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Enum: ChemicalEntityEnum

URI: ChemicalEntityEnum

Permissible Values

Value Meaning Description
acetonitrile CHEBI:38472
alphaLP EC:3.4.21.12
ammonium_acetate CHEBI:62947
ammonium_bicarbonate CHEBI:184335
Arg-C MS:1001303
Asp-N MS:1001304
chloroform CHEBI:35255
chymotrypsin MS:1001306
formic_acid CHEBI:30751
glucose CHEBI:17234
Glu-C MS:1001917
isopropyl_alcohol CHEBI:17824
Lys-C MS:1001309
Lys-N MS:1003093
methanol CHEBI:17790
trypsin MS:1001251
water CHEBI:15377

Slots

Name Description
known_as The substance from which a portion was taken

Identifier and Mapping Information

Schema Source

LinkML Source

name: ChemicalEntityEnum
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
permissible_values:
  acetonitrile:
    text: acetonitrile
    meaning: CHEBI:38472
  alphaLP:
    text: alphaLP
    meaning: EC:3.4.21.12
    comments:
    - A serine protease that hydrolyzes peptide bonds at the C-terminus of threonine,
      alanine, serine, and valine.
    see_also:
    - https://commonchemistry.cas.org/detail?cas_rn=37288-76-9&title=
  ammonium_acetate:
    text: ammonium_acetate
    meaning: CHEBI:62947
  ammonium_bicarbonate:
    text: ammonium_bicarbonate
    meaning: CHEBI:184335
  Arg-C:
    text: Arg-C
    meaning: MS:1001303
    comments:
    - A cysteine protease that hydrolyzes peptide, ester, and amide bonds at the C-terminus
      of arginine and with  lower efficiency, lysine.
  Asp-N:
    text: Asp-N
    meaning: MS:1001304
    comments:
    - A zinc metalloendopeptidase that hydrolyzes peptide bonds at the N-terminus
      of aspartic acid.
  chloroform:
    text: chloroform
    meaning: CHEBI:35255
  chymotrypsin:
    text: chymotrypsin
    meaning: MS:1001306
    comments:
    - A serine protease that hydrolyzes peptide bonds at the C-terminus of tryptophan,
      leucine, tyrosine,  and phenylalanine.
  formic_acid:
    text: formic_acid
    meaning: CHEBI:30751
    comments:
    - A carboxylic acid that is the simplest aliphatic carboxylic acid, comprising
      a hydrogen atom  joined to the methyl group of methanol.
  glucose:
    text: glucose
    meaning: CHEBI:17234
    comments:
    - Generally considered the most abundant monosaccharide in nature.
  Glu-C:
    text: Glu-C
    meaning: MS:1001917
    comments:
    - A serine protease that hydrolyzes peptide and ester bonds at the C-terminus
      of aspartic acid or glutamic acid.
  isopropyl_alcohol:
    text: isopropyl_alcohol
    meaning: CHEBI:17824
  Lys-C:
    text: Lys-C
    meaning: MS:1001309
    comments:
    - A serine protease that hydrolyzes peptide, ester, and amide bonds at the C-terminus
      of lysine.
  Lys-N:
    text: Lys-N
    meaning: MS:1003093
    comments:
    - A metalloendopeptidase that hydrolyzes peptide bonds at the C-terminus of lysine.
  methanol:
    text: methanol
    meaning: CHEBI:17790
  trypsin:
    text: trypsin
    meaning: MS:1001251
    comments:
    - A serine protease that hydrolyzes peptide bonds at the C-terminus of arginine
      and lysine.
  water:
    text: water
    meaning: CHEBI:15377
    comments:
    - Any form of water used in an experiment including deionized water, distilled
      water, and ultrapure water. Protocol or materials and methods should be consulted
      for exact type of water used in an experiment.