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Slot: source material identifier (source_mat_id)

A globally unique identifier assigned to the parent sample or sample that is the source of this sample.

URI: MIXS:0000026 Alias: source_mat_id

Applicable Classes

Name Description Modifies Slot
JgiMgLrInterface Metadata for samples sent to JGI for long read metagenome sequencing no
EmslInterface emsl dh_interface no
WastewaterSludgeInterface wastewater_sludge dh_interface no
WaterInterface water dh_interface no
JgiIsolateTranscriptomeInterface JGI submission metadata for isolate TRANSCRIPTOME sequencing projects no
JgiMgInterface Metadata for samples sent to JGI for standard metagenome sequencing no
AirInterface air dh_interface no
HcrFluidsSwabsInterface hcr_fluids_swabs dh_interface no
JgiIsolateGenomeInterface JGI submission metadata for isolate GENOME sequencing projects no
HcrCoresInterface hcr_cores dh_interface no
HostAssociatedInterface host_associated dh_interface no
MiscEnvsInterface misc_envs dh_interface no
BiofilmInterface biofilm dh_interface no
PlantAssociatedInterface plant_associated dh_interface no
MetagenomeSequencingNonInterleavedDataInterface Interface for non-interleaved metagenome sequencing data no
BuiltEnvInterface built_env dh_interface no
MetatranscriptomeSequencingNonInterleavedDataInterface Interface for non-interleaved metatranscriptome sequencing data no
MetatranscriptomeSequencingInterleavedDataInterface Interface for interleaved metatranscriptome sequencing data no
SedimentInterface sediment dh_interface no
IsolateInterface Metadata for microbial isolate samples submitted to NMDC no
JgiMtInterface jgi_mt dh_interface no
DhMultiviewCommonColumnsMixin Mixin with DhMultiviewCommon Columns no
SoilInterface soil dh_interface no
MetagenomeSequencingInterleavedDataInterface Interface for interleaved metagenome sequencing data no

Properties

Examples

Value
igsn:AU1243
biosample:SAMEA2397676

Comments

  • Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn), NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These IDs enable linking to derived analytes and subsamples. If you have not assigned FAIR identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).
  • Prefixed FAIR identifiers are preferred where available: igsn for International Generic Sample Numbers (http://www.geosamples.org/getigsn), biosample for NCBI biosample accession IDs, gold for GOLD identifiers. The format is not constrained, so culture collection identifiers such as "DSM 6724" or "ATCC 5680" are also accepted.

TODOs

  • Currently, the comments say to use UUIDs. However, if we implement assigning NMDC identifiers with the minter we dont need to require a GUID. It can be an optional field to fill out only if they already have a resolvable ID.

Identifier and Mapping Information

Annotations

property value
Expected_value for cultures of microorganisms: identifiers for two culture collections; for other material a unique arbitrary identifer

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000026
native nmdc_sub_schema:source_mat_id

LinkML Source

name: source_mat_id
annotations:
  Expected_value:
    tag: Expected_value
    value: 'for cultures of microorganisms: identifiers for two culture collections;
      for other material a unique arbitrary identifer'
description: A globally unique identifier assigned to the parent sample or sample
  that is the source of this sample.
title: source material identifier
todos:
- Currently, the comments say to use UUIDs. However, if we implement assigning NMDC
  identifiers with the minter we dont need to require a GUID. It can be an optional
  field to fill out only if they already have a resolvable ID.
comments:
- Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn),
  NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These IDs
  enable linking to derived analytes and subsamples. If you have not assigned FAIR
  identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/).
- 'Prefixed FAIR identifiers are preferred where available: `igsn` for International
  Generic Sample Numbers (http://www.geosamples.org/getigsn), `biosample` for NCBI
  biosample accession IDs, `gold` for GOLD identifiers. The format is not constrained,
  so culture collection identifiers such as "DSM 6724" or "ATCC 5680" are also accepted.'
examples:
- value: igsn:AU1243
- value: biosample:SAMEA2397676
from_schema: https://example.com/nmdc_submission_schema
rank: 2
keywords:
- identifier
- material
- source
slot_uri: MIXS:0000026
alias: source_mat_id
domain_of:
- DhMultiviewCommonColumnsMixin
- IsolateInterface
slot_group: sample_id_section
range: string
multivalued: false