Class: WorkflowExecutionSetHasMetaboliteIdentifications

This is used to link a metabolomics analysis workflow to a specific metabolite Flattened tabular form of 'MetaboliteIdentification'. Attributes are the union of base-class slots and slots from concrete subclasses of 'MetaboliteIdentification' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionSetHasMetaboliteIdentifications

 classDiagram
    class WorkflowExecutionSetHasMetaboliteIdentifications
    click WorkflowExecutionSetHasMetaboliteIdentifications href "../WorkflowExecutionSetHasMetaboliteIdentifications/"
      WorkflowExecutionSetHasMetaboliteIdentifications : alternative_identifiers

      WorkflowExecutionSetHasMetaboliteIdentifications : highest_similarity_score

      WorkflowExecutionSetHasMetaboliteIdentifications : metabolite_identified

      WorkflowExecutionSetHasMetaboliteIdentifications : parent_id

      WorkflowExecutionSetHasMetaboliteIdentifications : type

Slots

Name	Cardinality and Range	Description	Inheritance
alternative_identifiers	* Uriorcurie	A list of alternative identifiers for the entity	direct
highest_similarity_score	0..1 Float		direct
metabolite_identified	0..1 String	the specific metabolite identifier	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	direct
parent_id	0..1 String	Identifier of the parent 'WorkflowExecution' record	direct

Identifier and Mapping Information

Annotations

property	value
table_name	workflow_execution_set_has_metabolite_identifications
source_class	WorkflowExecution

Schema Source

from schema: https://w3id.org/nmdc/nmdc-schema-flattened

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionSetHasMetaboliteIdentifications
native	https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionSetHasMetaboliteIdentifications

LinkML Source

Direct

name: workflow_execution_set_has_metabolite_identifications
annotations:
  table_name:
    tag: table_name
    value: workflow_execution_set_has_metabolite_identifications
  source_class:
    tag: source_class
    value: WorkflowExecution
description: This is used to link a metabolomics analysis workflow to a specific metabolite
  Flattened tabular form of 'MetaboliteIdentification'. Attributes are the union of
  base-class slots and slots from concrete subclasses of 'MetaboliteIdentification'
  that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  highest_similarity_score:
    name: highest_similarity_score
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_has_metabolite_identifications
    range: float
    multivalued: false
  metabolite_identified:
    name: metabolite_identified
    description: the specific metabolite identifier
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_has_metabolite_identifications
    range: string
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'WorkflowExecution' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string

Induced

name: workflow_execution_set_has_metabolite_identifications
annotations:
  table_name:
    tag: table_name
    value: workflow_execution_set_has_metabolite_identifications
  source_class:
    tag: source_class
    value: WorkflowExecution
description: This is used to link a metabolomics analysis workflow to a specific metabolite
  Flattened tabular form of 'MetaboliteIdentification'. Attributes are the union of
  base-class slots and slots from concrete subclasses of 'MetaboliteIdentification'
  that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: workflow_execution_set_has_metabolite_identifications
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  highest_similarity_score:
    name: highest_similarity_score
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_has_metabolite_identifications
    domain_of:
    - workflow_execution_set_has_metabolite_identifications
    range: float
    multivalued: false
  metabolite_identified:
    name: metabolite_identified
    description: the specific metabolite identifier
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_has_metabolite_identifications
    domain_of:
    - workflow_execution_set_has_metabolite_identifications
    range: string
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: workflow_execution_set_has_metabolite_identifications
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'WorkflowExecution' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: workflow_execution_set_has_metabolite_identifications
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string