Class: ConfigurationFlat

A set of parameters that define the actions of a process and is shared among multiple instances of the process. Flattened tabular form of 'Configuration'. Attributes are the union of base-class slots and slots from concrete subclasses of 'Configuration' that may appear via the 'type' field.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/ConfigurationFlat

 classDiagram
    class ConfigurationFlat
    click ConfigurationFlat href "../ConfigurationFlat/"
      ConfigurationFlat : alternative_identifiers

      ConfigurationFlat : chromatographic_category





        ConfigurationFlat --> "0..1" ChromatographicCategoryEnum : chromatographic_category
        click ChromatographicCategoryEnum href "../ChromatographicCategoryEnum/"



      ConfigurationFlat : description

      ConfigurationFlat : id

      ConfigurationFlat : ionization_source





        ConfigurationFlat --> "0..1" IonizationSourceEnum : ionization_source
        click IonizationSourceEnum href "../IonizationSourceEnum/"



      ConfigurationFlat : mass_analyzers





        ConfigurationFlat --> "*" MassAnalyzerEnum : mass_analyzers
        click MassAnalyzerEnum href "../MassAnalyzerEnum/"



      ConfigurationFlat : mass_spectrometry_acquisition_strategy





        ConfigurationFlat --> "0..1" MassSpectrometryAcquisitionStrategyEnum : mass_spectrometry_acquisition_strategy
        click MassSpectrometryAcquisitionStrategyEnum href "../MassSpectrometryAcquisitionStrategyEnum/"



      ConfigurationFlat : mass_spectrum_collection_modes





        ConfigurationFlat --> "*" MassSpectrumCollectionModeEnum : mass_spectrum_collection_modes
        click MassSpectrumCollectionModeEnum href "../MassSpectrumCollectionModeEnum/"



      ConfigurationFlat : name

      ConfigurationFlat : polarity_mode





        ConfigurationFlat --> "0..1" PolarityModeEnum : polarity_mode
        click PolarityModeEnum href "../PolarityModeEnum/"



      ConfigurationFlat : protocol_link_analysis_type





        ConfigurationFlat --> "*" AnalysisTypeEnum : protocol_link_analysis_type
        click AnalysisTypeEnum href "../AnalysisTypeEnum/"



      ConfigurationFlat : protocol_link_description

      ConfigurationFlat : protocol_link_name

      ConfigurationFlat : protocol_link_protocol_for





        ConfigurationFlat --> "0..1" ProtocolForEnum : protocol_link_protocol_for
        click ProtocolForEnum href "../ProtocolForEnum/"



      ConfigurationFlat : protocol_link_url

      ConfigurationFlat : resolution_categories





        ConfigurationFlat --> "*" ResolutionCategoryEnum : resolution_categories
        click ResolutionCategoryEnum href "../ResolutionCategoryEnum/"



      ConfigurationFlat : stationary_phase





        ConfigurationFlat --> "0..1" StationaryPhaseEnum : stationary_phase
        click StationaryPhaseEnum href "../StationaryPhaseEnum/"



      ConfigurationFlat : temperature_has_maximum_numeric_value

      ConfigurationFlat : temperature_has_minimum_numeric_value

      ConfigurationFlat : temperature_has_numeric_value

      ConfigurationFlat : temperature_has_raw_value

      ConfigurationFlat : temperature_has_unit





        ConfigurationFlat --> "0..1" UnitEnum : temperature_has_unit
        click UnitEnum href "../UnitEnum/"



      ConfigurationFlat : type

Slots

Name	Cardinality and Range	Description	Inheritance
alternative_identifiers	* Uriorcurie	A list of alternative identifiers for the entity	direct
chromatographic_category	0..1 ChromatographicCategoryEnum	The type of chromatography used in a process	direct
description	0..1 String	a human-readable description of a thing	direct
id	1 Uriorcurie	A unique identifier for a thing	direct
ionization_source	0..1 IonizationSourceEnum	The ionization source used to introduce processed samples into a mass spectro...	direct
mass_analyzers	* MassAnalyzerEnum	The kind of mass analyzer(s) used during the spectra collection	direct
mass_spectrometry_acquisition_strategy	0..1 MassSpectrometryAcquisitionStrategyEnum	Mode of running a mass spectrometer method by which m/z ranges are selected a...	direct
mass_spectrum_collection_modes	* MassSpectrumCollectionModeEnum	Indicates whether mass spectra were collected in full profile, reduced profil...	direct
name	0..1 String	A human readable label for an entity	direct
polarity_mode	0..1 PolarityModeEnum	the polarity of which ions are generated and detected	direct
protocol_link_analysis_type	* AnalysisTypeEnum	Select all the data types associated or available for this biosample Flattene...	direct
protocol_link_description	0..1 String	a human-readable description of a thing Flattened from nested slot 'protocol_...	direct
protocol_link_name	0..1 String	A human readable label for an entity Flattened from nested slot 'protocol_lin...	direct
protocol_link_protocol_for	0..1 ProtocolForEnum	The type of planned process that the protocol describes	direct
protocol_link_url	0..1 String	Flattened from nested slot 'protocol_link	direct
resolution_categories	* ResolutionCategoryEnum	The relative resolution at which spectra were collected	direct
stationary_phase	0..1 StationaryPhaseEnum	The material the stationary phase is comprised of used in chromatography	direct
temperature_has_maximum_numeric_value	0..1 Decimal	The maximum value part, expressed as number, of the quantity value when the v...	direct
temperature_has_minimum_numeric_value	0..1 Decimal	The minimum value part, expressed as number, of the quantity value when the v...	direct
temperature_has_numeric_value	0..1 Decimal	The number part of the quantity Flattened from nested slot 'temperature	direct
temperature_has_raw_value	0..1 String	Unnormalized atomic string representation, should in syntax {number} {unit} F...	direct
temperature_has_unit	0..1 UnitEnum	The unit of the quantity Flattened from nested slot 'temperature	direct
type	1 Uriorcurie	the class_uri of the class that has been instantiated	direct

Identifier and Mapping Information

Annotations

property	value
table_name	configuration_set
source_class	Configuration

Schema Source

from schema: https://w3id.org/nmdc/nmdc-schema-flattened

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/nmdc/nmdc-schema-flattened/ConfigurationFlat
native	https://w3id.org/nmdc/nmdc-schema-flattened/ConfigurationFlat

LinkML Source

Direct

name: ConfigurationFlat
annotations:
  table_name:
    tag: table_name
    value: configuration_set
  source_class:
    tag: source_class
    value: Configuration
description: A set of parameters that define the actions of a process and is shared
  among multiple instances of the process. Flattened tabular form of 'Configuration'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'Configuration' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  chromatographic_category:
    name: chromatographic_category
    description: The type of chromatography used in a process.. Polymorphic subclass-specific
      slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    range: ChromatographicCategoryEnum
    required: false
    multivalued: false
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  ionization_source:
    name: ionization_source
    description: The ionization source used to introduce processed samples into a
      mass spectrometer. Polymorphic subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    range: IonizationSourceEnum
    required: false
    multivalued: false
  mass_analyzers:
    name: mass_analyzers
    description: The kind of mass analyzer(s) used during the spectra collection..
      Polymorphic subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    range: MassAnalyzerEnum
    required: false
    multivalued: true
  mass_spectrometry_acquisition_strategy:
    name: mass_spectrometry_acquisition_strategy
    description: Mode of running a mass spectrometer method by which m/z ranges are
      selected and ions possibly fragment.. Polymorphic subclass-specific slot (from
      'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    range: MassSpectrometryAcquisitionStrategyEnum
    required: false
    multivalued: false
  mass_spectrum_collection_modes:
    name: mass_spectrum_collection_modes
    description: Indicates whether mass spectra were collected in full profile, reduced
      profile, or centroid mode during acquisition.. Polymorphic subclass-specific
      slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    range: MassSpectrumCollectionModeEnum
    required: false
    multivalued: true
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  polarity_mode:
    name: polarity_mode
    description: the polarity of which ions are generated and detected. Polymorphic
      subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    range: PolarityModeEnum
    required: false
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  resolution_categories:
    name: resolution_categories
    description: The relative resolution at which spectra were collected.. Polymorphic
      subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    range: ResolutionCategoryEnum
    required: false
    multivalued: true
  stationary_phase:
    name: stationary_phase
    description: The material the stationary phase is comprised of used in chromatography..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    range: StationaryPhaseEnum
    required: false
    multivalued: false
  temperature_has_maximum_numeric_value:
    name: temperature_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_maximum_numeric_value'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_minimum_numeric_value:
    name: temperature_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_minimum_numeric_value'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_numeric_value:
    name: temperature_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'temperature.has_numeric_value'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_raw_value:
    name: temperature_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'temperature.has_raw_value'.. Polymorphic
      subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: string
    required: false
    multivalued: false
  temperature_has_unit:
    name: temperature_has_unit
    description: The unit of the quantity Flattened from nested slot 'temperature.has_unit'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: UnitEnum
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false

Induced

name: ConfigurationFlat
annotations:
  table_name:
    tag: table_name
    value: configuration_set
  source_class:
    tag: source_class
    value: Configuration
description: A set of parameters that define the actions of a process and is shared
  among multiple instances of the process. Flattened tabular form of 'Configuration'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'Configuration' that may appear via the 'type' field.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    - workflow_execution_set_has_metabolite_identifications
    range: uriorcurie
    multivalued: true
  chromatographic_category:
    name: chromatographic_category
    description: The type of chromatography used in a process.. Polymorphic subclass-specific
      slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    range: ChromatographicCategoryEnum
    required: false
    multivalued: false
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    identifier: true
    owner: ConfigurationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - WorkflowExecutionFlat
    range: uriorcurie
    required: true
    multivalued: false
  ionization_source:
    name: ionization_source
    description: The ionization source used to introduce processed samples into a
      mass spectrometer. Polymorphic subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    range: IonizationSourceEnum
    required: false
    multivalued: false
  mass_analyzers:
    name: mass_analyzers
    description: The kind of mass analyzer(s) used during the spectra collection..
      Polymorphic subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    range: MassAnalyzerEnum
    required: false
    multivalued: true
  mass_spectrometry_acquisition_strategy:
    name: mass_spectrometry_acquisition_strategy
    description: Mode of running a mass spectrometer method by which m/z ranges are
      selected and ions possibly fragment.. Polymorphic subclass-specific slot (from
      'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    range: MassSpectrometryAcquisitionStrategyEnum
    required: false
    multivalued: false
  mass_spectrum_collection_modes:
    name: mass_spectrum_collection_modes
    description: Indicates whether mass spectra were collected in full profile, reduced
      profile, or centroid mode during acquisition.. Polymorphic subclass-specific
      slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    range: MassSpectrumCollectionModeEnum
    required: false
    multivalued: true
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - BiosampleFlat
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - DataObjectFlat
    - FieldResearchSiteFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - StudyFlat
    - study_set_protocol_link
    - WorkflowExecutionFlat
    range: string
    multivalued: false
  polarity_mode:
    name: polarity_mode
    description: the polarity of which ions are generated and detected. Polymorphic
      subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    range: PolarityModeEnum
    required: false
    multivalued: false
  protocol_link_analysis_type:
    name: protocol_link_analysis_type
    description: Select all the data types associated or available for this biosample
      Flattened from nested slot 'protocol_link.analysis_type'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: AnalysisTypeEnum
    required: false
    multivalued: true
  protocol_link_description:
    name: protocol_link_description
    description: a human-readable description of a thing Flattened from nested slot
      'protocol_link.description'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_name:
    name: protocol_link_name
    description: A human readable label for an entity Flattened from nested slot 'protocol_link.name'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  protocol_link_protocol_for:
    name: protocol_link_protocol_for
    description: The type of planned process that the protocol describes. Flattened
      from nested slot 'protocol_link.protocol_for'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: ProtocolForEnum
    required: false
    multivalued: false
  protocol_link_url:
    name: protocol_link_url
    description: Flattened from nested slot 'protocol_link.url'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - CollectingBiosamplesFromSiteFlat
    - ConfigurationFlat
    - DataGenerationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    - WorkflowExecutionFlat
    range: string
    required: false
    multivalued: false
  resolution_categories:
    name: resolution_categories
    description: The relative resolution at which spectra were collected.. Polymorphic
      subclass-specific slot (from 'MassSpectrometryConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    range: ResolutionCategoryEnum
    required: false
    multivalued: true
  stationary_phase:
    name: stationary_phase
    description: The material the stationary phase is comprised of used in chromatography..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    range: StationaryPhaseEnum
    required: false
    multivalued: false
  temperature_has_maximum_numeric_value:
    name: temperature_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_maximum_numeric_value'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_minimum_numeric_value:
    name: temperature_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'temperature.has_minimum_numeric_value'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_numeric_value:
    name: temperature_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'temperature.has_numeric_value'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: decimal
    required: false
    multivalued: false
  temperature_has_raw_value:
    name: temperature_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'temperature.has_raw_value'.. Polymorphic
      subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: string
    required: false
    multivalued: false
  temperature_has_unit:
    name: temperature_has_unit
    description: The unit of the quantity Flattened from nested slot 'temperature.has_unit'..
      Polymorphic subclass-specific slot (from 'ChromatographyConfiguration').
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: ConfigurationFlat
    domain_of:
    - ConfigurationFlat
    - MaterialProcessingFlat
    - StorageProcessFlat
    range: UnitEnum
    required: false
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: ConfigurationFlat
    domain_of:
    - BiosampleFlat
    - biosample_set_agrochem_addition
    - biosample_set_air_temp_regm
    - biosample_set_antibiotic_regm
    - biosample_set_atmospheric_data
    - biosample_set_biomass
    - biosample_set_chem_administration
    - biosample_set_chem_mutagen
    - biosample_set_climate_environment
    - biosample_set_diether_lipids
    - biosample_set_emulsions
    - biosample_set_fertilizer_regm
    - biosample_set_fungicide_regm
    - biosample_set_gaseous_environment
    - biosample_set_gaseous_substances
    - biosample_set_gravity
    - biosample_set_growth_hormone_regm
    - biosample_set_heavy_metals
    - biosample_set_herbicide_regm
    - biosample_set_host_diet
    - biosample_set_humidity_regm
    - biosample_set_inorg_particles
    - biosample_set_mineral_nutr_regm
    - biosample_set_misc_param
    - biosample_set_n_alkanes
    - biosample_set_org_particles
    - biosample_set_organism_count
    - biosample_set_particle_class
    - biosample_set_perturbation
    - biosample_set_pesticide_regm
    - biosample_set_ph_regm
    - biosample_set_phaeopigments
    - biosample_set_phosplipid_fatt_acid
    - biosample_set_pollutants
    - biosample_set_radiation_regm
    - biosample_set_rainfall_regm
    - biosample_set_salt_regm
    - biosample_set_season_environment
    - biosample_set_soluble_inorg_mat
    - biosample_set_soluble_org_mat
    - biosample_set_standing_water_regm
    - biosample_set_suspend_solids
    - biosample_set_volatile_org_comp
    - biosample_set_water_temp_regm
    - biosample_set_watering_regm
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - DataGenerationFlat
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false