NMDC Mass Spectrometry Metadata Generation Documentation

Welcome to NMDC Mass Spectrometry Metadata Generation documentation. This package provides tools for mass spectrometry metadata generation for GC/MS metabolomics, LC-MS lipidomics, and NOM data.

Contents:

• Bio Ontology API Class
  • BioOntologyInfoRetriever
• Metadata Parser Base Class
  • MetadataParser
• Metadata Generator Base Class
  • NMDCMetadataGenerator
• Metadata Workflow Generator Base Class
  • NMDCWorkflowMetadataGenerator
• Material Processing Metadata Generator Base Class
  • MaterialProcessingMetadataGenerator
• LC/MS Metadata Generator Base Class
  • LCMSMetadataGenerator
• Data Class
  • NmdcTypes
  • GCMSMetabWorkflowMetadata
  • LCMSLipidWorkflowMetadata
• LC/MS Lipidomics Metadata Generator Subclass
  • LCMSLipidomicsMetadataGenerator
• LC/MS Metabolomics Metadata Generator Subclass
  • LCMSMetabolomicsMetadataGenerator
• GC/MS Metabolomics Metadata Generator Subclass
  • GCMSMetabolomicsMetadataGenerator
• Direct Infusion NOM Metadata Generator Subclass
  • DINOMMetaDataGenerator
• LC NOM Metadata Generator Subclass
  • LCMSNOMMetadataGenerator
• Validate YAML Outline Function
• Change Sheet Generator
  • ChangeSheetGenerator
• Workflow Sheet Generator
  • WorkflowSheetGenerator
• ID Pool
  • IDPool
• Main CLI Class
• Usage

Indices and tables

• Index

• Module Index

• Search Page