Enum: JgiIsolateMaterialKindEnum

Broad kind of organism or genetic element being sequenced. JGI uses this for internal biosafety routing under the field label "Biosafety Material Category".

URI: nmdc_sub_schema:JgiIsolateMaterialKindEnum

Permissible Values

Value	Meaning	Description
Alga	None	Photosynthetic eukaryote other than land plants
Animal	NCBITaxon:33208	Metazoan (multicellular animal)
Archaea	NCBITaxon:2157	Domain Archaea
Bacteria	NCBITaxon:2	Domain Bacteria
Fungi	NCBITaxon:4751	Kingdom Fungi
Plant	NCBITaxon:33090	Viridiplantae (green plants including land plants and green algae)
Plasmid	None	DNA isolated primarily from a plasmid rather than a cellular organism
Protist	None	Eukaryote that is not an animal, plant, or fungus
Virus	NCBITaxon:10239	Viruses (all Baltimore groups)
Synthetic Construct	NCBITaxon:32630	Artificially constructed sequence not derived from a natural organism

Slots

Name	Description
biosafety_mat_cat

Identifier and Mapping Information

Schema Source

• from schema: https://example.com/nmdc_submission_schema

LinkML Source

name: JgiIsolateMaterialKindEnum
description: Broad kind of organism or genetic element being sequenced. JGI uses this
  for internal biosafety routing under the field label "Biosafety Material Category".
from_schema: https://example.com/nmdc_submission_schema
rank: 1000
permissible_values:
  Alga:
    text: Alga
    description: Photosynthetic eukaryote other than land plants. Polyphyletic; no
      single NCBITaxon node covers all algae.
  Animal:
    text: Animal
    description: Metazoan (multicellular animal).
    meaning: NCBITaxon:33208
  Archaea:
    text: Archaea
    description: Domain Archaea.
    meaning: NCBITaxon:2157
  Bacteria:
    text: Bacteria
    description: Domain Bacteria.
    meaning: NCBITaxon:2
  Fungi:
    text: Fungi
    description: Kingdom Fungi.
    meaning: NCBITaxon:4751
  Plant:
    text: Plant
    description: Viridiplantae (green plants including land plants and green algae).
    meaning: NCBITaxon:33090
  Plasmid:
    text: Plasmid
    description: DNA isolated primarily from a plasmid rather than a cellular organism.
      Not a taxonomic group; no NCBITaxon meaning applicable.
  Protist:
    text: Protist
    description: Eukaryote that is not an animal, plant, or fungus. Polyphyletic;
      no single NCBITaxon node covers all protists.
  Virus:
    text: Virus
    description: Viruses (all Baltimore groups).
    meaning: NCBITaxon:10239
  Synthetic Construct:
    text: Synthetic Construct
    description: Artificially constructed sequence not derived from a natural organism.
    meaning: NCBITaxon:32630