Class: WorkflowExecutionSetMagsList

Flattened tabular form of 'MagBin'. Attributes are the union of base-class slots and slots from concrete subclasses of 'MagBin' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionSetMagsList

 classDiagram
    class WorkflowExecutionSetMagsList
    click WorkflowExecutionSetMagsList href "../WorkflowExecutionSetMagsList/"
      WorkflowExecutionSetMagsList : bin_name

      WorkflowExecutionSetMagsList : bin_quality





        WorkflowExecutionSetMagsList --> "0..1" BinQualityEnum : bin_quality
        click BinQualityEnum href "../BinQualityEnum/"



      WorkflowExecutionSetMagsList : completeness

      WorkflowExecutionSetMagsList : contamination

      WorkflowExecutionSetMagsList : eukaryotic_evaluation_completeness

      WorkflowExecutionSetMagsList : eukaryotic_evaluation_contamination

      WorkflowExecutionSetMagsList : eukaryotic_evaluation_ncbi_lineage

      WorkflowExecutionSetMagsList : eukaryotic_evaluation_ncbi_lineage_tax_ids

      WorkflowExecutionSetMagsList : gene_count

      WorkflowExecutionSetMagsList : gtdbtk_class

      WorkflowExecutionSetMagsList : gtdbtk_domain

      WorkflowExecutionSetMagsList : gtdbtk_family

      WorkflowExecutionSetMagsList : gtdbtk_genus

      WorkflowExecutionSetMagsList : gtdbtk_order

      WorkflowExecutionSetMagsList : gtdbtk_phylum

      WorkflowExecutionSetMagsList : gtdbtk_species

      WorkflowExecutionSetMagsList : members_id

      WorkflowExecutionSetMagsList : num_16s

      WorkflowExecutionSetMagsList : num_23s

      WorkflowExecutionSetMagsList : num_5s

      WorkflowExecutionSetMagsList : num_t_rna

      WorkflowExecutionSetMagsList : number_of_contig

      WorkflowExecutionSetMagsList : parent_id

      WorkflowExecutionSetMagsList : total_bases

      WorkflowExecutionSetMagsList : type

Slots

Name	Cardinality and Range	Description	Inheritance
bin_name	1 String	Name of the metagenome-assembled genome	direct
bin_quality	0..1 BinQualityEnum	The quality of the metagenome-assembled genome based on MIMAG standards (http...	direct
completeness	0..1 Float	Estimate of the completeness of the metagenome-assembled genome, estimated by...	direct
contamination	0..1 Float	Estimate of the completeness of the metagenome-assembled genome, estimated by...	direct
eukaryotic_evaluation_completeness	0..1 Float	Estimate of the completeness of the metagenome-assembled genome, estimated by...	direct
eukaryotic_evaluation_contamination	0..1 Float	Estimate of the completeness of the metagenome-assembled genome, estimated by...	direct
eukaryotic_evaluation_ncbi_lineage	0..1 String	Comma delimited ordered list of NCBI taxonomy names	direct
eukaryotic_evaluation_ncbi_lineage_tax_ids	0..1 String	Dash-delimited ordered list of NCBI taxonomy identifiers (TaxId) Flattened fr...	direct
gene_count	0..1 Integer	Number of genes	direct
gtdbtk_class	0..1 String	Taxonomic class assigned by GTDB-Tk	direct
gtdbtk_domain	0..1 String	Taxonomic domain assigned by GTDB-Tk	direct
gtdbtk_family	0..1 String	Taxonomic family assigned by GTDB-Tk	direct
gtdbtk_genus	0..1 String	Taxonomic genus assigned by GTDB-Tk	direct
gtdbtk_order	0..1 String	Taxonomic order assigned by GTDB-Tk	direct
gtdbtk_phylum	0..1 String	Taxonomic phylum assigned by GTDB-Tk	direct
gtdbtk_species	0..1 String	Taxonomic genus assigned by GTDB-Tk	direct
members_id	* String	Names of the contigs that make up a metagenome-assembled genome	direct
num_16s	0..1 Integer	Number of 16s sequences detected, a subunit of prokaryotic ribosomes	direct
num_23s	0..1 Integer	Number of 23 seqeuences detected, a subunit of ribosomes	direct
num_5s	0..1 Integer	Number of 5s seqeuences detected, a subunit of ribosomes	direct
num_t_rna	0..1 Integer	Number of transfer transfer RNAs	direct
number_of_contig	0..1 Integer	Number of contigs	direct
total_bases	0..1 Integer	Total number of basepairs	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	direct
parent_id	0..1 String	Identifier of the parent 'WorkflowExecution' record	direct

Identifier and Mapping Information

Annotations

property	value
table_name	workflow_execution_set_mags_list
source_class	WorkflowExecution

Schema Source

from schema: https://w3id.org/nmdc/nmdc-schema-flattened

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionSetMagsList
native	https://w3id.org/nmdc/nmdc-schema-flattened/WorkflowExecutionSetMagsList

LinkML Source

Direct

name: workflow_execution_set_mags_list
annotations:
  table_name:
    tag: table_name
    value: workflow_execution_set_mags_list
  source_class:
    tag: source_class
    value: WorkflowExecution
description: Flattened tabular form of 'MagBin'. Attributes are the union of base-class
  slots and slots from concrete subclasses of 'MagBin' that may appear via the 'type'
  field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  bin_name:
    name: bin_name
    description: Name of the metagenome-assembled genome.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    required: true
    multivalued: false
  bin_quality:
    name: bin_quality
    description: The quality of the metagenome-assembled genome based on MIMAG standards
      (https://doi.org/10.1038/nbt.3893).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: BinQualityEnum
    multivalued: false
  completeness:
    name: completeness
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    multivalued: false
  contamination:
    name: contamination
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    multivalued: false
  eukaryotic_evaluation_completeness:
    name: eukaryotic_evaluation_completeness
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM. Flattened from nested slot 'eukaryotic_evaluation.completeness'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    required: false
    multivalued: false
  eukaryotic_evaluation_contamination:
    name: eukaryotic_evaluation_contamination
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM. Flattened from nested slot 'eukaryotic_evaluation.contamination'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    required: false
    multivalued: false
  eukaryotic_evaluation_ncbi_lineage:
    name: eukaryotic_evaluation_ncbi_lineage
    description: Comma delimited ordered list of NCBI taxonomy names. Flattened from
      nested slot 'eukaryotic_evaluation.ncbi_lineage'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    required: false
    multivalued: false
  eukaryotic_evaluation_ncbi_lineage_tax_ids:
    name: eukaryotic_evaluation_ncbi_lineage_tax_ids
    description: Dash-delimited ordered list of NCBI taxonomy identifiers (TaxId)
      Flattened from nested slot 'eukaryotic_evaluation.ncbi_lineage_tax_ids'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    required: false
    multivalued: false
  gene_count:
    name: gene_count
    description: Number of genes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  gtdbtk_class:
    name: gtdbtk_class
    description: Taxonomic class assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_domain:
    name: gtdbtk_domain
    description: Taxonomic domain assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_family:
    name: gtdbtk_family
    description: Taxonomic family assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_genus:
    name: gtdbtk_genus
    description: Taxonomic genus assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_order:
    name: gtdbtk_order
    description: Taxonomic order assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_phylum:
    name: gtdbtk_phylum
    description: Taxonomic phylum assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_species:
    name: gtdbtk_species
    description: Taxonomic genus assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  members_id:
    name: members_id
    description: Names of the contigs that make up a metagenome-assembled genome.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: true
  num_16s:
    name: num_16s
    description: Number of 16s sequences detected, a subunit of prokaryotic ribosomes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  num_23s:
    name: num_23s
    description: Number of 23 seqeuences detected, a subunit of ribosomes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  num_5s:
    name: num_5s
    description: Number of 5s seqeuences detected, a subunit of ribosomes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  num_t_rna:
    name: num_t_rna
    description: Number of transfer transfer RNAs.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  number_of_contig:
    name: number_of_contig
    description: Number of contigs
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  total_bases:
    name: total_bases
    description: Total number of basepairs.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'WorkflowExecution' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_associated_studies
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - data_generation_set_associated_studies
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string

Induced

name: workflow_execution_set_mags_list
annotations:
  table_name:
    tag: table_name
    value: workflow_execution_set_mags_list
  source_class:
    tag: source_class
    value: WorkflowExecution
description: Flattened tabular form of 'MagBin'. Attributes are the union of base-class
  slots and slots from concrete subclasses of 'MagBin' that may appear via the 'type'
  field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  bin_name:
    name: bin_name
    description: Name of the metagenome-assembled genome.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    required: true
    multivalued: false
  bin_quality:
    name: bin_quality
    description: The quality of the metagenome-assembled genome based on MIMAG standards
      (https://doi.org/10.1038/nbt.3893).
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: BinQualityEnum
    multivalued: false
  completeness:
    name: completeness
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    multivalued: false
  contamination:
    name: contamination
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    multivalued: false
  eukaryotic_evaluation_completeness:
    name: eukaryotic_evaluation_completeness
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM. Flattened from nested slot 'eukaryotic_evaluation.completeness'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    required: false
    multivalued: false
  eukaryotic_evaluation_contamination:
    name: eukaryotic_evaluation_contamination
    description: Estimate of the completeness of the metagenome-assembled genome,
      estimated by a tool like CheckM. Flattened from nested slot 'eukaryotic_evaluation.contamination'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: float
    required: false
    multivalued: false
  eukaryotic_evaluation_ncbi_lineage:
    name: eukaryotic_evaluation_ncbi_lineage
    description: Comma delimited ordered list of NCBI taxonomy names. Flattened from
      nested slot 'eukaryotic_evaluation.ncbi_lineage'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    required: false
    multivalued: false
  eukaryotic_evaluation_ncbi_lineage_tax_ids:
    name: eukaryotic_evaluation_ncbi_lineage_tax_ids
    description: Dash-delimited ordered list of NCBI taxonomy identifiers (TaxId)
      Flattened from nested slot 'eukaryotic_evaluation.ncbi_lineage_tax_ids'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    required: false
    multivalued: false
  gene_count:
    name: gene_count
    description: Number of genes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  gtdbtk_class:
    name: gtdbtk_class
    description: Taxonomic class assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_domain:
    name: gtdbtk_domain
    description: Taxonomic domain assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_family:
    name: gtdbtk_family
    description: Taxonomic family assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_genus:
    name: gtdbtk_genus
    description: Taxonomic genus assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_order:
    name: gtdbtk_order
    description: Taxonomic order assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_phylum:
    name: gtdbtk_phylum
    description: Taxonomic phylum assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  gtdbtk_species:
    name: gtdbtk_species
    description: Taxonomic genus assigned by GTDB-Tk.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: false
  members_id:
    name: members_id
    description: Names of the contigs that make up a metagenome-assembled genome.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: string
    multivalued: true
  num_16s:
    name: num_16s
    description: Number of 16s sequences detected, a subunit of prokaryotic ribosomes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  num_23s:
    name: num_23s
    description: Number of 23 seqeuences detected, a subunit of ribosomes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  num_5s:
    name: num_5s
    description: Number of 5s seqeuences detected, a subunit of ribosomes.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  num_t_rna:
    name: num_t_rna
    description: Number of transfer transfer RNAs.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  number_of_contig:
    name: number_of_contig
    description: Number of contigs
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  total_bases:
    name: total_bases
    description: Total number of basepairs.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: workflow_execution_set_mags_list
    domain_of:
    - workflow_execution_set_mags_list
    range: integer
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: workflow_execution_set_mags_list
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'WorkflowExecution' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: workflow_execution_set_mags_list
    domain_of:
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_associated_studies
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - data_generation_set_associated_studies
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string