Slot: Biological replicate/sample group Name (replicate_group)
Samples that are biological replicates should have the same group name. If your project does not contain biological replicates, give each sample its own group name.
URI: nmdc_sub_schema:replicate_group Alias: replicate_group
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| JgiIsolateCommonMixin | Shared JGI isolate submission fields common to both the genome and the transc... | yes |
| JgiMtInterface | jgi_mt dh_interface | yes |
| JgiIsolateTranscriptomeInterface | JGI submission metadata for isolate TRANSCRIPTOME sequencing projects | no |
| JgiMgInterface | Metadata for samples sent to JGI for standard metagenome sequencing | yes |
| JgiMgLrInterface | Metadata for samples sent to JGI for long read metagenome sequencing | yes |
| JgiIsolateGenomeInterface | JGI submission metadata for isolate GENOME sequencing projects | no |
Properties
-
Range: String
-
Recommended: True
Examples
| Value |
|---|
| SampleGroup1 |
Comments
- Required for RNA expression, IsoSeq, ChIP, Bisulphite-Seq, and methylation projects.
Identifier and Mapping Information
Schema Source
- from schema: https://example.com/nmdc_submission_schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc_sub_schema:replicate_group |
| native | nmdc_sub_schema:replicate_group |
LinkML Source
name: replicate_group
description: Samples that are biological replicates should have the same group name. If
your project does not contain biological replicates, give each sample its own group
name.
title: Biological replicate/sample group Name
notes:
- JGI requires this for RNA expression, IsoSeq, ChIP, Bisulphite-Seq, and methylation
products. submission-schema does not enforce that as a rule because the requirement
keys on the JGI Sequencing Product, which the schema does not carry as a slot. Tracked
in https://github.com/microbiomedata/nmdc-server/issues/2177.
comments:
- Required for RNA expression, IsoSeq, ChIP, Bisulphite-Seq, and methylation projects.
examples:
- value: SampleGroup1
from_schema: https://example.com/nmdc_submission_schema
rank: 5
alias: replicate_group
domain_of:
- JgiMgInterface
- JgiMgLrInterface
- JgiMtInterface
- JgiIsolateCommonMixin
range: string
recommended: true