Slot: nucleic acid absorbance 260/280 (nuc_acid_absorb1)
260/280 measurement of nucleic acid sample purity
URI: nmdc_sub_schema:nuc_acid_absorb1 Alias: nuc_acid_absorb1
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| JgiIsolateCommonMixin | Shared JGI isolate submission fields common to both the genome and the transc... | yes |
| JgiMtInterface | jgi_mt dh_interface | yes |
| JgiIsolateTranscriptomeInterface | JGI submission metadata for isolate TRANSCRIPTOME sequencing projects | no |
| JgiMgInterface | Metadata for samples sent to JGI for standard metagenome sequencing | yes |
| JgiMgLrInterface | Metadata for samples sent to JGI for long read metagenome sequencing | yes |
| JgiIsolateGenomeInterface | JGI submission metadata for isolate GENOME sequencing projects | no |
Properties
-
Range: Float
-
Recommended: True
-
Minimum Value: 0
Aliases
- dna_absorb1
- rna_absorb1
Examples
| Value |
|---|
| 2.02 |
Comments
- Recommended value is between 1 and 3.
- Required for plant/algal drafts, fungal standard/improved drafts, microbial improved draft, methylation, or any PacBio libraries.
Identifier and Mapping Information
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc_sub_schema:nuc_acid_absorb1 |
| native | nmdc_sub_schema:nuc_acid_absorb1 |
LinkML Source
name: nuc_acid_absorb1
description: 260/280 measurement of nucleic acid sample purity
title: nucleic acid absorbance 260/280
notes:
- JGI requires absorbance for plant/algal drafts, fungal standard/improved drafts,
microbial improved drafts, methylation, and any PacBio libraries. submission-schema
does not enforce that as a rule because the requirement keys on the JGI Sequencing
Product, which the schema does not carry as a slot. Tracked in https://github.com/microbiomedata/nmdc-server/issues/2177.
comments:
- Recommended value is between 1 and 3.
- Required for plant/algal drafts, fungal standard/improved drafts, microbial improved
draft, methylation, or any PacBio libraries.
examples:
- value: '2.02'
from_schema: https://example.com/nmdc_submission_schema
aliases:
- dna_absorb1
- rna_absorb1
rank: 7
alias: nuc_acid_absorb1
domain_of:
- JgiMgInterface
- JgiMgLrInterface
- JgiMtInterface
- JgiIsolateCommonMixin
range: float
recommended: true
minimum_value: 0.0001