Enum: FailureWhatEnum
The permitted values for describing where a failure occurred during processing in the lab during analysis workflows.
URI: FailureWhatEnum
Permissible Values
| Value | Meaning | Description |
|---|---|---|
| low_read_count | None | Number of output reads is not sufficient to continue to the next analysis ste... |
| malformed_data | None | Workflow failure reading input or writing the output file(s) |
| assembly_size_too_small | None | The size of the metagenome or metatranscriptome assembly is too small to proc... |
| no_valid_data_generated | None | A process ran but did not produce any output |
| other | None | A lab process or analysis workflow has failed in a way that has not been capt... |
| low_molecular_formula_assignment | None | Number of peaks with assigned molecular formulas during the workflow is not s... |
| low_metabolite_assignment | None | Number of metabolites identified during the Metabolomics or Lipidomics workfl... |
| low_c13_isotopologue_assignment | None | Number of 13C isotopologues identified during the Metabolomics or Lipidomics ... |
| low_peptide_to_spectrum_match_rate | None | Rate of peptide assignment during the analysis is not sufficient |
Slots
| Name | Description |
|---|---|
| qc_failure_what | Provides a summary about what caused a lab or workflow process to fail |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
LinkML Source
name: FailureWhatEnum
description: The permitted values for describing where a failure occurred during processing
in the lab during analysis workflows.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
permissible_values:
low_read_count:
text: low_read_count
description: Number of output reads is not sufficient to continue to the next
analysis step.
malformed_data:
text: malformed_data
description: Workflow failure reading input or writing the output file(s).
assembly_size_too_small:
text: assembly_size_too_small
description: The size of the metagenome or metatranscriptome assembly is too small
to proceed to the next analysis workflow.
no_valid_data_generated:
text: no_valid_data_generated
description: A process ran but did not produce any output. Ie binning ran but
did not produce any medium or high quality bins.
other:
text: other
description: A lab process or analysis workflow has failed in a way that has not
been captured by the available values yet. Please use slot 'qc_comment' to specify
details.
low_molecular_formula_assignment:
text: low_molecular_formula_assignment
description: Number of peaks with assigned molecular formulas during the workflow
is not sufficient.
low_metabolite_assignment:
text: low_metabolite_assignment
description: Number of metabolites identified during the Metabolomics or Lipidomics
workflow is not sufficient.
low_c13_isotopologue_assignment:
text: low_c13_isotopologue_assignment
description: Number of 13C isotopologues identified during the Metabolomics or
Lipidomics workflow is not sufficient.
low_peptide_to_spectrum_match_rate:
text: low_peptide_to_spectrum_match_rate
description: Rate of peptide assignment during the analysis is not sufficient.