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NMDC Schema

Schema for National Microbiome Data Collaborative (NMDC). This schema is organized into distinct modules:

  • a set of core types for representing data values
  • the mixs schema (auto-translated from mixs excel)
  • annotation schema
  • the NMDC schema itself

URI: https://microbiomedata/schema Name: NMDC

Classes

Class Description
Activity a provence-generating activity
Agent a provence-generating agent
AnalyticalSample
AttributeValue The value for any value of a attribute for a sample
Biosample Biological source material which can be characterized by an experiment
BiosampleProcessing A process that takes one or more biosamples as inputs and generates one or as...
BooleanValue A value that is a boolean
ChemicalEntity An atom or molecule that can be represented with a chemical formula
CollectingBiosamplesFromSite
ControlledIdentifiedTermValue A controlled term or class from an ontology, requiring the presence of term w...
ControlledTermValue A controlled term or class from an ontology
CreditAssociation This class supports binding associated researchers to studies
Database An abstract holder for any set of metadata and data
DataObject An object that primarily consists of symbols that represent information
DissolvingActivity
EnvironmentalMaterialTerm
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected
FunctionalAnnotation An assignment of a function term (e
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func...
GeneProduct A molecule encoded by a gene that has an evolved function
GenomeFeature A feature localized to an interval along a genome
GeolocationValue A normalized value for a location on the earth's surface
ImageValue An attribute value representing an image
Instrument A material entity that is designed to perform a function in a scientific inve...
IntegerValue A value that is an integer
LabDevice
MagBin
MagsAnalysisActivity A workflow execution activity that uses computational binning tools to group ...
MaterialContainer
MaterialEntity
MaterialSample
MaterialSamplingActivity
MetaboliteQuantification This is used to link a metabolomics analysis workflow to a specific metabolit...
MetabolomicsAnalysisActivity
MetagenomeAnnotationActivity A workflow execution activity that provides functional and structural annotat...
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble...
MetagenomeSequencingActivity Initial sequencing activity that precedes any analysis
MetaproteomicsAnalysisActivity
MetatranscriptomeActivity A metatranscriptome activity that e
MetatranscriptomeAnnotationActivity
MetatranscriptomeAssembly
NamedThing a databased entity or concept/class
NomAnalysisActivity
OmicsProcessing The methods and processes used to generate omics data from a biosample or org...
OntologyClass
OrthologyGroup A set of genes or gene products in which all members are orthologous
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm...
PeptideQuantification This is used to link a metaproteomics analysis workflow to a specific peptide...
Person represents a person, such as a researcher
PersonValue An attribute value representing a person
PlannedProcess
ProteinQuantification This is used to link a metaproteomics analysis workflow to a specific protein
QuantityValue A simple quantity, e
Reaction An individual biochemical transformation carried out by a functional unit of ...
ReactionActivity
ReactionParticipant Instances of this link a reaction to a chemical entity participant
ReadBasedTaxonomyAnalysisActivity A workflow execution activity that performs taxonomy classification using seq...
ReadQcAnalysisActivity A workflow execution activity that performs quality control on raw Illumina r...
Site
Study A study summarizes the overall goal of a research initiative and outlines the...
TextValue A basic string value
TimestampValue A value that is a timestamp
UrlValue A value that is a string that conforms to URL syntax
WorkflowExecutionActivity Represents an instance of an execution of a particular workflow

Slots

Slot Description
abs_air_humidity Actual mass of water vapor - mh20 - present in the air water vapor mixture
abstract The abstract of manuscript/grant associated with the entity; i
acted_on_behalf_of
activity_set This property links a database object to the set of workflow activities
activity_speed
activity_temperature
activity_time
add_date The date on which the information was added to the database
add_recov_method Additional (i
additional_info Information that doesn't fit anywhere else
address The street name and building number where the sampling occurred
adj_room List of rooms (room number, room name) immediately adjacent to the sampling r...
aero_struc Aerospace structures typically consist of thin plates with stiffeners for the...
agrochem_addition Addition of fertilizers, pesticides, etc
air_PM_concen Concentration of substances that remain suspended in the air, and comprise mi...
air_temp Temperature of the air at the time of sampling
air_temp_regm Information about treatment involving an exposure to varying temperatures; sh...
al_sat Aluminum saturation (esp
al_sat_meth Reference or method used in determining Al saturation
alkalinity Alkalinity, the ability of a solution to neutralize acids to the equivalence ...
alkalinity_method Method used for alkalinity measurement
alkyl_diethers Concentration of alkyl diethers
all_proteins
alt Altitude is a term used to identify heights of objects such as airplanes, spa...
alternate_emails One or more other email addresses for an entity
alternative_descriptions A list of alternative descriptions for the entity
alternative_identifiers A list of alternative identifiers for the entity
alternative_names A list of alternative names used to refer to the entity
alternative_titles A list of alternative titles for the entity
aminopept_act Measurement of aminopeptidase activity
ammonium Concentration of ammonium in the sample
ammonium_nitrogen Concentration of ammonium nitrogen in the sample
amount_collected
amount_light The unit of illuminance and luminous emittance, measuring luminous flux per u...
analysis_identifiers
analysis_type Select all the data types associated or available for this biosample
ances_data Information about either pedigree or other ancestral information description ...
annual_precpt The average of all annual precipitation values known, or an estimated equival...
annual_temp Mean annual temperature
antibiotic_regm Information about treatment involving antibiotic administration; should inclu...
api API gravity is a measure of how heavy or light a petroleum liquid is compared...
applied_role
applied_roles
applies_to_person
arch_struc An architectural structure is a human-made, free-standing, immobile outdoor c...
aromatics_pc Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...
asm_score A score for comparing metagenomic assembly quality from same sample
asphaltenes_pc Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...
assembly_identifiers
atmospheric_data Measurement of atmospheric data; can include multiple data
attribute A attribute of a biosample
avg_dew_point The average of dew point measures taken at the beginning of every hour over a...
avg_occup Daily average occupancy of room
avg_temp The average of temperatures taken at the beginning of every hour over a 24 ho...
bac_prod Bacterial production in the water column measured by isotope uptake
bac_resp Measurement of bacterial respiration in the water column
bacteria_carb_prod Measurement of bacterial carbon production
barometric_press Force per unit area exerted against a surface by the weight of air above that...
basin Name of the basin (e
bathroom_count The number of bathrooms in the building
bedroom_count The number of bedrooms in the building
benzene Concentration of benzene in the sample
best_protein
bin_name
bin_quality
binned_contig_num
biochem_oxygen_dem Amount of dissolved oxygen needed by aerobic biological organisms in a body o...
biocide List of biocides (commercial name of product and supplier) and date of admini...
biocide_admin_method Method of biocide administration (dose, frequency, duration, time elapsed bet...
biogas_retention_time
biogas_temperature
biol_stat The level of genome modification
biomass Amount of biomass; should include the name for the part of biomass measured, ...
biosample_categories
biosample_identifiers
biosample_input
biosample_set This property links a database object to the set of samples within it
biotic_regm Information about treatment(s) involving use of biotic factors, such as bacte...
biotic_relationship Description of relationship(s) between the subject organism and other organis...
bishomohopanol Concentration of bishomohopanol
blood_press_diast Resting diastolic blood pressure, measured as mm mercury
blood_press_syst Resting systolic blood pressure, measured as mm mercury
bromide Concentration of bromide
build_docs The building design, construction and operation documents
build_occup_type The primary function for which a building or discrete part of a building is i...
building_setting A location (geography) where a building is set
built_struc_age The age of the built structure since construction
built_struc_set The characterization of the location of the built structure as high or low hu...
built_struc_type A physical structure that is a body or assemblage of bodies in space to form ...
calcium Concentration of calcium in the sample
canary a slot that can be added and removed as evidence that schema changes have pro...
carb_dioxide Carbon dioxide (gas) amount or concentration at the time of sampling
carb_monoxide Carbon monoxide (gas) amount or concentration at the time of sampling
carb_nitro_ratio Ratio of amount or concentrations of carbon to nitrogen
ceil_area The area of the ceiling space within the room
ceil_cond The physical condition of the ceiling at the time of sampling; photos or vide...
ceil_finish_mat The type of material used to finish a ceiling
ceil_struc The construction format of the ceiling
ceil_texture The feel, appearance, or consistency of a ceiling surface
ceil_thermal_mass The ability of the ceiling to provide inertia against temperature fluctuation...
ceil_type The type of ceiling according to the ceiling's appearance or construction
ceil_water_mold Signs of the presence of mold or mildew on the ceiling
chem_administration List of chemical compounds administered to the host or site where sampling oc...
chem_mutagen Treatment involving use of mutagens; should include the name of mutagen, amou...
chem_oxygen_dem A measure of the capacity of water to consume oxygen during the decomposition...
chem_treat_method Method of chemical administration(dose, frequency, duration, time elapsed bet...
chem_treatment List of chemical compounds administered upstream the sampling location where ...
chemical from reaction participant class
chemical_formula
chimera_check Tool(s) used for chimera checking, including version number and parameters, t...
chloride Concentration of chloride in the sample
chlorophyll Concentration of chlorophyll
climate_environment Treatment involving an exposure to a particular climate; treatment regimen in...
collected_from The Site from which a Biosample was collected
collected_into
collecting_biosamples_from_site_set
collection_date The time of sampling, either as an instance (single point in time) or interva...
collection_date_inc Date the incubation was harvested/collected/ended
collection_time The time of sampling, either as an instance (single point) or interval
collection_time_inc Time the incubation was harvested/collected/ended
community
completeness
completion_date
compression_type If provided, specifies the compression type
conduc Electrical conductivity of water
container_size
container_type
contamination
contig_bp Total size in bp of all contigs
contigs The sum of the (length*log(length)) of all contigs, times some constant
cool_syst_id The cooling system identifier
core_field basic fields
crop_rotation Whether or not crop is rotated, and if yes, rotation schedule
ctg_l50 Given a set of contigs, the L50 is defined as the sequence length of the shor...
ctg_l90 The L90 statistic is less than or equal to the L50 statistic; it is the lengt...
ctg_logsum Maximum contig length
ctg_max Maximum contig length
ctg_n50 Given a set of contigs, each with its own length, the N50 count is defined as...
ctg_n90 Given a set of contigs, each with its own length, the N90 count is defined as...
ctg_powsum Powersum of all contigs is the same as logsum except that it uses the sum of ...
cult_root_med Name or reference for the hydroponic or in vitro culture rooting medium; can ...
cur_land_use Present state of sample site
cur_vegetation Vegetation classification from one or more standard classification systems, o...
cur_vegetation_meth Reference or method used in vegetation classification
data_object_set This property links a database object to the set of data objects within it
data_object_type The type of file represented by the data object
date_created from database class
date_last_rain The date of the last time it rained
density Density of the sample, which is its mass per unit volume (aka volumetric mass...
depos_env Main depositional environment (https://en
depth The vertical distance below local surface, e
description a human-readable description of a thing
device_type
dew_point The temperature to which a given parcel of humid air must be cooled, at const...
diether_lipids Concentration of diether lipids; can include multiple types of diether lipids
direction
display_order When rendering information, this attribute to specify the order in which the ...
diss_carb_dioxide Concentration of dissolved carbon dioxide in the sample or liquid portion of ...
diss_hydrogen Concentration of dissolved hydrogen
diss_inorg_carb Dissolved inorganic carbon concentration in the sample, typically measured af...
diss_inorg_nitro Concentration of dissolved inorganic nitrogen
diss_inorg_phosp Concentration of dissolved inorganic phosphorus in the sample
diss_iron Concentration of dissolved iron in the sample
diss_org_carb Concentration of dissolved organic carbon in the sample, liquid portion of th...
diss_org_nitro Dissolved organic nitrogen concentration measured as; total dissolved nitroge...
diss_oxygen Concentration of dissolved oxygen
diss_oxygen_fluid Concentration of dissolved oxygen in the oil field produced fluids as it cont...
dissolution_aided_by
dissolution_reagent
dissolution_volume
dissolved_in
dissolving_activity_set
dna_absorb1 260/280 measurement of DNA sample purity
dna_absorb2 260/230 measurement of DNA sample purity
dna_collect_site Provide information on the site your DNA sample was collected from
dna_concentration
dna_cont_type Tube or plate (96-well)
dna_cont_well
dna_container_id
dna_dnase
dna_isolate_meth Describe the method/protocol/kit used to extract DNA/RNA
dna_organisms List any organisms known or suspected to grow in co-culture, as well as estim...
dna_project_contact
dna_samp_id
dna_sample_format Solution in which the DNA sample has been suspended
dna_sample_name Give the DNA sample a name that is meaningful to you
dna_seq_project
dna_seq_project_name
dna_seq_project_pi
dna_volume
dnase_rna
doi
door_comp_type The composite type of the door
door_cond The phsical condition of the door
door_direct The direction the door opens
door_loc The relative location of the door in the room
door_mat The material the door is composed of
door_move The type of movement of the door
door_size The size of the door
door_type The type of door material
door_type_metal The type of metal door
door_type_wood The type of wood door
door_water_mold Signs of the presence of mold or mildew on a door
down_par Visible waveband radiance and irradiance measurements in the water column
drainage_class Drainage classification from a standard system such as the USDA system
drawings The buildings architectural drawings; if design is chosen, indicate phase-con...
ecosystem An ecosystem is a combination of a physical environment (abiotic factors) and...
ecosystem_category Ecosystem categories represent divisions within the ecosystem based on specif...
ecosystem_path_id A unique id representing the GOLD classifers associated with a sample
ecosystem_subtype Ecosystem subtypes represent further subdivision of Ecosystem types into more...
ecosystem_type Ecosystem types represent things having common characteristics within the Eco...
efficiency_percent Percentage of volatile solids removed from the anaerobic digestor
elev Elevation of the sampling site is its height above a fixed reference point, m...
elevator The number of elevators within the built structure
email An email address for an entity such as a person
embargoed If true, the data are embargoed and not available for public access
emsl_biosample_identifiers A list of identifiers for the biosample from the EMSL database
emsl_project_identifier
emsl_proposal_doi The proposal DOI assigned to the awarded EMSL study
emsl_proposal_identifier The proposal number assigned to the EMSL awarded study that relates to that w...
emsl_store_temp The temperature at which the sample should be stored upon delivery to EMSL
emulsions Amount or concentration of substances such as paints, adhesives, mayonnaise, ...
encodes
end
ended_at_time
env_broad_scale Report the major environmental system the sample or specimen came from
env_local_scale Report the entity or entities which are in the sample or specimen’s local vic...
env_medium Report the environmental material(s) immediately surrounding the sample or sp...
env_package MIxS extension for reporting of measurements and observations obtained from o...
environment_field field describing environmental aspect of a sample
escalator The number of escalators within the built structure
ess_dive_datasets List of ESS-DIVE dataset DOIs
ethylbenzene Concentration of ethylbenzene in the sample
etl_software_version from database class
execution_resource Example: NERSC-Cori
exp_duct The amount of exposed ductwork in the room
exp_pipe The number of exposed pipes in the room
experimental_factor Experimental factors are essentially the variable aspects of an experiment de...
experimental_factor_other Other details about your sample that you feel can't be accurately represented...
ext_door The number of exterior doors in the built structure
ext_wall_orient The orientation of the exterior wall
ext_window_orient The compass direction the exterior window of the room is facing
external_database_identifiers Link to corresponding identifier in external database
extreme_event Unusual physical events that may have affected microbial populations
fao_class Soil classification from the FAO World Reference Database for Soil Resources
feature_type
fertilizer_regm Information about treatment involving the use of fertilizers; should include ...
field Name of the hydrocarbon field (e
field_research_site_set
file_size_bytes Size of the file in bytes
filter_method Type of filter used or how the sample was filtered
filter_type A device which removes solid particulates or airborne molecular contaminants
fire Historical and/or physical evidence of fire
fireplace_type A firebox with chimney
flooding Historical and/or physical evidence of flooding
floor_age The time period since installment of the carpet or flooring
floor_area The area of the floor space within the room
floor_cond The physical condition of the floor at the time of sampling; photos or video ...
floor_count The number of floors in the building, including basements and mechanical pent...
floor_finish_mat The floor covering type; the finished surface that is walked on
floor_struc Refers to the structural elements and subfloor upon which the finish flooring...
floor_thermal_mass The ability of the floor to provide inertia against temperature fluctuations
floor_water_mold Signs of the presence of mold or mildew in a room
fluor Raw or converted fluorescence of water
freq_clean The number of times the sample location is cleaned
freq_cook The number of times a meal is cooked per week
functional_annotation_set This property links a database object to the set of all functional annotation...
funding_sources
fungicide_regm Information about treatment involving use of fungicides; should include the n...
furniture The types of furniture present in the sampled room
gap_pct The gap size percentage of all scaffolds
gaseous_environment Use of conditions with differing gaseous environments; should include the nam...
gaseous_substances Amount or concentration of substances such as hydrogen sulfide, carbon dioxid...
gc_avg Average of GC content of all contigs
gc_std Standard deviation of GC content of all contigs
gender_restroom The gender type of the restroom
gene_count
genetic_mod Genetic modifications of the genome of an organism, which may occur naturally...
genome_feature_set This property links a database object to the set of all features
geo_loc_name The geographical origin of the sample as defined by the country or sea name f...
gff_coordinate A positive 1-based integer coordinate indicating start or end
git_url Example: https://github
glucosidase_act Measurement of glucosidase activity
gold_analysis_project_identifiers identifiers for corresponding analysis project in GOLD
gold_biosample_identifiers identifiers for corresponding sample in GOLD
gold_identifiers
gold_path_field This is a grouping for any of the gold path fields
gold_sequencing_project_identifiers identifiers for corresponding sequencing project in GOLD
gold_study_identifiers identifiers for corresponding project(s) in GOLD
gravidity Whether or not subject is gravid, and if yes date due or date post-conception...
gravity Information about treatment involving use of gravity factor to study various ...
growth_facil Type of facility where the sampled plant was grown; controlled vocabulary: gr...
growth_habit Characteristic shape, appearance or growth form of a plant species
growth_hormone_regm Information about treatment involving use of growth hormones; should include ...
gtdbtk_class
gtdbtk_domain
gtdbtk_family
gtdbtk_genus
gtdbtk_order
gtdbtk_phylum
gtdbtk_species
habitat
hall_count The total count of hallways and cooridors in the built structure
handidness The handidness of the individual sampled
has_numeric_value
has_raw_value
has_unit Example "m"
has_boolean_value Links a quantity value to a boolean
has_calibration
has_credit_associations This slot links a study to a credit association
has_function
has_input An input to a process
has_inputs
has_maximum_numeric_value The maximum value part, expressed as number, of the quantity value when the v...
has_metabolite_quantifications
has_minimum_numeric_value The minimum value part, expressed as number, of the quantity value when the v...
has_numeric_value Links a quantity value to a number
has_output An output biosample to a processing step
has_outputs
has_part
has_participants
has_peptide_quantifications
has_raw_value The value that was specified for an annotation in raw form, i
has_unit Links a QuantityValue to a unit
hc_produced Main hydrocarbon type produced from resource (i
hcr Main Hydrocarbon Resource type
hcr_fw_salinity Original formation water salinity (prior to secondary recovery e
hcr_geol_age Geological age of hydrocarbon resource (Additional info: https://en
hcr_pressure Original pressure of the hydrocarbon resource
hcr_temp Original temperature of the hydrocarbon resource
heat_cool_type Methods of conditioning or heating a room or building
heat_deliv_loc The location of heat delivery within the room
heat_sys_deliv_meth The method by which the heat is delivered through the system
heat_system_id The heating system identifier
heavy_metals Heavy metals present in the sequenced sample and their concentrations
heavy_metals_meth Reference or method used in determining heavy metals
height_carper_fiber The average carpet fiber height in the indoor environment
herbicide_regm Information about treatment involving use of herbicides; information about tr...
highest_similarity_score
horizon_meth Reference or method used in determining the horizon
host_age Age of host at the time of sampling; relevant scale depends on species and st...
host_body_habitat Original body habitat where the sample was obtained from
host_body_product Substance produced by the body, e
host_body_site Name of body site where the sample was obtained from, such as a specific orga...
host_body_temp Core body temperature of the host when sample was collected
host_color The color of host
host_common_name Common name of the host
host_diet Type of diet depending on the host, for animals omnivore, herbivore etc
host_dry_mass Measurement of dry mass
host_family_relation Familial relationships to other hosts in the same study; can include multiple...
host_genotype Observed genotype
host_growth_cond Literature reference giving growth conditions of the host
host_height The height of subject
host_last_meal Content of last meal and time since feeding; can include multiple values
host_length The length of subject
host_life_stage Description of life stage of host
host_name
host_phenotype Phenotype of human or other host
host_sex Gender or physical sex of the host
host_shape Morphological shape of host
host_subject_id A unique identifier by which each subject can be referred to, de-identified
host_subspecf_genlin Information about the genetic distinctness of the host organism below the sub...
host_substrate The growth substrate of the host
host_symbiont The taxonomic name of the organism(s) found living in mutualistic, commensali...
host_taxid NCBI taxon id of the host, e
host_tot_mass Total mass of the host at collection, the unit depends on host
host_wet_mass Measurement of wet mass
humidity Amount of water vapour in the air, at the time of sampling
humidity_regm Information about treatment involving an exposure to varying degree of humidi...
id A unique identifier for a thing
igsn_biosample_identifiers A list of identifiers for the biosample from the IGSN database
img_identifiers A list of identifiers that relate the biosample to records in the IMG databas...
inchi
inchi_key
indoor_space A distinguishable space within a structure, the purpose for which discrete ar...
indoor_surf Type of indoor surface
indust_eff_percent Percentage of industrial effluents received by wastewater treatment plant
inorg_particles Concentration of particles such as sand, grit, metal particles, ceramics, etc
input_base_count The nucleotide base count number of input reads for QC analysis
input_contig_num
input_read_bases
input_read_count The sequence count number of input reads for QC analysis
insdc_analysis_identifiers
insdc_assembly_identifiers
insdc_bioproject_identifiers identifiers for corresponding project in INSDC Bioproject
insdc_biosample_identifiers identifiers for corresponding sample in INSDC
insdc_experiment_identifiers
insdc_identifiers Any identifier covered by the International Nucleotide Sequence Database Coll...
insdc_secondary_sample_identifiers secondary identifiers for corresponding sample in INSDC
insdc_sra_ena_study_identifiers identifiers for corresponding project in INSDC SRA / ENA
inside_lux The recorded value at sampling time (power density)
instrument_name The name of the instrument that was used for processing the sample
int_wall_cond The physical condition of the wall at the time of sampling; photos or video p...
investigation_field field describing aspect of the investigation/study to which the sample belong...
is_balanced
is_diastereoselective
is_fully_characterized
is_stereo
is_transport
isotope_exposure List isotope exposure or addition applied to your sample
iw_bt_date_well Injection water breakthrough date per well following a secondary and/or terti...
iwf Proportion of the produced fluids derived from injected water at the time of ...
keywords A list of keywords that used to associate the entity
language Should use ISO 639-1 code e
last_clean The last time the floor was cleaned (swept, mopped, vacuumed)
lat_lon The geographical origin of the sample as defined by latitude and longitude
latitude latitude
lbc_thirty lime buffer capacity, determined after 30 minute incubation
lbceq lime buffer capacity, determined at equilibrium after 5 day incubation
left_participants
light_intensity Measurement of light intensity
light_regm Information about treatment(s) involving exposure to light, including both li...
light_type Application of light to achieve some practical or aesthetic effect
link_addit_analys Link to additional analysis results performed on the sample
link_class_info Link to digitized soil maps or other soil classification information
link_climate_info Link to climate resource
lithology Hydrocarbon resource main lithology (Additional information: http://petrowiki
local_class Soil classification based on local soil classification system
local_class_meth Reference or method used in determining the local soil classification
location
longitude longitude
low_depth_contig_num
magnesium Concentration of magnesium in the sample
mags_activity_set This property links a database object to the set of MAGs analysis activities
mags_list
manganese Concentration of manganese in the sample
massive_identifiers identifiers for entities according to MASSIVE
massive_study_identifiers identifiers for corresponding study in MASSIVE
material_input
material_output
material_sample_set
material_sampling_activity_set
max_occup The maximum amount of people allowed in the indoor environment
md5_checksum MD5 checksum of file (pre-compressed)
mean_frict_vel Measurement of mean friction velocity
mean_peak_frict_vel Measurement of mean peak friction velocity
mech_struc mechanical structure: a moving structure
mechanical_damage Information about any mechanical damage exerted on the plant; can include mul...
members_id
metabolite_quantified
metabolomics_analysis_activity_set This property links a database object to the set of metabolomics analysis act...
metagenome_annotation_activity_set This property links a database object to the set of metagenome annotation act...
metagenome_assembly_parameter
metagenome_assembly_set This property links a database object to the set of metagenome assembly activ...
metagenome_sequencing_activity_set This property links a database object to the set of metagenome sequencing act...
metaproteomics_analysis_activity_set This property links a database object to the set of metaproteomics analysis a...
metatranscriptome_activity_set This property links a database object to the set of metatranscriptome analysi...
methane Methane (gas) amount or concentration at the time of sampling
mgnify_analysis_identifiers
mgnify_identifiers
mgnify_project_identifiers identifiers for corresponding project in MGnify
micro_biomass_c_meth Reference or method used in determining microbial biomass carbon
micro_biomass_meth Reference or method used in determining microbial biomass
micro_biomass_n_meth Reference or method used in determining microbial biomass nitrogen
microbial_biomass The part of the organic matter in the soil that constitutes living microorgan...
microbial_biomass_c The part of the organic matter in the soil that constitutes living microorgan...
microbial_biomass_n The part of the organic matter in the soil that constitutes living microorgan...
min_q_value
mineral_nutr_regm Information about treatment involving the use of mineral supplements; should ...
misc_param Any other measurement performed or parameter collected, that is not listed he...
mod_date The last date on which the database information was modified
n_alkanes Concentration of n-alkanes; can include multiple n-alkanes
name A human readable label for an entity
ncbi_project_name
ncbi_taxonomy_name
nitrate Concentration of nitrate in the sample
nitrate_nitrogen Concentration of nitrate nitrogen in the sample
nitrite Concentration of nitrite in the sample
nitrite_nitrogen Concentration of nitrite nitrogen in the sample
nitro Concentration of nitrogen (total)
nom_analysis_activity_set This property links a database object to the set of natural organic matter (N...
non_microb_biomass Amount of biomass; should include the name for the part of biomass measured, ...
non_microb_biomass_method Reference or method used in determining biomass
non_min_nutr_regm Information about treatment involving the exposure of plant to non-mineral nu...
notes from study class
nucl_acid_amp A link to a literature reference, electronic resource or a standard operating...
nucl_acid_ext A link to a literature reference, electronic resource or a standard operating...
nucleic_acid_sequence_source_field
num_16s
num_23s
num_5s
num_aligned_reads The sequence count number of input reads aligned to assembled contigs
num_input_reads The sequence count number of input reads for assembly
num_t_rna
number_of_contig
number_pets The number of pets residing in the sampled space
number_plants The number of plant(s) in the sampling space
number_resident The number of individuals currently occupying in the sampling location
object_set Applies to a property that links a database object to a set of objects
objective The scientific objectives associated with the entity
occup_density_samp Average number of occupants at time of sampling per square footage
occup_document The type of documentation of occupancy
occup_samp Number of occupants present at time of sample within the given space
omics_processing_identifiers
omics_processing_set This property links a database object to the set of omics processings within ...
omics_type The type of omics data
orcid The ORCID of a person
org_carb Concentration of organic carbon
org_count_qpcr_info If qpcr was used for the cell count, the target gene name, the primer sequenc...
org_matter Concentration of organic matter
org_nitro Concentration of organic nitrogen
org_nitro_method Method used for obtaining organic nitrogen
org_particles Concentration of particles such as faeces, hairs, food, vomit, paper fibers, ...
organism_count Total cell count of any organism (or group of organisms) per gram, volume or ...
other_treatment Other treatments applied to your samples that are not applicable to the provi...
output_base_count After QC analysis nucleotide base count number
output_read_bases
output_read_count After QC analysis sequence count number
owc_tvdss Depth of the original oil water contact (OWC) zone (average) (m TVDSS)
oxy_stat_samp Oxygenation status of sample
oxygen Oxygen (gas) amount or concentration at the time of sampling
part_of Links a resource to another resource that either logically or physically incl...
part_org_carb Concentration of particulate organic carbon
part_org_nitro Concentration of particulate organic nitrogen
participating_agent
particle_class Particles are classified, based on their size, into six general categories:cl...
pcr_cond Description of reaction conditions and components of PCR in the form of 'init...
pcr_primers PCR primers that were used to amplify the sequence of the targeted gene, locu...
peptide_sequence
peptide_sequence_count
peptide_spectral_count
peptide_sum_masic_abundance
permeability Measure of the ability of a hydrocarbon resource to allow fluids to pass thro...
perturbation Type of perturbation, e
pesticide_regm Information about treatment involving use of insecticides; should include the...
petroleum_hydrocarb Concentration of petroleum hydrocarbon
ph Ph measurement of the sample, or liquid portion of sample, or aqueous phase o...
ph_meth Reference or method used in determining ph
ph_regm Information about treatment involving exposure of plants to varying levels of...
phaeopigments Concentration of phaeopigments; can include multiple phaeopigments
phase
phosphate Concentration of phosphate
phosplipid_fatt_acid Concentration of phospholipid fatty acids; can include multiple values
photon_flux Measurement of photon flux
plant_growth_med Specification of the media for growing the plants or tissue cultured samples,...
plant_product Substance produced by the plant, where the sample was obtained from
plant_sex Sex of the reproductive parts on the whole plant, e
plant_struc Name of plant structure the sample was obtained from; for Plant Ontology (PO)...
pollutants Pollutant types and, amount or concentrations measured at the time of samplin...
pool_dna_extracts Indicate whether multiple DNA extractions were mixed
porosity Porosity of deposited sediment is volume of voids divided by the total volume...
potassium Concentration of potassium in the sample
pour_point Temperature at which a liquid becomes semi solid and loses its flow character...
pre_treatment The process of pre-treatment removes materials that can be easily collected f...
pres_animal_insect The type and number of animals or insects present in the sampling space
pressure Pressure to which the sample is subject to, in atmospheres
prev_land_use_meth Reference or method used in determining previous land use and dates
previous_land_use Previous land use and dates
primary_prod Measurement of primary production, generally measured as isotope uptake
primary_treatment The process to produce both a generally homogeneous liquid capable of being t...
principal_investigator Principal Investigator who led the study and/or generated the dataset
processing_institution The organization that processed the sample
prod_rate Oil and/or gas production rates per well (e
prod_start_date Date of field's first production
profile_image_url A url that points to an image of a person
profile_position Cross-sectional position in the hillslope where sample was collected
project_id Proposal IDs or names associated with dataset
proport_woa_temperature
proposal_dna
proposal_rna
protein_spectral_count
protein_sum_masic_abundance
publications A list of publications that are associated with the entity
quad_pos The quadrant position of the sampling room within the building
radiation_regm Information about treatment involving exposure of plant or a plant part to a ...
rainfall_regm Information about treatment involving an exposure to a given amount of rainfa...
reaction_activity_set
reaction_aided_by
reaction_temperature
reaction_time
reactor_type Anaerobic digesters can be designed and engineered to operate using a number ...
read_based_taxonomy_analysis_activity_set This property links a database object to the set of read based analysis activ...
read_qc_analysis_activity_set This property links a database object to the set of read QC analysis activiti...
read_qc_analysis_statistic
redox_potential Redox potential, measured relative to a hydrogen cell, indicating oxidation o...
rel_air_humidity Partial vapor and air pressure, density of the vapor and air, or by the actua...
rel_humidity_out The recorded outside relative humidity value at the time of sampling
rel_samp_loc The sampling location within the train car
rel_to_oxygen Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic ...
related_identifiers Identifiers assigned to a thing that is similar to that which is represented ...
relevant_protocols
replicate_number If sending biological replicates, indicate the rep number here
reservoir Name of the reservoir (e
resins_pc Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...
right_participants
rna_absorb1 260/280 measurement of RNA sample purity
rna_absorb2 260/230 measurement of RNA sample purity
rna_collect_site Provide information on the site your RNA sample was collected from
rna_concentration
rna_cont_type Tube or plate (96-well)
rna_cont_well
rna_container_id
rna_isolate_meth Describe the method/protocol/kit used to extract DNA/RNA
rna_organisms List any organisms known or suspected to grow in co-culture, as well as estim...
rna_project_contact
rna_samp_id
rna_sample_format Solution in which the RNA sample has been suspended
rna_sample_name Give the RNA sample a name that is meaningful to you
rna_seq_project
rna_seq_project_name
rna_seq_project_pi
rna_volume
room_air_exch_rate The rate at which outside air replaces indoor air in a given space
room_architec_elem The unique details and component parts that, together, form the architecture ...
room_condt The condition of the room at the time of sampling
room_connected List of rooms connected to the sampling room by a doorway
room_count The total count of rooms in the built structure including all room types
room_dim The length, width and height of sampling room
room_door_dist Distance between doors (meters) in the hallway between the sampling room and ...
room_door_share List of room(s) (room number, room name) sharing a door with the sampling roo...
room_hallway List of room(s) (room number, room name) located in the same hallway as sampl...
room_loc The position of the room within the building
room_moist_dam_hist The history of moisture damage or mold in the past 12 months
room_net_area The net floor area of sampling room
room_occup Count of room occupancy at time of sampling
room_samp_pos The horizontal sampling position in the room relative to architectural elemen...
room_type The main purpose or activity of the sampling room
room_vol Volume of sampling room
room_wall_share List of room(s) (room number, room name) sharing a wall with the sampling roo...
room_window_count Number of windows in the room
root_cond Relevant rooting conditions such as field plot size, sowing density, containe...
root_med_carbon Source of organic carbon in the culture rooting medium; e
root_med_macronutr Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S);...
root_med_micronutr Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, ...
root_med_ph pH measurement of the culture rooting medium; e
root_med_regl Growth regulators in the culture rooting medium such as cytokinins, auxins, g...
root_med_solid Specification of the solidifying agent in the culture rooting medium; e
root_med_suppl Organic supplements of the culture rooting medium, such as vitamins, amino ac...
salinity The total concentration of all dissolved salts in a liquid or solid sample
salinity_category Categorcial description of the sample's salinity
salinity_meth Reference or method used in determining salinity
salt_regm Information about treatment involving use of salts as supplement to liquid an...
samp_capt_status Reason for the sample
samp_collec_device The device used to collect an environmental sample
samp_collec_method The method employed for collecting the sample
samp_collect_point Sampling point on the asset were sample was collected (e
samp_dis_stage Stage of the disease at the time of sample collection, e
samp_floor The floor of the building, where the sampling room is located
samp_loc_corr_rate Metal corrosion rate is the speed of metal deterioration due to environmental...
samp_mat_process A brief description of any processing applied to the sample during or after r...
samp_md In non deviated well, measured depth is equal to the true vertical depth, TVD...
samp_name A local identifier or name that for the material sample used for extracting n...
samp_preserv Preservative added to the sample (e
samp_room_id Sampling room number
samp_size The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll...
samp_sort_meth Method by which samples are sorted; open face filter collecting total suspend...
samp_store_dur Duration for which the sample was stored
samp_store_loc Location at which sample was stored, usually name of a specific freezer/room
samp_store_temp Temperature at which sample was stored, e
samp_subtype Name of sample sub-type
samp_taxon_id NCBI taxon id of the sample
samp_time_out The recent and long term history of outside sampling
samp_transport_cond Sample transport duration (in days or hrs) and temperature the sample was exp...
samp_tvdss Depth of the sample i
samp_type The type of material from which the sample was obtained
samp_vol_we_dna_ext Volume (ml) or mass (g) of total collected sample processed for DNA extractio...
samp_weather The weather on the sampling day
samp_well_name Name of the well (e
sample_collection_day
sample_collection_hour
sample_collection_minute
sample_collection_month
sample_collection_site
sample_collection_year
sample_link A unique identifier to assign parent-child, subsample, or sibling samples
sample_shipped The total amount or size (volume (ml), mass (g) or area (m2) ) of sample sent...
sample_type Type of sample being submitted
sampling_method
saturates_pc Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...
scaf_bp Total size in bp of all scaffolds
scaf_l50 Given a set of scaffolds, the L50 is defined as the sequence length of the sh...
scaf_l90 The L90 statistic is less than or equal to the L50 statistic; it is the lengt...
scaf_l_gt50k Total size in bp of all scaffolds greater than 50 KB
scaf_logsum The sum of the (length*log(length)) of all scaffolds, times some constant
scaf_max Maximum scaffold length
scaf_n50 Given a set of scaffolds, each with its own length, the N50 count is defined ...
scaf_n90 Given a set of scaffolds, each with its own length, the N90 count is defined ...
scaf_n_gt50k Total sequence count of scaffolds greater than 50 KB
scaf_pct_gt50k Total sequence size percentage of scaffolds greater than 50 KB
scaf_powsum Powersum of all scaffolds is the same as logsum except that it uses the sum o...
scaffolds Total sequence count of all scaffolds
season The season when sampling occurred
season_environment Treatment involving an exposure to a particular season (e
season_precpt The average of all seasonal precipitation values known, or an estimated equiv...
season_temp Mean seasonal temperature
season_use The seasons the space is occupied
secondary_treatment The process for substantially degrading the biological content of the sewage
sediment_type Information about the sediment type based on major constituents
seq_meth Sequencing machine used
seq_quality_check Indicate if the sequence has been called by automatic systems (none) or under...
seqid
sequencing_field
sewage_type Type of wastewater treatment plant as municipial or industrial
shad_dev_water_mold Signs of the presence of mold or mildew on the shading device
shading_device_cond The physical condition of the shading device at the time of sampling
shading_device_loc The location of the shading device in relation to the built structure
shading_device_mat The material the shading device is composed of
shading_device_type The type of shading device
sieving Collection design of pooled samples and/or sieve size and amount of sample si...
silicate Concentration of silicate
size_frac Filtering pore size used in sample preparation
size_frac_low Refers to the mesh/pore size used to pre-filter/pre-sort the sample
size_frac_up Refers to the mesh/pore size used to retain the sample
slope_aspect The direction a slope faces
slope_gradient Commonly called 'slope'
sludge_retent_time The time activated sludge remains in reactor
smarts_string
smiles
sodium Sodium concentration in the sample
soil_annual_season_temp
soil_horizon Specific layer in the land area which measures parallel to the soil surface a...
soil_text_measure The relative proportion of different grain sizes of mineral particles in a so...
soil_texture_meth Reference or method used in determining soil texture
soil_type Description of the soil type or classification
soil_type_meth Reference or method used in determining soil series name or other lower-level...
solar_irradiance The amount of solar energy that arrives at a specific area of a surface durin...
soluble_inorg_mat Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hy...
soluble_iron_micromol
soluble_org_mat Concentration of substances such as urea, fruit sugars, soluble proteins, dru...
soluble_react_phosp Concentration of soluble reactive phosphorus
source_mat_id A unique identifier assigned to a material sample (as defined by http://rs
space_typ_state Customary or normal state of the space
specific The building specifications
specific_ecosystem Specific ecosystems represent specific features of the environment like aphot...
specific_humidity The mass of water vapour in a unit mass of moist air, usually expressed as gr...
sr_dep_env Source rock depositional environment (https://en
sr_geol_age Geological age of source rock (Additional info: https://en
sr_kerog_type Origin of kerogen
sr_lithology Lithology of source rock (https://en
standing_water_regm Treatment involving an exposure to standing water during a plant's life span,...
start
start_date_inc Date the incubation was started
start_time_inc Time the incubation was started
started_at_time
stoichiometry from reaction participant class
store_cond Explain how and for how long the soil sample was stored before DNA extraction...
strand
study_identifiers
study_image Links a study to one or more images
study_set This property links a database object to the set of studies within it
subject
substructure_type The substructure or under building is that largely hidden section of the buil...
subsurface_depth
sulfate Concentration of sulfate in the sample
sulfate_fw Original sulfate concentration in the hydrocarbon resource
sulfide Concentration of sulfide in the sample
surf_air_cont Contaminant identified on surface
surf_humidity Surfaces: water activity as a function of air and material moisture
surf_material Surface materials at the point of sampling
surf_moisture Water held on a surface
surf_moisture_ph ph measurement of surface
surf_temp Temperature of the surface at the time of sampling
suspend_part_matter Concentration of suspended particulate matter
suspend_solids Concentration of substances including a wide variety of material, such as sil...
tan Total Acid Number (TAN) is a measurement of acidity that is determined by th...
target_gene Targeted gene or locus name for marker gene studies
target_subfragment Name of subfragment of a gene or locus
technical_reps If sending technical replicates of the same sample, indicate the replicate co...
temp Temperature of the sample at the time of sampling
temp_out The recorded temperature value at sampling time outside
term pointer to an ontology class
tertiary_treatment The process providing a final treatment stage to raise the effluent quality b...
tidal_stage Stage of tide
tillage Note method(s) used for tilling
tiss_cult_growth_med Description of plant tissue culture growth media used
title A name given to the entity that differs from the name/label programmatically ...
toluene Concentration of toluene in the sample
too_short_contig_num
tot_carb Total carbon content
tot_depth_water_col Measurement of total depth of water column
tot_diss_nitro Total dissolved nitrogen concentration, reported as nitrogen, measured by: to...
tot_inorg_nitro Total inorganic nitrogen content
tot_iron Concentration of total iron in the sample
tot_nitro Total nitrogen concentration of water samples, calculated by: total nitrogen ...
tot_nitro_cont_meth Reference or method used in determining the total nitrogen
tot_nitro_content Total nitrogen content of the sample
tot_org_c_meth Reference or method used in determining total organic carbon
tot_org_carb Definition for soil: total organic carbon content of the soil, definition oth...
tot_part_carb Total particulate carbon content
tot_phosp Total phosphorus concentration in the sample, calculated by: total phosphorus...
tot_phosphate Total amount or concentration of phosphate
tot_sulfur Concentration of total sulfur in the sample
total_bases
train_line The subway line name
train_stat_loc The train station collection location
train_stop_loc The train stop collection location
turbidity Measure of the amount of cloudiness or haziness in water caused by individual...
tvdss_of_hcr_press True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig...
tvdss_of_hcr_temp True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig...
typ_occup_density Customary or normal density of occupants
type An optional string that specifies the type object
unbinned_contig_num
url
used
ventilation_rate Ventilation rate of the system in the sampled premises
ventilation_type Ventilation system used in the sampled premises
version
vfa Concentration of Volatile Fatty Acids in the sample
vfa_fw Original volatile fatty acid concentration in the hydrocarbon resource
vis_media The building visual media
viscosity A measure of oil's resistance to gradual deformation by shear stress or t...
volatile_org_comp Concentration of carbon-based chemicals that easily evaporate at room tempera...
wall_area The total area of the sampled room's walls
wall_const_type The building class of the wall defined by the composition of the building ele...
wall_finish_mat The material utilized to finish the outer most layer of the wall
wall_height The average height of the walls in the sampled room
wall_loc The relative location of the wall within the room
wall_surf_treatment The surface treatment of interior wall
wall_texture The feel, appearance, or consistency of a wall surface
wall_thermal_mass The ability of the wall to provide inertia against temperature fluctuations
wall_water_mold Signs of the presence of mold or mildew on a wall
was_associated_with
was_generated_by
was_informed_by
wastewater_type The origin of wastewater such as human waste, rainfall, storm drains, etc
water_cont_soil_meth Reference or method used in determining the water content of soil
water_content Water content measurement
water_current Measurement of magnitude and direction of flow within a fluid
water_cut Current amount of water (%) in a produced fluid stream; or the average of the...
water_feat_size The size of the water feature
water_feat_type The type of water feature present within the building being sampled
water_prod_rate Water production rates per well (e
water_temp_regm Information about treatment involving an exposure to water with varying degre...
watering_regm Information about treatment involving an exposure to watering frequencies, tr...
websites A list of websites that are associated with the entity
weekday The day of the week when sampling occurred
win A unique identifier of a well or wellbore
wind_direction Wind direction is the direction from which a wind originates
wind_speed Speed of wind measured at the time of sampling
window_cond The physical condition of the window at the time of sampling
window_cover The type of window covering
window_horiz_pos The horizontal position of the window on the wall
window_loc The relative location of the window within the room
window_mat The type of material used to finish a window
window_open_freq The number of times windows are opened per week
window_size The window's length and width
window_status Defines whether the windows were open or closed during environmental testing
window_type The type of windows
window_vert_pos The vertical position of the window on the wall
window_water_mold Signs of the presence of mold or mildew on the window
xylene Concentration of xylene in the sample
zinc Concentration of zinc in the sample

Enumerations

Enumeration Description
AnalysisTypeEnum
ArchStrucEnum
BiolStatEnum
BiosampleCategoryEnum Funding-based, sample location-based, or experimental method-based defined ca...
BioticRelationshipEnum
BuildDocsEnum
BuildOccupTypeEnum
BuildingSettingEnum
CeilCondEnum
CeilFinishMatEnum
CeilTextureEnum
CeilTypeEnum
ContainerTypeEnum
CreditEnum
CurLandUseEnum
DeposEnvEnum
DeviceTypeEnum
DnaContTypeEnum
DnaDnaseEnum
DnaSampleFormatEnum
DnaseRnaEnum
DoorCompTypeEnum
DoorCondEnum
DoorDirectEnum
DoorLocEnum
DoorMatEnum
DoorMoveEnum
DoorTypeEnum
DoorTypeMetalEnum
DoorTypeWoodEnum
DrainageClassEnum
DrawingsEnum
ExtWallOrientEnum
ExtWindowOrientEnum
FaoClassEnum
FileTypeEnum
FilterTypeEnum
FloorCondEnum
FloorFinishMatEnum
FloorStrucEnum
FloorWaterMoldEnum
FreqCleanEnum
FurnitureEnum
GenderRestroomEnum
GrowthHabitEnum
HandidnessEnum
HcProducedEnum
HcrEnum
HcrGeolAgeEnum
HeatCoolTypeEnum
HeatDelivLocEnum
HostSexEnum
IndoorSpaceEnum
IndoorSurfEnum
IntWallCondEnum
LightTypeEnum
LithologyEnum
MechStrucEnum
OccupDocumentEnum
OrganismCountEnum
OxyStatSampEnum
PlantGrowthMedEnum
PlantSexEnum
ProcessingInstitutionEnum
ProfilePositionEnum
QuadPosEnum
RelSampLocEnum
RelToOxygenEnum
RnaContTypeEnum
RnaSampleFormatEnum
RoomCondtEnum
RoomConnectedEnum
RoomLocEnum
RoomSampPosEnum
RoomTypeEnum
SampCaptStatusEnum
SampCollectPointEnum
SampDisStageEnum
SampFloorEnum
SampMdEnum
SampSubtypeEnum
SampWeatherEnum
SampleTypeEnum
SamplingMethodEnum
SeasonUseEnum
SedimentTypeEnum
ShadingDeviceCondEnum
ShadingDeviceTypeEnum
SoilHorizonEnum
SolventEnum
SpecificEnum
SrDepEnvEnum
SrGeolAgeEnum
SrKerogTypeEnum
SrLithologyEnum
SubstructureTypeEnum
SurfAirContEnum
SurfMaterialEnum
TidalStageEnum
TillageEnum
TrainLineEnum
TrainStatLocEnum
TrainStopLocEnum
VisMediaEnum
WallConstTypeEnum
WallFinishMatEnum
WallLocEnum
WallSurfTreatmentEnum
WallTextureEnum
WaterFeatTypeEnum
WeekdayEnum
WindowCondEnum
WindowCoverEnum
WindowHorizPosEnum
WindowLocEnum
WindowMatEnum
WindowTypeEnum
WindowVertPosEnum

Types

Type Description
xsd:boolean A binary (true or false) value
Bytes An integer value that corresponds to a size in bytes
xsd:string a compact URI
xsd:date a date (year, month and day) in an idealized calendar
linkml:DateOrDatetime Either a date or a datetime
xsd:dateTime The combination of a date and time
xsd:decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
DecimalDegree A decimal degree expresses latitude or longitude as decimal fractions
xsd:double A real number that conforms to the xsd:double specification
ExternalIdentifier A CURIE representing an external identifier
xsd:float A real number that conforms to the xsd:float specification
xsd:integer An integer
LanguageCode A language code conforming to ISO_639-1
xsd:string Prefix part of CURIE
shex:nonLiteral A URI, CURIE or BNODE that represents a node in a model
shex:iri A URI or CURIE that represents an object in the model
xsd:string A character string
xsd:dateTime A time object represents a (local) time of day, independent of any particular...
Unit
xsd:anyURI a complete URI
xsd:anyURI a URI or a CURIE

Subsets

Subset Description
Checklist A MIxS checklist
ChecklistPackageCombination A combination of a checklist and a package
DataObjectSubset Subset consisting of the data objects that either inputs or outputs of proces...
Environment
Investigation
MixsExtension
MixsEnvironmentalTriad
NucleicAcidSequenceSource
Package A MIxS package
SampleSubset Subset consisting of entities linked to the processing of samples
Sequencing
Soil
WorkflowSubset Subset consisting of just the workflow execution activities