Class: BiosampleSetOrganismCount

A simple quantity, e.g. 2cm Flattened tabular form of 'QuantityValue'. Attributes are the union of base-class slots and slots from concrete subclasses of 'QuantityValue' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetOrganismCount

 classDiagram
    class BiosampleSetOrganismCount
    click BiosampleSetOrganismCount href "../BiosampleSetOrganismCount/"
      BiosampleSetOrganismCount : has_maximum_numeric_value

      BiosampleSetOrganismCount : has_minimum_numeric_value

      BiosampleSetOrganismCount : has_numeric_value

      BiosampleSetOrganismCount : has_raw_value

      BiosampleSetOrganismCount : has_unit





        BiosampleSetOrganismCount --> "1" UnitEnum : has_unit
        click UnitEnum href "../UnitEnum/"



      BiosampleSetOrganismCount : parent_id

      BiosampleSetOrganismCount : type

Slots

Name	Cardinality and Range	Description	Inheritance
has_maximum_numeric_value	0..1 Decimal	The maximum value part, expressed as number, of the quantity value when the v...	direct
has_minimum_numeric_value	0..1 Decimal	The minimum value part, expressed as number, of the quantity value when the v...	direct
has_numeric_value	0..1 Decimal	The number part of the quantity	direct
has_raw_value	0..1 String	Unnormalized atomic string representation, should in syntax {number} {unit}	direct
has_unit	1 UnitEnum	The unit of the quantity	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	direct
parent_id	0..1 String	Identifier of the parent 'Biosample' record	direct

Identifier and Mapping Information

Annotations

property	value
table_name	biosample_set_organism_count
source_class	Biosample

Schema Source

from schema: https://w3id.org/nmdc/nmdc-schema-flattened

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetOrganismCount
native	https://w3id.org/nmdc/nmdc-schema-flattened/BiosampleSetOrganismCount

LinkML Source

Direct

name: biosample_set_organism_count
annotations:
  table_name:
    tag: table_name
    value: biosample_set_organism_count
  source_class:
    tag: source_class
    value: Biosample
description: A simple quantity, e.g. 2cm Flattened tabular form of 'QuantityValue'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'QuantityValue' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  has_maximum_numeric_value:
    name: has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_minimum_numeric_value:
    name: has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_numeric_value:
    name: has_numeric_value
    description: The number part of the quantity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_raw_value:
    name: has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit}
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - study_set_study_image
    range: string
    multivalued: false
  has_unit:
    name: has_unit
    description: The unit of the quantity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: UnitEnum
    required: true
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Biosample' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string

Induced

name: biosample_set_organism_count
annotations:
  table_name:
    tag: table_name
    value: biosample_set_organism_count
  source_class:
    tag: source_class
    value: Biosample
description: A simple quantity, e.g. 2cm Flattened tabular form of 'QuantityValue'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'QuantityValue' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  has_maximum_numeric_value:
    name: has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_organism_count
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_minimum_numeric_value:
    name: has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_organism_count
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_numeric_value:
    name: has_numeric_value
    description: The number part of the quantity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_organism_count
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: decimal
    multivalued: false
  has_raw_value:
    name: has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit}
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_organism_count
    domain_of:
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - study_set_study_image
    range: string
    multivalued: false
  has_unit:
    name: has_unit
    description: The unit of the quantity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_organism_count
    domain_of:
    - biosample_set_misc_param
    - biosample_set_organism_count
    range: UnitEnum
    required: true
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_organism_count
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Biosample' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: biosample_set_organism_count
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string