Class: FailureCategorization
URI: nmdc:FailureCategorization
classDiagram
class FailureCategorization
click FailureCategorization href "../FailureCategorization"
FailureCategorization : qc_failure_what
FailureCategorization --> "0..1" FailureWhatEnum : qc_failure_what
click FailureWhatEnum href "../FailureWhatEnum"
FailureCategorization : qc_failure_where
FailureCategorization --> "0..1" FailureWhereEnum : qc_failure_where
click FailureWhereEnum href "../FailureWhereEnum"
FailureCategorization : type
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| qc_failure_what | 0..1 FailureWhatEnum |
Provides a summary about what caused a lab or workflow process to fail | direct |
| qc_failure_where | 0..1 FailureWhereEnum |
Describes the nmdc schema class that corresonds to where the failure occurred | direct |
| type | 1 Uriorcurie |
the class_uri of the class that has been instantiated | direct |
Usages
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc:FailureCategorization |
| native | nmdc:FailureCategorization |
LinkML Source
Direct
name: FailureCategorization
from_schema: https://w3id.org/nmdc/nmdc
slots:
- qc_failure_what
- qc_failure_where
- type
class_uri: nmdc:FailureCategorization
Induced
name: FailureCategorization
from_schema: https://w3id.org/nmdc/nmdc
attributes:
qc_failure_what:
name: qc_failure_what
description: Provides a summary about what caused a lab or workflow process to
fail
comments:
- For example, low read count from a sequencer, malformed fastq files, etc.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_failure_what
owner: FailureCategorization
domain_of:
- FailureCategorization
range: FailureWhatEnum
qc_failure_where:
name: qc_failure_where
description: Describes the nmdc schema class that corresonds to where the failure
occurred. Most commonly this would be the same as Class that generated the results.
comments:
- If the assembly size was too small to proceed to annotation failure_where would
be MetagenomeAssembly.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_failure_where
owner: FailureCategorization
domain_of:
- FailureCategorization
range: FailureWhereEnum
type:
name: type
description: the class_uri of the class that has been instantiated
notes:
- replaces legacy nmdc:type slot
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
owner: FailureCategorization
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- PeptideQuantification
- ProteinQuantification
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- OntologyRelation
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true
class_uri: nmdc:FailureCategorization