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Slot: Sample Isolation Method (isolate_meth)

Method, protocol, or kit used to extract DNA or RNA from the sample.

URI: nmdc_sub_schema:isolate_meth Alias: isolate_meth

Applicable Classes

Name Description Modifies Slot
JgiIsolateTranscriptomeInterface JGI submission metadata for isolate TRANSCRIPTOME sequencing projects no
JgiIsolateCommonMixin Shared JGI isolate submission fields common to both the genome and the transc... yes
JgiIsolateGenomeInterface JGI submission metadata for isolate GENOME sequencing projects no

Properties

  • Range: String

  • Required: True

Examples

Value
Wizard Genomic DNA Purification Kit
CTAB chloroform extraction
TRIzol RNA extraction

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc_sub_schema:isolate_meth
native nmdc_sub_schema:isolate_meth

LinkML Source

name: isolate_meth
description: Method, protocol, or kit used to extract DNA or RNA from the sample.
title: Sample Isolation Method
examples:
- value: Wizard Genomic DNA Purification Kit
- value: CTAB chloroform extraction
- value: TRIzol RNA extraction
from_schema: https://example.com/nmdc_submission_schema
structured_aliases:
  Sample Isolation Method:
    literal_form: Sample Isolation Method
    predicate: EXACT_SYNONYM
    notes:
    - Exact JGI form template is access-restricted; source is the public submission
      overview.
    - JGI labels this field Sample Isolation Method, but its definition is the DNA
      or RNA extraction method.
    source: https://jgi.doe.gov/user-programs/pmo-overview/project-materials-submission-overview/
rank: 16
alias: isolate_meth
domain_of:
- JgiIsolateCommonMixin
range: string
required: true