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Class: ConfigurationSetOrderedMobilePhasesSubstancesUsed

A portion of any matter of defined composition that has discrete existence, whose origin may be biological, mineral or chemical. Flattened tabular form of 'PortionOfSubstance'. Attributes are the union of base-class slots and slots from concrete subclasses of 'PortionOfSubstance' that may appear via the 'type' field. Join to its mobile phase using parent_id and mobile_phase_index; substance_index preserves the source list order and duplicates.

URI: https://w3id.org/nmdc/nmdc-schema-flattened/ConfigurationSetOrderedMobilePhasesSubstancesUsed

 classDiagram
    class ConfigurationSetOrderedMobilePhasesSubstancesUsed
    click ConfigurationSetOrderedMobilePhasesSubstancesUsed href "../ConfigurationSetOrderedMobilePhasesSubstancesUsed/"
      ConfigurationSetOrderedMobilePhasesSubstancesUsed : final_concentration_has_maximum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : final_concentration_has_minimum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : final_concentration_has_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : final_concentration_has_raw_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : final_concentration_has_unit





        ConfigurationSetOrderedMobilePhasesSubstancesUsed --> "0..1" UnitEnum : final_concentration_has_unit
        click UnitEnum href "../UnitEnum/"



      ConfigurationSetOrderedMobilePhasesSubstancesUsed : known_as





        ConfigurationSetOrderedMobilePhasesSubstancesUsed --> "0..1" ChemicalEntityEnum : known_as
        click ChemicalEntityEnum href "../ChemicalEntityEnum/"



      ConfigurationSetOrderedMobilePhasesSubstancesUsed : mass_has_maximum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : mass_has_minimum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : mass_has_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : mass_has_raw_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : mass_has_unit





        ConfigurationSetOrderedMobilePhasesSubstancesUsed --> "0..1" UnitEnum : mass_has_unit
        click UnitEnum href "../UnitEnum/"



      ConfigurationSetOrderedMobilePhasesSubstancesUsed : mobile_phase_index

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : parent_id

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : source_concentration_has_maximum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : source_concentration_has_minimum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : source_concentration_has_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : source_concentration_has_raw_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : source_concentration_has_unit





        ConfigurationSetOrderedMobilePhasesSubstancesUsed --> "0..1" UnitEnum : source_concentration_has_unit
        click UnitEnum href "../UnitEnum/"



      ConfigurationSetOrderedMobilePhasesSubstancesUsed : substance_index

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : substance_role





        ConfigurationSetOrderedMobilePhasesSubstancesUsed --> "0..1" SubstanceRoleEnum : substance_role
        click SubstanceRoleEnum href "../SubstanceRoleEnum/"



      ConfigurationSetOrderedMobilePhasesSubstancesUsed : type

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : volume_has_maximum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : volume_has_minimum_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : volume_has_numeric_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : volume_has_raw_value

      ConfigurationSetOrderedMobilePhasesSubstancesUsed : volume_has_unit





        ConfigurationSetOrderedMobilePhasesSubstancesUsed --> "0..1" UnitEnum : volume_has_unit
        click UnitEnum href "../UnitEnum/"

Slots

Name Cardinality and Range Description Inheritance
final_concentration_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
final_concentration_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
final_concentration_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'final_concentrati... direct
final_concentration_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
final_concentration_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'final_concentration direct
known_as 0..1
ChemicalEntityEnum		 The substance from which a portion was taken direct
mass_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
mass_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
mass_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'mass direct
mass_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
mass_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'mass direct
source_concentration_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
source_concentration_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
source_concentration_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'source_concentrat... direct
source_concentration_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
source_concentration_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'source_concentration direct
substance_role 0..1
SubstanceRoleEnum		 The role of a substance in a process direct
type 1
Uriorcurie		 the class_uri of the class that has been instantiated direct
volume_has_maximum_numeric_value 0..1
Decimal		 The maximum value part, expressed as number, of the quantity value when the v... direct
volume_has_minimum_numeric_value 0..1
Decimal		 The minimum value part, expressed as number, of the quantity value when the v... direct
volume_has_numeric_value 0..1
Decimal		 The number part of the quantity Flattened from nested slot 'volume direct
volume_has_raw_value 0..1
String		 Unnormalized atomic string representation, should in syntax {number} {unit} F... direct
volume_has_unit 0..1
UnitEnum		 The unit of the quantity Flattened from nested slot 'volume direct
parent_id 0..1
String		 Identifier of the parent 'Configuration' record direct
mobile_phase_index 1
Integer		 Zero-based source list position of this mobile phase within its root record direct
substance_index 1
Integer		 Zero-based source list position of this substance within its mobile phase direct

Identifier and Mapping Information

Annotations

property value
table_name configuration_set_ordered_mobile_phases_substances_used
source_class Configuration

Schema Source

Mappings

Mapping Type Mapped Value
self https://w3id.org/nmdc/nmdc-schema-flattened/ConfigurationSetOrderedMobilePhasesSubstancesUsed
native https://w3id.org/nmdc/nmdc-schema-flattened/ConfigurationSetOrderedMobilePhasesSubstancesUsed

LinkML Source

Direct

name: configuration_set_ordered_mobile_phases_substances_used
annotations:
  table_name:
    tag: table_name
    value: configuration_set_ordered_mobile_phases_substances_used
  source_class:
    tag: source_class
    value: Configuration
description: A portion of any matter of defined composition that has discrete existence,
  whose origin may be biological, mineral or chemical. Flattened tabular form of 'PortionOfSubstance'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'PortionOfSubstance' that may appear via the 'type' field. Join to its mobile
  phase using parent_id and mobile_phase_index; substance_index preserves the source
  list order and duplicates.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  final_concentration_has_maximum_numeric_value:
    name: final_concentration_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'final_concentration.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  final_concentration_has_minimum_numeric_value:
    name: final_concentration_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'final_concentration.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  final_concentration_has_numeric_value:
    name: final_concentration_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'final_concentration.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  final_concentration_has_raw_value:
    name: final_concentration_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'final_concentration.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  final_concentration_has_unit:
    name: final_concentration_has_unit
    description: The unit of the quantity Flattened from nested slot 'final_concentration.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  known_as:
    name: known_as
    description: The substance from which a portion was taken.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: ChemicalEntityEnum
    multivalued: false
  mass_has_maximum_numeric_value:
    name: mass_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'mass.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  mass_has_minimum_numeric_value:
    name: mass_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'mass.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  mass_has_numeric_value:
    name: mass_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'mass.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  mass_has_raw_value:
    name: mass_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'mass.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  mass_has_unit:
    name: mass_has_unit
    description: The unit of the quantity Flattened from nested slot 'mass.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  source_concentration_has_maximum_numeric_value:
    name: source_concentration_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'source_concentration.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  source_concentration_has_minimum_numeric_value:
    name: source_concentration_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'source_concentration.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  source_concentration_has_numeric_value:
    name: source_concentration_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'source_concentration.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  source_concentration_has_raw_value:
    name: source_concentration_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'source_concentration.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  source_concentration_has_unit:
    name: source_concentration_has_unit
    description: The unit of the quantity Flattened from nested slot 'source_concentration.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  substance_role:
    name: substance_role
    description: The role of a substance in a process
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: SubstanceRoleEnum
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  volume_has_maximum_numeric_value:
    name: volume_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_minimum_numeric_value:
    name: volume_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_numeric_value:
    name: volume_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'volume.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_raw_value:
    name: volume_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'volume.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  volume_has_unit:
    name: volume_has_unit
    description: The unit of the quantity Flattened from nested slot 'volume.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Configuration' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string
  mobile_phase_index:
    name: mobile_phase_index
    description: Zero-based source list position of this mobile phase within its root
      record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    range: integer
    required: true
    minimum_value: 0
  substance_index:
    name: substance_index
    description: Zero-based source list position of this substance within its mobile
      phase.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    range: integer
    required: true
    minimum_value: 0

Induced

name: configuration_set_ordered_mobile_phases_substances_used
annotations:
  table_name:
    tag: table_name
    value: configuration_set_ordered_mobile_phases_substances_used
  source_class:
    tag: source_class
    value: Configuration
description: A portion of any matter of defined composition that has discrete existence,
  whose origin may be biological, mineral or chemical. Flattened tabular form of 'PortionOfSubstance'.
  Attributes are the union of base-class slots and slots from concrete subclasses
  of 'PortionOfSubstance' that may appear via the 'type' field. Join to its mobile
  phase using parent_id and mobile_phase_index; substance_index preserves the source
  list order and duplicates.
from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
attributes:
  final_concentration_has_maximum_numeric_value:
    name: final_concentration_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'final_concentration.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  final_concentration_has_minimum_numeric_value:
    name: final_concentration_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'final_concentration.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  final_concentration_has_numeric_value:
    name: final_concentration_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'final_concentration.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  final_concentration_has_raw_value:
    name: final_concentration_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'final_concentration.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  final_concentration_has_unit:
    name: final_concentration_has_unit
    description: The unit of the quantity Flattened from nested slot 'final_concentration.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  known_as:
    name: known_as
    description: The substance from which a portion was taken.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: ChemicalEntityEnum
    multivalued: false
  mass_has_maximum_numeric_value:
    name: mass_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'mass.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  mass_has_minimum_numeric_value:
    name: mass_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'mass.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  mass_has_numeric_value:
    name: mass_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'mass.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  mass_has_raw_value:
    name: mass_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'mass.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  mass_has_unit:
    name: mass_has_unit
    description: The unit of the quantity Flattened from nested slot 'mass.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  source_concentration_has_maximum_numeric_value:
    name: source_concentration_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'source_concentration.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  source_concentration_has_minimum_numeric_value:
    name: source_concentration_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'source_concentration.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  source_concentration_has_numeric_value:
    name: source_concentration_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'source_concentration.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  source_concentration_has_raw_value:
    name: source_concentration_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'source_concentration.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  source_concentration_has_unit:
    name: source_concentration_has_unit
    description: The unit of the quantity Flattened from nested slot 'source_concentration.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  substance_role:
    name: substance_role
    description: The role of a substance in a process
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: SubstanceRoleEnum
    multivalued: false
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - BiosampleFlat
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - CalibrationInformationFlat
    - CollectingBiosamplesFromSiteFlat
    - collecting_biosamples_from_site_set_has_failure_categorization
    - ConfigurationFlat
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - DataGenerationFlat
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - DataObjectFlat
    - FieldResearchSiteFlat
    - FunctionalAnnotationAggMemberFlat
    - FunctionalAnnotationFlat
    - GenomeFeatureFlat
    - InstrumentFlat
    - ManifestFlat
    - MaterialProcessingFlat
    - material_processing_set_has_failure_categorization
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - OrganismSampleFlat
    - OrganismFlat
    - organism_set_classified_as
    - ProcessedSampleFlat
    - StorageProcessFlat
    - storage_process_set_has_failure_categorization
    - storage_process_set_substances_used
    - StudyFlat
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_protocol_link
    - study_set_study_image
    - WorkflowExecutionFlat
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_mags_list
    range: uriorcurie
    required: true
    multivalued: false
  volume_has_maximum_numeric_value:
    name: volume_has_maximum_numeric_value
    description: The maximum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_maximum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_minimum_numeric_value:
    name: volume_has_minimum_numeric_value
    description: The minimum value part, expressed as number, of the quantity value
      when the value covers a range. Flattened from nested slot 'volume.has_minimum_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_numeric_value:
    name: volume_has_numeric_value
    description: The number part of the quantity Flattened from nested slot 'volume.has_numeric_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: decimal
    required: false
    multivalued: false
  volume_has_raw_value:
    name: volume_has_raw_value
    description: Unnormalized atomic string representation, should in syntax {number}
      {unit} Flattened from nested slot 'volume.has_raw_value'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: string
    required: false
    multivalued: false
  volume_has_unit:
    name: volume_has_unit
    description: The unit of the quantity Flattened from nested slot 'volume.has_unit'.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - MaterialProcessingFlat
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - storage_process_set_substances_used
    range: UnitEnum
    required: false
    multivalued: false
  parent_id:
    name: parent_id
    description: Identifier of the parent 'Configuration' record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - biosample_set_associated_studies
    - biosample_set_chem_administration
    - biosample_set_misc_param
    - biosample_set_organism_count
    - collecting_biosamples_from_site_set_has_failure_categorization
    - collecting_biosamples_from_site_set_has_input
    - collecting_biosamples_from_site_set_has_output
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - data_generation_set_associated_studies
    - data_generation_set_has_credit_associations
    - data_generation_set_has_failure_categorization
    - data_generation_set_has_input
    - data_generation_set_has_output
    - data_generation_set_instrument_used
    - data_object_set_in_manifest
    - field_research_site_set_part_of
    - material_processing_set_has_failure_categorization
    - material_processing_set_has_input
    - material_processing_set_has_output
    - material_processing_set_instrument_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    - material_processing_set_substances_used
    - organism_sample_set_associated_studies
    - organism_set_classified_as
    - storage_process_set_has_failure_categorization
    - storage_process_set_has_input
    - storage_process_set_has_output
    - storage_process_set_substances_used
    - study_set_associated_dois
    - study_set_has_credit_associations
    - study_set_part_of
    - study_set_protocol_link
    - study_set_study_image
    - workflow_execution_set_has_failure_categorization
    - workflow_execution_set_has_input
    - workflow_execution_set_has_metabolite_identifications
    - workflow_execution_set_has_output
    - workflow_execution_set_mags_list
    - workflow_execution_set_uses_calibration
    - workflow_execution_set_was_informed_by
    range: string
  mobile_phase_index:
    name: mobile_phase_index
    description: Zero-based source list position of this mobile phase within its root
      record.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases
    - material_processing_set_ordered_mobile_phases_substances_used
    range: integer
    required: true
    minimum_value: 0
  substance_index:
    name: substance_index
    description: Zero-based source list position of this substance within its mobile
      phase.
    from_schema: https://w3id.org/nmdc/nmdc-schema-flattened
    rank: 1000
    owner: configuration_set_ordered_mobile_phases_substances_used
    domain_of:
    - configuration_set_ordered_mobile_phases_substances_used
    - material_processing_set_ordered_mobile_phases_substances_used
    range: integer
    required: true
    minimum_value: 0