Index

A

add_metabolite_ids (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] add_row() (nmdc_ms_metadata_gen.sheet_generator.ChangeSheetGenerator static method) (nmdc_ms_metadata_gen.sheet_generator.WorkflowSheetGenerator static method)

analyte_category (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1]

B

BioOntologyInfoRetriever (class in nmdc_ms_metadata_gen.bio_ontology_api)

Biosample (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

C

calibration_id (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] CalibrationInformation (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] ChangeSheetGenerator (class in nmdc_ms_metadata_gen.sheet_generator) check_doj_urls() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method) check_for_biosamples() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method) check_manifest() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method) ChemicalConversionProcess (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] ChromatographicSeparationProcess (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] ChromatographyConfiguration (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] clean_dict() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method)

ControlledIdentifiedTermValue (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] create_controlled_identified_term_value() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method) create_geo_loc_value() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method) create_quantity_value() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method) create_text_value() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method) create_timestamp_value() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method) create_workflow_metadata() (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_metadata_generator.LCMSMetadataGenerator method) csv_process_data_description (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1]

D

DataObject (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] DINOMMetaDataGenerator (class in nmdc_ms_metadata_gen.di_nom_metadata_generator)

DissolvingProcess (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] dump_nmdc_database() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) dynam_parse_biosample_metadata() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method)

E

execution_resource (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1]

Extraction (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

F

FiltrationProcess (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

G

GCMSMetabolomicsMetadataGenerator (class in nmdc_ms_metadata_gen.gcms_metab_metadata_generator) GCMSMetabWorkflowMetadata (class in nmdc_ms_metadata_gen.data_classes) generate_biosample() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method) generate_calibration() (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator method) generate_calibration_id() (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator method) generate_chemical_conversion() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_chromatographic_separation() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_chromatography_configuration() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_data_object() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_dissolving_process() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_example_biosample_csv() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method) generate_extraction() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_filtration_process() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_instrument() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_manifest() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method) generate_mass_spec_fields() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method)

generate_mass_spectrometry() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method) generate_mass_spectrometry_configuration() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_metab_identifications() (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator method) generate_metabolomics_analysis() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_mobile_phase_segment() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_portion_of_substance() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_processed_sample() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_protocol() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) generate_subsampling_process() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) GeolocationValue (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] get_envo_terms() (nmdc_ms_metadata_gen.bio_ontology_api.BioOntologyInfoRetriever method) get_id() (nmdc_ms_metadata_gen.id_pool.IDPool method) get_start_end_times() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator static method) get_value() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method) get_workflow_version() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method)

H

hdf5_process_data_description (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1]

hdf5_process_data_obj_type (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1]

I

IDPool (class in nmdc_ms_metadata_gen.id_pool) initialize_empty_df() (nmdc_ms_metadata_gen.sheet_generator.ChangeSheetGenerator static method) (nmdc_ms_metadata_gen.sheet_generator.WorkflowSheetGenerator static method) Instrument (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] instrument_analysis_end_date (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1]

instrument_analysis_start_date (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] instrument_id (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] instrument_instance_specifier (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] is_type() (nmdc_ms_metadata_gen.metadata_parser.MetadataParser method)

J

json_generation() (nmdc_ms_metadata_gen.material_processing_generator.MaterialProcessingMetadataGenerator method)

json_submit() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method)

L

lc_config_id (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] LCMSLipidomicsMetadataGenerator (class in nmdc_ms_metadata_gen.lcms_lipid_metadata_generator) LCMSLipidWorkflowMetadata (class in nmdc_ms_metadata_gen.data_classes) LCMSMetabolomicsMetadataGenerator (class in nmdc_ms_metadata_gen.lcms_metab_metadata_generator)

LCMSMetadataGenerator (class in nmdc_ms_metadata_gen.lcms_metadata_generator) LCMSNOMMetadataGenerator (class in nmdc_ms_metadata_gen.lcms_nom_metadata_generator) load_bio_credentials() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) load_credentials() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) load_metadata() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method)

M

Manifest (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] manifest_id (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] map_final_samples() (nmdc_ms_metadata_gen.material_processing_generator.MaterialProcessingMetadataGenerator method) mass_spec_config_id (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute) mass_spec_configuration_id (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute) mass_spec_desc (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute) (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1]

mass_spec_eluent_intro (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] MassSpectrometry (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] MassSpectrometryConfiguration (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] MaterialProcessingMetadataGenerator (class in nmdc_ms_metadata_gen.material_processing_generator) MetaboliteIdentification (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] MetabolomicsAnalysis (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] MetadataParser (class in nmdc_ms_metadata_gen.metadata_parser) MobilePhaseSegment (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

N

nmdc_db_to_dict() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) nmdc_study (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] NMDCMetadataGenerator (class in nmdc_ms_metadata_gen.metadata_generator) NmdcTypes (class in nmdc_ms_metadata_gen.data_classes) NMDCWorkflowMetadataGenerator (class in nmdc_ms_metadata_gen.metadata_generator)

no_config_process_data_category (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] no_config_process_data_obj_type (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] NomAnalysis (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

O

OntologyClass (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

P

Pooling (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] PortionOfSubstance (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] processed_data_category (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] processed_data_dir (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] processed_data_file (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] processed_data_object_desc (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute) (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] processed_data_object_description (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1]

processed_data_object_type (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] ProcessedSample (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1] processing_institution (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] processing_institution_generation (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] processing_institution_workflow (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] Protocol (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

Q

qc_process_data_description (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute) (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1]

qc_process_data_obj_type (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute) (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] QuantityValue (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

R

raw_data_file (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1] raw_data_obj_desc (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] raw_data_obj_type (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] raw_data_object_type (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] raw_data_url (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1] (nmdc_ms_metadata_gen.data_classes.LCMSLipidWorkflowMetadata attribute), [1]

rerun() (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator method) (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_metadata_generator.LCMSMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator method) run() (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator method) (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_metadata_generator.LCMSMetadataGenerator method) (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator method) (nmdc_ms_metadata_gen.material_processing_generator.MaterialProcessingMetadataGenerator method)

S

sample_id (nmdc_ms_metadata_gen.data_classes.GCMSMetabWorkflowMetadata attribute), [1]

start_nmdc_database() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method) SubSamplingProcess (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

T

TextValue (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

TimeStampValue (nmdc_ms_metadata_gen.data_classes.NmdcTypes attribute), [1]

U

unique_columns (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1]

update_outputs() (nmdc_ms_metadata_gen.metadata_generator.NMDCWorkflowMetadataGenerator method)

V

validate_nmdc_database() (nmdc_ms_metadata_gen.metadata_generator.NMDCMetadataGenerator method)

W

wf_config_process_data_category (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] wf_config_process_data_description (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] wf_config_process_data_obj_type (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] workflow_analysis_name (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] workflow_category (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] workflow_description (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1]

workflow_git_url (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] workflow_param_data_category (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] workflow_param_data_object_desc (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute) (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] workflow_param_data_object_type (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] workflow_version (nmdc_ms_metadata_gen.di_nom_metadata_generator.DINOMMetaDataGenerator attribute), [1] (nmdc_ms_metadata_gen.gcms_metab_metadata_generator.GCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_lipid_metadata_generator.LCMSLipidomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_metab_metadata_generator.LCMSMetabolomicsMetadataGenerator attribute), [1] (nmdc_ms_metadata_gen.lcms_nom_metadata_generator.LCMSNOMMetadataGenerator attribute), [1] WorkflowSheetGenerator (class in nmdc_ms_metadata_gen.sheet_generator)