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Class: ControlledTermValue

A controlled term or class from an ontology

URI: nmdc:ControlledTermValue

classDiagram class ControlledTermValue click ControlledTermValue href "../ControlledTermValue" AttributeValue <|-- ControlledTermValue click AttributeValue href "../AttributeValue" ControlledTermValue <|-- ControlledIdentifiedTermValue click ControlledIdentifiedTermValue href "../ControlledIdentifiedTermValue" ControlledTermValue : has_raw_value ControlledTermValue : term ControlledTermValue --> "0..1" OntologyClass : term click OntologyClass href "../OntologyClass" ControlledTermValue : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
term 0..1
OntologyClass		 pointer to an ontology class direct
has_raw_value 0..1
String		 The value that was specified for an annotation in raw form, i AttributeValue
type 1
Uriorcurie		 the class_uri of the class that has been instantiated AttributeValue

Usages

used by used in type used
Biosample chem_administration range ControlledTermValue
Biosample experimental_factor range ControlledTermValue
Biosample growth_facil range ControlledTermValue
Biosample host_body_product range ControlledTermValue
Biosample host_body_site range ControlledTermValue
Biosample host_phenotype range ControlledTermValue
Biosample plant_growth_med range ControlledTermValue
Biosample plant_struc range ControlledTermValue
Biosample samp_mat_process range ControlledTermValue

TODOs

  • add fields for ontology, branch

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc:ControlledTermValue
native nmdc:ControlledTermValue

LinkML Source

Direct

name: ControlledTermValue
description: A controlled term or class from an ontology
todos:
- add fields for ontology, branch
from_schema: https://w3id.org/nmdc/nmdc
is_a: AttributeValue
slots:
- term
class_uri: nmdc:ControlledTermValue

Induced

name: ControlledTermValue
description: A controlled term or class from an ontology
todos:
- add fields for ontology, branch
from_schema: https://w3id.org/nmdc/nmdc
is_a: AttributeValue
attributes:
  term:
    name: term
    description: pointer to an ontology class
    notes:
    - 'removed ''slot_uri: rdf:type'''
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: term
    owner: ControlledTermValue
    domain_of:
    - ControlledTermValue
    range: OntologyClass
    inlined: true
  has_raw_value:
    name: has_raw_value
    description: The value that was specified for an annotation in raw form, i.e.
      a string. E.g. "2 cm" or "2-4 cm"
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: has_raw_value
    owner: ControlledTermValue
    domain_of:
    - AttributeValue
    range: string
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    notes:
    - replaces legacy nmdc:type slot
    - makes it easier to read example data files
    - required for polymorphic MongoDB collections
    examples:
    - value: nmdc:Biosample
    - value: nmdc:Study
    from_schema: https://w3id.org/nmdc/nmdc
    see_also:
    - https://github.com/microbiomedata/nmdc-schema/issues/1048
    - https://github.com/microbiomedata/nmdc-schema/issues/1233
    - https://github.com/microbiomedata/nmdc-schema/issues/248
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: ControlledTermValue
    domain_of:
    - EukEval
    - FunctionalAnnotationAggMember
    - MobilePhaseSegment
    - PortionOfSubstance
    - MagBin
    - MetaboliteIdentification
    - PeptideQuantification
    - ProteinQuantification
    - GenomeFeature
    - FunctionalAnnotation
    - AttributeValue
    - NamedThing
    - FailureCategorization
    - Protocol
    - CreditAssociation
    - Doi
    range: uriorcurie
    required: true
class_uri: nmdc:ControlledTermValue