotations:
  table_name:
    tag: table_name
    value: study_set_protocol_link
  source_class:
    tag: source_class
    value: Study
description: Flattened tabular form of 'Protocol'. Attributes are the union of base-class
  slots and slots from concrete subclasses of 'Protocol' that may appear via the 'type'
  field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  analysis_type:
    name: analysis_type
    description: Select all the data types associated or available for this biosample
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: study_set_protocol_link
    domain_of:
    - BiosampleFlat
    - OrganismSampleFlat
    - study_set_protocol_link
    range: AnalysisTypeEnum
    multivalued: true
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: study_set_protocol_link
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: study_set_protocol_link
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  protocol_for:
    name: protocol_for
    description: The type of planned process that the protocol describes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: study_set_protocol_link
    domain_of:
    - study_set_protocol_link
    range: ProtocolForEnum
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: study_set_protocol_link
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  url:
    name: url
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: study_set_protocol_link
    domain_of:
    - DataObjectFlat
    - study_set_protocol_link
    - study_set_study_image
    range: string
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Study' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: study_set_protocol_link
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string