Subset: JgiIsolate
Slots that map to a field on the JGI Isolate (NA) v19 submission form, identified by a structured_alias whose literal_form is the exact form field name. Membership is the alias: a slot is in this subset if and only if it carries a JGI Isolate v19 structured_alias. Most members are new NMDC slots for organism identity, strain verification, purity assessment, and biosafety classification; a few are reused MIxS slots (for example host_taxid, source_mat_id, estimated_size) whose JGI mapping is recorded via the alias rather than by a new slot.
URI: JgiIsolate
Comments
- The form template itself is access-restricted; each alias source points to the public JGI submission overview. To keep this subset exhaustive, add in_subset jgi_isolate wherever a JGI Isolate v19 structured_alias is added, at the same scope the alias lives (global slot or class slot_usage).
See Also
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Slots in subset
| Slot | Description |
|---|---|
| gc_content | Estimated GC content as a percentage |
| host_genus | Genus of the host organism that the sample was collected from |
| host_species | Species of the host organism that the sample was collected from |
| host_strain | Strain of the host organism that the sample was collected from |
| isolate_name | Isolate or mutant name |
| organism_genus | Genus of the organism |
| organism_species | Species of the organism |
| sample_collection_site | Free-text description of the place where the sample was collected: the geogra... |
| strain_name | Strain or cultivar name of the organism |